Merge branch 'flask' of https://github.com/OriginalPenguin/genenetwork into flask

14 files changed, 274 insertions, 76 deletions

diff --git a/wqflask/cfg/__init__.py b/wqflask/cfg/__init__.py
new file mode 100644
index 00000000..e69de29b
--- /dev/null
+++ b/wqflask/cfg/__init__.py
diff --git a/wqflask/cfg/default_settings.py b/wqflask/cfg/default_settings.py
new file mode 100644
index 00000000..30ad51d1
--- /dev/null
+++ b/wqflask/cfg/default_settings.py
@@ -0,0 +1 @@
+LOGFILE = """/tmp/flask_gn_log"""
diff --git a/wqflask/wqflask/__init__.py b/wqflask/wqflask/__init__.py
index a6119dcc..a7492e77 100644
--- a/wqflask/wqflask/__init__.py
+++ b/wqflask/wqflask/__init__.py
@@ -9,6 +9,10 @@ from utility import formatting
 
 app = Flask(__name__)
 
+# See http://flask.pocoo.org/docs/config/#configuring-from-files
+app.config.from_object('cfg.default_settings')
+app.config.from_envvar('WQFLASK_SETTINGS')
+
 app.jinja_env.globals.update(
     numify = formatting.numify
 )
diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py
index ce7a6eef..d393d0c1 100644
--- a/wqflask/wqflask/search_results.py
+++ b/wqflask/wqflask/search_results.py
@@ -36,7 +36,7 @@ from utility import webqtlUtil
 from dbFunction import webqtlDatabaseFunction
 
 import logging
-logging.basicConfig(filename="/tmp/flask_gn_log", level=logging.INFO)
+logging.basicConfig(filename=app.config['LOGFILE'], level=logging.INFO)
 
 _log = logging.getLogger("search")
 _ch = logging.StreamHandler()
diff --git a/wqflask/wqflask/show_trait/DataEditingPage.py b/wqflask/wqflask/show_trait/DataEditingPage.py
index 610124ae..68de5ae4 100755
--- a/wqflask/wqflask/show_trait/DataEditingPage.py
+++ b/wqflask/wqflask/show_trait/DataEditingPage.py
@@ -227,9 +227,15 @@ class DataEditingPage(templatePage):
         #                                  """)
 
         self.basic_table['columns'] = yaml.load("""
-                                                - All Cases
-                                                - BXD Only
-                                                - Non-BXD Only
+                                                -
+                                                    n: All Cases
+                                                    t: all
+                                                -
+                                                    n: BXD Only
+                                                    t: primary
+                                                -
+                                                    n: Non-BXD Only
+                                                    t: other
                                                 """)
 
         print(pf(self.basic_table))
diff --git a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee
index 2c912f05..bbee9c5a 100644
--- a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee
+++ b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee
@@ -1,6 +1,7 @@
 console.log("start_b")
 
-isNumber = (o) ->
+# this is our isNumber, do not confuse with the underscore.js one
+is_number = (o) ->
     return ! isNaN (o-0) && o != null
 
 $ ->
@@ -20,46 +21,73 @@ $ ->
     $(".stats_mdp").change(stats_mdp_change)
 
 
-    mean = (the_values)->
-        total = 0
-        total += value for value in the_values
-        the_mean = total / the_values.length
-        the_mean = the_mean.toFixed(2)
-        current_mean = parseFloat($("#mean_value").html).toFixed(2)
-        if the_mean != current_mean
-            $("#mean_value").html(the_mean).effect("highlight")
-
-        n_of_samples = the_values.length
-        current_n_of_samples = $("#n_of_samples_value").html()
-        console.log("cnos:", current_n_of_samples)
-        console.log("n_of_samples:", n_of_samples)
-        if n_of_samples != current_n_of_samples
-            $("#n_of_samples_value").html(current_n_of_samples).effect("highlight")
+    update_stat_values = (the_values)->
+        for category in ['primary', 'other', 'all']
+            id = "#" + process_id(category, "mean")
+            console.log("id:", id)
+            total = 0
+            total += value for value in the_values[category]
+            the_mean = total / the_values[category].length
+            the_mean = the_mean.toFixed(2)
+            console.log("aaa")
+            in_box = $(id).html
+            console.log("in_box:", in_box)
+            current_mean = parseFloat($(in_box)).toFixed(2)
+            console.log("the_mean:", the_mean)
+            console.log("current_mean:", current_mean)
+            console.log("aab")
+            if the_mean != current_mean
+                console.log("setting mean")
+                $(id).html(the_mean).effect("highlight")
+                console.log("should be set")
+
+            n_of_samples = the_values[category].length
+            id = "#" + process_id(category, "n_of_samples")
+            console.log("n_of_samples id:", id)
+            current_n_of_samples = $(id).html()
+            console.log("cnos:", current_n_of_samples)
+            console.log("n_of_samples:", n_of_samples)
+            if n_of_samples != current_n_of_samples
+                $(id).html(n_of_samples).effect("highlight")
 
 
 
     edit_data_change = ->
-        the_values = []
-        values = $('#primary').find(".edit_strain_value")
+        the_values =
+            primary: []
+            other: []
+            all: []
+        console.log("at beginning:", the_values)
+        values = $('#value_table').find(".edit_strain_value")
         #console.log("values are:", values)
         for value in values
             real_value = $(value).val()
             #console.log("parent is:", $(value).closest("tr"))
             row = $(value).closest("tr")
+            console.log("row is:", row)
+            console.log("row[0].id is:", row[0].id)
+            category = row[0].id
             checkbox = $(row).find(".edit_strain_checkbox")
             checked = $(checkbox).attr('checked')
             if not checked
                 console.log("Not checked")
                 continue
-            if isNumber(real_value) and real_value != ""
-                the_values.push(parseFloat(real_value))
-        mean(the_values)
+            if is_number(real_value) and real_value != ""
+                real_value = parseFloat(real_value)
+                if _(category).startsWith("Primary")
+                    the_values.primary.push(real_value)
+                else if _(category).startsWith("Other")
+                    the_values.other.push(real_value)
+                the_values.all.push(real_value)
+        console.log("torwads end:", the_values)
+        update_stat_values(the_values)
 
     make_table = ->
         header = "<thead><tr><th>&nbsp;</th>"
         for column in basic_table['columns']
-            the_id = process_id("column_" + column)
-            header += """<th id="#{ the_id }">#{ column }</th>"""
+            console.log("column:", column)
+            the_id = process_id("column", column.t)
+            header += """<th id="#{ the_id }">#{ column.n }</th>"""
         header += "</thead>"
 
         rows = [
@@ -90,9 +118,9 @@ $ ->
             row_line += """<td id="#{ row.vn  }">#{ row.pretty }</td>"""
             for column in basic_table['columns']
                 console.log("apple:", column)
-                the_id = process_id(column + "_" + row.vn)
+                the_id = process_id(column.t, row.vn)
                 console.log("the_id:", the_id)
-                row_line += """<td id="#{ the_id }">&nbsp;</td>"""
+                row_line += """<td id="#{ the_id }">foo</td>"""
             row_line += """</tr>"""
             console.log("row line:", row_line)
             the_rows += row_line
@@ -103,14 +131,22 @@ $ ->
 
 
 
-    process_id = (value) ->
+    process_id = (values...) ->
         ### Make an id or a class valid javascript by, for example, eliminating spaces ###
-        console.log("value:", value)
-        value = value.replace(" ", "_")
-        return value
-
-    $('#primary').change(edit_data_change)
+        processed = ""
+        for value in values
+            console.log("value:", value)
+            value = value.replace(" ", "_")
+            if processed.length
+                processed += "-"
+            processed += value
+        return processed
+
+    _.mixin(_.str.exports());  # Add string fuctions directly to underscore
+    $('#value_table').change(edit_data_change)
     console.log("loaded")
     console.log("basic_table is:", basic_table)
     make_table()
+    edit_data_change()   # Set the values at the beginning
+    #$("#all-mean").html('foobar8')
     console.log("end")
diff --git a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js
index c288f11f..1a067820 100644
--- a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js
+++ b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js
@@ -1,15 +1,16 @@
 // Generated by CoffeeScript 1.3.3
 (function() {
-  var isNumber;
+  var is_number,
+    __slice = [].slice;
 
   console.log("start_b");
 
-  isNumber = function(o) {
+  is_number = function(o) {
     return !isNaN((o - 0) && o !== null);
   };
 
   $(function() {
-    var edit_data_change, hide_tabs, make_table, mean, process_id, stats_mdp_change;
+    var edit_data_change, hide_tabs, make_table, process_id, stats_mdp_change, update_stat_values;
     hide_tabs = function(start) {
       var x, _i, _results;
       _results = [];
@@ -26,46 +27,82 @@
       return $("#stats_tabs" + selected).show();
     };
     $(".stats_mdp").change(stats_mdp_change);
-    mean = function(the_values) {
-      var current_mean, current_n_of_samples, n_of_samples, the_mean, total, value, _i, _len;
-      total = 0;
-      for (_i = 0, _len = the_values.length; _i < _len; _i++) {
-        value = the_values[_i];
-        total += value;
-      }
-      the_mean = total / the_values.length;
-      the_mean = the_mean.toFixed(2);
-      current_mean = parseFloat($("#mean_value").html).toFixed(2);
-      if (the_mean !== current_mean) {
-        $("#mean_value").html(the_mean).effect("highlight");
-      }
-      n_of_samples = the_values.length;
-      current_n_of_samples = $("#n_of_samples_value").html();
-      console.log("cnos:", current_n_of_samples);
-      console.log("n_of_samples:", n_of_samples);
-      if (n_of_samples !== current_n_of_samples) {
-        return $("#n_of_samples_value").html(current_n_of_samples).effect("highlight");
+    update_stat_values = function(the_values) {
+      var category, current_mean, current_n_of_samples, id, in_box, n_of_samples, the_mean, total, value, _i, _j, _len, _len1, _ref, _ref1, _results;
+      _ref = ['primary', 'other', 'all'];
+      _results = [];
+      for (_i = 0, _len = _ref.length; _i < _len; _i++) {
+        category = _ref[_i];
+        id = "#" + process_id(category, "mean");
+        console.log("id:", id);
+        total = 0;
+        _ref1 = the_values[category];
+        for (_j = 0, _len1 = _ref1.length; _j < _len1; _j++) {
+          value = _ref1[_j];
+          total += value;
+        }
+        the_mean = total / the_values[category].length;
+        the_mean = the_mean.toFixed(2);
+        console.log("aaa");
+        in_box = $(id).html;
+        console.log("in_box:", in_box);
+        current_mean = parseFloat($(in_box)).toFixed(2);
+        console.log("the_mean:", the_mean);
+        console.log("current_mean:", current_mean);
+        console.log("aab");
+        if (the_mean !== current_mean) {
+          console.log("setting mean");
+          $(id).html(the_mean).effect("highlight");
+          console.log("should be set");
+        }
+        n_of_samples = the_values[category].length;
+        id = "#" + process_id(category, "n_of_samples");
+        console.log("n_of_samples id:", id);
+        current_n_of_samples = $(id).html();
+        console.log("cnos:", current_n_of_samples);
+        console.log("n_of_samples:", n_of_samples);
+        if (n_of_samples !== current_n_of_samples) {
+          _results.push($(id).html(n_of_samples).effect("highlight"));
+        } else {
+          _results.push(void 0);
+        }
       }
+      return _results;
     };
     edit_data_change = function() {
-      var checkbox, checked, real_value, row, the_values, value, values, _i, _len;
-      the_values = [];
-      values = $('#primary').find(".edit_strain_value");
+      var category, checkbox, checked, real_value, row, the_values, value, values, _i, _len;
+      the_values = {
+        primary: [],
+        other: [],
+        all: []
+      };
+      console.log("at beginning:", the_values);
+      values = $('#value_table').find(".edit_strain_value");
       for (_i = 0, _len = values.length; _i < _len; _i++) {
         value = values[_i];
         real_value = $(value).val();
         row = $(value).closest("tr");
+        console.log("row is:", row);
+        console.log("row[0].id is:", row[0].id);
+        category = row[0].id;
         checkbox = $(row).find(".edit_strain_checkbox");
         checked = $(checkbox).attr('checked');
         if (!checked) {
           console.log("Not checked");
           continue;
         }
-        if (isNumber(real_value) && real_value !== "") {
-          the_values.push(parseFloat(real_value));
+        if (is_number(real_value) && real_value !== "") {
+          real_value = parseFloat(real_value);
+          if (_(category).startsWith("Primary")) {
+            the_values.primary.push(real_value);
+          } else if (_(category).startsWith("Other")) {
+            the_values.other.push(real_value);
+          }
+          the_values.all.push(real_value);
         }
       }
-      return mean(the_values);
+      console.log("torwads end:", the_values);
+      return update_stat_values(the_values);
     };
     make_table = function() {
       var column, header, row, row_line, rows, table, the_id, the_rows, _i, _j, _k, _len, _len1, _len2, _ref, _ref1;
@@ -73,8 +110,9 @@
       _ref = basic_table['columns'];
       for (_i = 0, _len = _ref.length; _i < _len; _i++) {
         column = _ref[_i];
-        the_id = process_id("column_" + column);
-        header += "<th id=\"" + the_id + "\">" + column + "</th>";
+        console.log("column:", column);
+        the_id = process_id("column", column.t);
+        header += "<th id=\"" + the_id + "\">" + column.n + "</th>";
       }
       header += "</thead>";
       rows = [
@@ -104,9 +142,9 @@
         for (_k = 0, _len2 = _ref1.length; _k < _len2; _k++) {
           column = _ref1[_k];
           console.log("apple:", column);
-          the_id = process_id(column + "_" + row.vn);
+          the_id = process_id(column.t, row.vn);
           console.log("the_id:", the_id);
-          row_line += "<td id=\"" + the_id + "\">&nbsp;</td>";
+          row_line += "<td id=\"" + the_id + "\">foo</td>";
         }
         row_line += "</tr>";
         console.log("row line:", row_line);
@@ -117,17 +155,30 @@
       console.log("table is:", table);
       return $("#stats_table").append(table);
     };
-    process_id = function(value) {
+    process_id = function() {
+      var processed, value, values, _i, _len;
+      values = 1 <= arguments.length ? __slice.call(arguments, 0) : [];
       /* Make an id or a class valid javascript by, for example, eliminating spaces
       */
-      console.log("value:", value);
-      value = value.replace(" ", "_");
-      return value;
+
+      processed = "";
+      for (_i = 0, _len = values.length; _i < _len; _i++) {
+        value = values[_i];
+        console.log("value:", value);
+        value = value.replace(" ", "_");
+        if (processed.length) {
+          processed += "-";
+        }
+        processed += value;
+      }
+      return processed;
     };
-    $('#primary').change(edit_data_change);
+    _.mixin(_.str.exports());
+    $('#value_table').change(edit_data_change);
     console.log("loaded");
     console.log("basic_table is:", basic_table);
     make_table();
+    edit_data_change();
     return console.log("end");
   });
 
diff --git a/wqflask/wqflask/static/new/js_external/underscore-min.js b/wqflask/wqflask/static/new/js_external/underscore-min.js
new file mode 100644
index 00000000..5a0cb3b0
--- /dev/null
+++ b/wqflask/wqflask/static/new/js_external/underscore-min.js
@@ -0,0 +1,32 @@
+// Underscore.js 1.3.3
+// (c) 2009-2012 Jeremy Ashkenas, DocumentCloud Inc.
+// Underscore is freely distributable under the MIT license.
+// Portions of Underscore are inspired or borrowed from Prototype,
+// Oliver Steele's Functional, and John Resig's Micro-Templating.
+// For all details and documentation:
+// http://documentcloud.github.com/underscore
+(function(){function r(a,c,d){if(a===c)return 0!==a||1/a==1/c;if(null==a||null==c)return a===c;a._chain&&(a=a._wrapped);c._chain&&(c=c._wrapped);if(a.isEqual&&b.isFunction(a.isEqual))return a.isEqual(c);if(c.isEqual&&b.isFunction(c.isEqual))return c.isEqual(a);var e=l.call(a);if(e!=l.call(c))return!1;switch(e){case "[object String]":return a==""+c;case "[object Number]":return a!=+a?c!=+c:0==a?1/a==1/c:a==+c;case "[object Date]":case "[object Boolean]":return+a==+c;case "[object RegExp]":return a.source==
+c.source&&a.global==c.global&&a.multiline==c.multiline&&a.ignoreCase==c.ignoreCase}if("object"!=typeof a||"object"!=typeof c)return!1;for(var f=d.length;f--;)if(d[f]==a)return!0;d.push(a);var f=0,g=!0;if("[object Array]"==e){if(f=a.length,g=f==c.length)for(;f--&&(g=f in a==f in c&&r(a[f],c[f],d)););}else{if("constructor"in a!="constructor"in c||a.constructor!=c.constructor)return!1;for(var h in a)if(b.has(a,h)&&(f++,!(g=b.has(c,h)&&r(a[h],c[h],d))))break;if(g){for(h in c)if(b.has(c,h)&&!f--)break;
+g=!f}}d.pop();return g}var s=this,I=s._,o={},k=Array.prototype,p=Object.prototype,i=k.slice,J=k.unshift,l=p.toString,K=p.hasOwnProperty,y=k.forEach,z=k.map,A=k.reduce,B=k.reduceRight,C=k.filter,D=k.every,E=k.some,q=k.indexOf,F=k.lastIndexOf,p=Array.isArray,L=Object.keys,t=Function.prototype.bind,b=function(a){return new m(a)};"undefined"!==typeof exports?("undefined"!==typeof module&&module.exports&&(exports=module.exports=b),exports._=b):s._=b;b.VERSION="1.3.3";var j=b.each=b.forEach=function(a,
+c,d){if(a!=null)if(y&&a.forEach===y)a.forEach(c,d);else if(a.length===+a.length)for(var e=0,f=a.length;e<f;e++){if(e in a&&c.call(d,a[e],e,a)===o)break}else for(e in a)if(b.has(a,e)&&c.call(d,a[e],e,a)===o)break};b.map=b.collect=function(a,c,b){var e=[];if(a==null)return e;if(z&&a.map===z)return a.map(c,b);j(a,function(a,g,h){e[e.length]=c.call(b,a,g,h)});if(a.length===+a.length)e.length=a.length;return e};b.reduce=b.foldl=b.inject=function(a,c,d,e){var f=arguments.length>2;a==null&&(a=[]);if(A&&
+a.reduce===A){e&&(c=b.bind(c,e));return f?a.reduce(c,d):a.reduce(c)}j(a,function(a,b,i){if(f)d=c.call(e,d,a,b,i);else{d=a;f=true}});if(!f)throw new TypeError("Reduce of empty array with no initial value");return d};b.reduceRight=b.foldr=function(a,c,d,e){var f=arguments.length>2;a==null&&(a=[]);if(B&&a.reduceRight===B){e&&(c=b.bind(c,e));return f?a.reduceRight(c,d):a.reduceRight(c)}var g=b.toArray(a).reverse();e&&!f&&(c=b.bind(c,e));return f?b.reduce(g,c,d,e):b.reduce(g,c)};b.find=b.detect=function(a,
+c,b){var e;G(a,function(a,g,h){if(c.call(b,a,g,h)){e=a;return true}});return e};b.filter=b.select=function(a,c,b){var e=[];if(a==null)return e;if(C&&a.filter===C)return a.filter(c,b);j(a,function(a,g,h){c.call(b,a,g,h)&&(e[e.length]=a)});return e};b.reject=function(a,c,b){var e=[];if(a==null)return e;j(a,function(a,g,h){c.call(b,a,g,h)||(e[e.length]=a)});return e};b.every=b.all=function(a,c,b){var e=true;if(a==null)return e;if(D&&a.every===D)return a.every(c,b);j(a,function(a,g,h){if(!(e=e&&c.call(b,
+a,g,h)))return o});return!!e};var G=b.some=b.any=function(a,c,d){c||(c=b.identity);var e=false;if(a==null)return e;if(E&&a.some===E)return a.some(c,d);j(a,function(a,b,h){if(e||(e=c.call(d,a,b,h)))return o});return!!e};b.include=b.contains=function(a,c){var b=false;if(a==null)return b;if(q&&a.indexOf===q)return a.indexOf(c)!=-1;return b=G(a,function(a){return a===c})};b.invoke=function(a,c){var d=i.call(arguments,2);return b.map(a,function(a){return(b.isFunction(c)?c||a:a[c]).apply(a,d)})};b.pluck=
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diff --git a/wqflask/wqflask/templates/base.html b/wqflask/wqflask/templates/base.html
index 4050164d..7d9218ed 100644
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 					<Strong>Help</Strong></Span>
 					&nbsp;&nbsp;&nbsp;|&nbsp;&nbsp;&nbsp;
 					<Span Id= "menu_grp4" onmouseover="A_MENUS[0].onmouseover(grpObj['menu_grp4'])"  onmouseout="A_MENUS[0].onmouseout(grpObj['menu_grp4'])" style="font-size:12px;font-family:verdana;color:#0000ae">
-					<A Href="/whats_new.html"  style="font-size:12px;font-family:verdana;color:#0000ae">
+					<A Href="/whats_new"  style="font-size:12px;font-family:verdana;color:#0000ae">
 					<Strong>News</Strong></A></Span>
 					&nbsp;&nbsp;&nbsp;|&nbsp;&nbsp;&nbsp;
 					<Span Id= "menu_grp5" onmouseover="A_MENUS[0].onmouseover(grpObj['menu_grp5'])"  onmouseout="A_MENUS[0].onmouseout(grpObj['menu_grp5'])" style="font-size:12px;font-family:verdana;color:#0000ae">
diff --git a/wqflask/wqflask/templates/trait_data_and_analysis.html b/wqflask/wqflask/templates/trait_data_and_analysis.html
index 47d0827b..c951156a 100644
--- a/wqflask/wqflask/templates/trait_data_and_analysis.html
+++ b/wqflask/wqflask/templates/trait_data_and_analysis.html
@@ -3018,7 +3018,7 @@
 
                 <p id="sectionbody5"></p>
 
-                <table class="target5" cellpadding="0" cellspacing="0" width="100%">
+                <table class="target5" id="value_table" cellpadding="0" cellspacing="0" width="100%">
                   <tr>
                     <td>
                       <div>
@@ -3118,7 +3118,8 @@
 		basic_table = {{ basic_table | safe }}
 	</script>
 
-	<script type="text/javascript" src="/static/new/packages/DataTables/js/jquery.dataTables.min.js"></script>
+	<script type="text/javascript" src="/static/new/js_external/underscore-min.js"></script>-->
+	<script type="text/javascript" src="/static/new/js_external/underscore.string.min.js"></script>
 	<script type="text/javascript" src="/static/new/javascript/trait_data_and_analysis.js"></script>
 
 
diff --git a/wqflask/wqflask/templates/whats_new.html b/wqflask/wqflask/templates/whats_new.html
new file mode 100644
index 00000000..dca9e7b3
--- /dev/null
+++ b/wqflask/wqflask/templates/whats_new.html
@@ -0,0 +1,29 @@
+{% extends "base.html" %}
+{% block title %}GeneNetwork{% endblock %}
+{% block content %}
+<!-- Start of body -->
+
+	<TR>
+		<TD bgColor=#eeeeee class="solidBorder">
+            <Table width= "100%" cellSpacing=0 cellPadding=5><TR>
+                <!-- Body Start from Here -->
+                <TD valign="top" height="200" width="100%" bgcolor="#eeeeee">
+
+                <P class="title">Latest Updates and News from Genenetwork  <A HREF="/webqtl/main.py?FormID=editHtml"><img src="/images/modify.gif" alt="modify this page" border= 0 valign="middle"></A></P>
+
+
+                {% for news_item in news_items %}
+                    <h4>{{ news_item.title }} ({{ news_item.date }})</h4>
+                    {{ news_item.details | safe }}
+                    <br /><br />
+                {% endfor %}
+
+            <p />
+
+		</TD>
+	</TR>
+
+
+
+<!-- End of body -->
+{% endblock %}
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index 852e6a16..1ed3c1fd 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -15,6 +15,8 @@ from base import webqtlFormData
 
 from pprint import pformat as pf
 
+import yaml
+
 print("latest blue")
 
 @app.route("/")
@@ -53,7 +55,16 @@ def search():
         return render_template("search_result_page.html", **the_search.__dict__)
 
 
-
+@app.route("/whats_new")
+def whats_new():
+    #variables = whats_new.whats_new()
+    with open("/home/sam/gene/wqflask/wqflask/yaml_data/whats_new.yaml") as fh:
+        contents = fh.read()
+        yamilized = yaml.safe_load(contents)
+        news_items = yamilized['news']
+    for news_item in news_items:
+        print("\nnews_item is: %s\n" % (news_item))
+    return render_template("whats_new.html", news_items=news_items)
 
 @app.route("/showDatabaseBXD")
 def showDatabaseBXD():
diff --git a/wqflask/wqflask/yaml_data/whats_new.yaml b/wqflask/wqflask/yaml_data/whats_new.yaml
new file mode 100644
index 00000000..8f41a8f2
--- /dev/null
+++ b/wqflask/wqflask/yaml_data/whats_new.yaml
@@ -0,0 +1,26 @@
+news:
+-
+    date: 2012-1-20
+    title: Mouse SNPs from dbSNP have been added to GeneNetwork
+    details: 
+        10 million mouse SNPs from dbSNP (build 128) have been added to Variant Browser.
+        They could be searched by name (e.g. rs31192936) (Implemented by Xiaodong Zhou and Ning Liu).
+
+-
+    date: 2012-1-20
+    title: Literature correlation has been update to 2011 version
+    details: 
+        Dr. Ramin Homayouni and Dr. Lijing Xu kindly provide the 2011 version of mouse gene-gene
+        literature correlation matrix to GeneNetwork. (Implemented by Xiaodong Zhou).
+
+-
+    date: 2012-1-16
+    title: Expression data set for EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA ** has been entered in GeneNetwork
+    details: 
+        Laboratory of Integrative and Systems Physiology
+        (<a href="http://auwerx-lab.epfl.ch/">LISP</a>).
+        This data set is not yet freely available for global analysis.
+        This data set has not yet been used or described in any publication.
+        Please contact Johan Auwerx or Evan Williams at evan.williams@epfl.ch
+        regarding use of these data. (Implemented by J Auwerx, E Williams, LA Rose,
+        RW Williams and A Centeno).
\ No newline at end of file