From ce3364aad83938f1d84234aef6f4a19277637116 Mon Sep 17 00:00:00 2001 From: Sam Ockman Date: Sat, 21 Jul 2012 19:39:31 -0400 Subject: checkpoint --- wqflask/wqflask/show_trait/DataEditingPage.py | 12 ++++++--- .../new/javascript/trait_data_and_analysis.coffee | 20 +++++++++------ .../new/javascript/trait_data_and_analysis.js | 29 ++++++++++++++++------ 3 files changed, 43 insertions(+), 18 deletions(-) diff --git a/wqflask/wqflask/show_trait/DataEditingPage.py b/wqflask/wqflask/show_trait/DataEditingPage.py index 610124ae..68de5ae4 100755 --- a/wqflask/wqflask/show_trait/DataEditingPage.py +++ b/wqflask/wqflask/show_trait/DataEditingPage.py @@ -227,9 +227,15 @@ class DataEditingPage(templatePage): # """) self.basic_table['columns'] = yaml.load(""" - - All Cases - - BXD Only - - Non-BXD Only + - + n: All Cases + t: all + - + n: BXD Only + t: primary + - + n: Non-BXD Only + t: other """) print(pf(self.basic_table)) diff --git a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee index 2c912f05..1f59788c 100644 --- a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee +++ b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee @@ -58,8 +58,9 @@ $ -> make_table = -> header = " " for column in basic_table['columns'] - the_id = process_id("column_" + column) - header += """#{ column }""" + console.log("column:", column) + the_id = process_id("column", column.t) + header += """#{ column.n }""" header += "" rows = [ @@ -90,7 +91,7 @@ $ -> row_line += """#{ row.pretty }""" for column in basic_table['columns'] console.log("apple:", column) - the_id = process_id(column + "_" + row.vn) + the_id = process_id(column.t, row.vn) console.log("the_id:", the_id) row_line += """ """ row_line += """""" @@ -103,11 +104,16 @@ $ -> - process_id = (value) -> + process_id = (values...) -> ### Make an id or a class valid javascript by, for example, eliminating spaces ### - console.log("value:", value) - value = value.replace(" ", "_") - return value + processed = "" + for value in values + console.log("value:", value) + value = value.replace(" ", "_") + if processed.length + processed += ":" + processed += value + return processed $('#primary').change(edit_data_change) console.log("loaded") diff --git a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js index c288f11f..e9a141a3 100644 --- a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js +++ b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js @@ -1,6 +1,7 @@ // Generated by CoffeeScript 1.3.3 (function() { - var isNumber; + var isNumber, + __slice = [].slice; console.log("start_b"); @@ -73,8 +74,9 @@ _ref = basic_table['columns']; for (_i = 0, _len = _ref.length; _i < _len; _i++) { column = _ref[_i]; - the_id = process_id("column_" + column); - header += "" + column + ""; + console.log("column:", column); + the_id = process_id("column", column.t); + header += "" + column.n + ""; } header += ""; rows = [ @@ -104,7 +106,7 @@ for (_k = 0, _len2 = _ref1.length; _k < _len2; _k++) { column = _ref1[_k]; console.log("apple:", column); - the_id = process_id(column + "_" + row.vn); + the_id = process_id(column.t, row.vn); console.log("the_id:", the_id); row_line += " "; } @@ -117,12 +119,23 @@ console.log("table is:", table); return $("#stats_table").append(table); }; - process_id = function(value) { + process_id = function() { + var processed, value, values, _i, _len; + values = 1 <= arguments.length ? __slice.call(arguments, 0) : []; /* Make an id or a class valid javascript by, for example, eliminating spaces */ - console.log("value:", value); - value = value.replace(" ", "_"); - return value; + + processed = ""; + for (_i = 0, _len = values.length; _i < _len; _i++) { + value = values[_i]; + console.log("value:", value); + value = value.replace(" ", "_"); + if (processed.length) { + processed += ":"; + } + processed += value; + } + return processed; }; $('#primary').change(edit_data_change); console.log("loaded"); -- cgit v1.2.3 From 9379ae816f37821af2289a434c4ea35550b9e34e Mon Sep 17 00:00:00 2001 From: Sam Ockman Date: Sun, 22 Jul 2012 00:44:40 -0400 Subject: mean finally working? --- .../new/javascript/trait_data_and_analysis.coffee | 74 ++++++++++++----- .../new/javascript/trait_data_and_analysis.js | 95 +++++++++++++++------- .../static/new/js_external/underscore-min.js | 32 ++++++++ .../new/js_external/underscore.string.min.js | 1 + 4 files changed, 152 insertions(+), 50 deletions(-) create mode 100644 wqflask/wqflask/static/new/js_external/underscore-min.js create mode 100644 wqflask/wqflask/static/new/js_external/underscore.string.min.js diff --git a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee index 1f59788c..e807ea61 100644 --- a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee +++ b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee @@ -1,6 +1,7 @@ console.log("start_b") -isNumber = (o) -> +# this is our isNumber, do not confuse with the underscore.js one +is_number = (o) -> return ! isNaN (o-0) && o != null $ -> @@ -21,38 +22,64 @@ $ -> mean = (the_values)-> - total = 0 - total += value for value in the_values - the_mean = total / the_values.length - the_mean = the_mean.toFixed(2) - current_mean = parseFloat($("#mean_value").html).toFixed(2) - if the_mean != current_mean - $("#mean_value").html(the_mean).effect("highlight") - - n_of_samples = the_values.length - current_n_of_samples = $("#n_of_samples_value").html() - console.log("cnos:", current_n_of_samples) - console.log("n_of_samples:", n_of_samples) - if n_of_samples != current_n_of_samples - $("#n_of_samples_value").html(current_n_of_samples).effect("highlight") + for category in ['primary', 'other', 'all'] + id = "#" + process_id(category, "mean") + console.log("id:", id) + total = 0 + total += value for value in the_values[category] + the_mean = total / the_values[category].length + the_mean = the_mean.toFixed(2) + console.log("aaa") + in_box = $(id).html + console.log("in_box:", in_box) + current_mean = parseFloat($(in_box)).toFixed(2) + console.log("the_mean:", the_mean) + console.log("current_mean:", current_mean) + console.log("aab") + if the_mean != current_mean + console.log("setting mean") + $(id).html(the_mean) + console.log("should be set") + if current_mean and the_mean != current_mean + $(id).effect("highlight") + + n_of_samples = the_values[category].length + current_n_of_samples = $("#n_of_samples_value").html() + console.log("cnos:", current_n_of_samples) + console.log("n_of_samples:", n_of_samples) + if n_of_samples != current_n_of_samples + $("#n_of_samples_value").html(current_n_of_samples).effect("highlight") edit_data_change = -> - the_values = [] - values = $('#primary').find(".edit_strain_value") + the_values = + primary: [] + other: [] + all: [] + console.log("at beginning:", the_values) + values = $('#value_table').find(".edit_strain_value") #console.log("values are:", values) for value in values real_value = $(value).val() #console.log("parent is:", $(value).closest("tr")) row = $(value).closest("tr") + console.log("row is:", row) + console.log("row[0].id is:", row[0].id) + category = row[0].id checkbox = $(row).find(".edit_strain_checkbox") checked = $(checkbox).attr('checked') if not checked console.log("Not checked") continue - if isNumber(real_value) and real_value != "" - the_values.push(parseFloat(real_value)) + if is_number(real_value) and real_value != "" + real_value = parseFloat(real_value) + if _(category).startsWith("Primary") + the_values.primary.push(real_value) + else if _(category).startsWith("Other") + the_values.other.push(real_value) + the_values.all.push(real_value) + console.log("torwads end:", the_values) mean(the_values) make_table = -> @@ -93,7 +120,7 @@ $ -> console.log("apple:", column) the_id = process_id(column.t, row.vn) console.log("the_id:", the_id) - row_line += """ """ + row_line += """foo""" row_line += """""" console.log("row line:", row_line) the_rows += row_line @@ -111,12 +138,15 @@ $ -> console.log("value:", value) value = value.replace(" ", "_") if processed.length - processed += ":" + processed += "-" processed += value return processed - $('#primary').change(edit_data_change) + _.mixin(_.str.exports()); # Add string fuctions directly to underscore + $('#value_table').change(edit_data_change) console.log("loaded") console.log("basic_table is:", basic_table) make_table() + edit_data_change() # Set the values at the beginning + #$("#all-mean").html('foobar8') console.log("end") diff --git a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js index e9a141a3..035b5c09 100644 --- a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js +++ b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js @@ -1,11 +1,11 @@ // Generated by CoffeeScript 1.3.3 (function() { - var isNumber, + var is_number, __slice = [].slice; console.log("start_b"); - isNumber = function(o) { + is_number = function(o) { return !isNaN((o - 0) && o !== null); }; @@ -28,44 +28,81 @@ }; $(".stats_mdp").change(stats_mdp_change); mean = function(the_values) { - var current_mean, current_n_of_samples, n_of_samples, the_mean, total, value, _i, _len; - total = 0; - for (_i = 0, _len = the_values.length; _i < _len; _i++) { - value = the_values[_i]; - total += value; - } - the_mean = total / the_values.length; - the_mean = the_mean.toFixed(2); - current_mean = parseFloat($("#mean_value").html).toFixed(2); - if (the_mean !== current_mean) { - $("#mean_value").html(the_mean).effect("highlight"); - } - n_of_samples = the_values.length; - current_n_of_samples = $("#n_of_samples_value").html(); - console.log("cnos:", current_n_of_samples); - console.log("n_of_samples:", n_of_samples); - if (n_of_samples !== current_n_of_samples) { - return $("#n_of_samples_value").html(current_n_of_samples).effect("highlight"); + var category, current_mean, current_n_of_samples, id, in_box, n_of_samples, the_mean, total, value, _i, _j, _len, _len1, _ref, _ref1, _results; + _ref = ['primary', 'other', 'all']; + _results = []; + for (_i = 0, _len = _ref.length; _i < _len; _i++) { + category = _ref[_i]; + id = "#" + process_id(category, "mean"); + console.log("id:", id); + total = 0; + _ref1 = the_values[category]; + for (_j = 0, _len1 = _ref1.length; _j < _len1; _j++) { + value = _ref1[_j]; + total += value; + } + the_mean = total / the_values[category].length; + the_mean = the_mean.toFixed(2); + console.log("aaa"); + in_box = $(id).html; + console.log("in_box:", in_box); + current_mean = parseFloat($(in_box)).toFixed(2); + console.log("the_mean:", the_mean); + console.log("current_mean:", current_mean); + console.log("aab"); + if (the_mean !== current_mean) { + console.log("setting mean"); + $(id).html(the_mean); + console.log("should be set"); + } + if (current_mean && the_mean !== current_mean) { + $(id).effect("highlight"); + } + n_of_samples = the_values[category].length; + current_n_of_samples = $("#n_of_samples_value").html(); + console.log("cnos:", current_n_of_samples); + console.log("n_of_samples:", n_of_samples); + if (n_of_samples !== current_n_of_samples) { + _results.push($("#n_of_samples_value").html(current_n_of_samples).effect("highlight")); + } else { + _results.push(void 0); + } } + return _results; }; edit_data_change = function() { - var checkbox, checked, real_value, row, the_values, value, values, _i, _len; - the_values = []; - values = $('#primary').find(".edit_strain_value"); + var category, checkbox, checked, real_value, row, the_values, value, values, _i, _len; + the_values = { + primary: [], + other: [], + all: [] + }; + console.log("at beginning:", the_values); + values = $('#value_table').find(".edit_strain_value"); for (_i = 0, _len = values.length; _i < _len; _i++) { value = values[_i]; real_value = $(value).val(); row = $(value).closest("tr"); + console.log("row is:", row); + console.log("row[0].id is:", row[0].id); + category = row[0].id; checkbox = $(row).find(".edit_strain_checkbox"); checked = $(checkbox).attr('checked'); if (!checked) { console.log("Not checked"); continue; } - if (isNumber(real_value) && real_value !== "") { - the_values.push(parseFloat(real_value)); + if (is_number(real_value) && real_value !== "") { + real_value = parseFloat(real_value); + if (_(category).startsWith("Primary")) { + the_values.primary.push(real_value); + } else if (_(category).startsWith("Other")) { + the_values.other.push(real_value); + } + the_values.all.push(real_value); } } + console.log("torwads end:", the_values); return mean(the_values); }; make_table = function() { @@ -108,7 +145,7 @@ console.log("apple:", column); the_id = process_id(column.t, row.vn); console.log("the_id:", the_id); - row_line += " "; + row_line += "foo"; } row_line += ""; console.log("row line:", row_line); @@ -131,16 +168,18 @@ console.log("value:", value); value = value.replace(" ", "_"); if (processed.length) { - processed += ":"; + processed += "-"; } processed += value; } return processed; }; - $('#primary').change(edit_data_change); + _.mixin(_.str.exports()); + $('#value_table').change(edit_data_change); console.log("loaded"); console.log("basic_table is:", basic_table); make_table(); + edit_data_change(); return console.log("end"); }); diff --git a/wqflask/wqflask/static/new/js_external/underscore-min.js b/wqflask/wqflask/static/new/js_external/underscore-min.js new file mode 100644 index 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.../static/new/javascript/trait_data_and_analysis.coffee | 10 +++++----- .../wqflask/static/new/javascript/trait_data_and_analysis.js | 11 +++++------ wqflask/wqflask/templates/trait_data_and_analysis.html | 5 +++-- 3 files changed, 13 insertions(+), 13 deletions(-) diff --git a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee index e807ea61..03a0018b 100644 --- a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee +++ b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee @@ -38,17 +38,17 @@ $ -> console.log("aab") if the_mean != current_mean console.log("setting mean") - $(id).html(the_mean) + $(id).html(the_mean).effect("highlight") console.log("should be set") - if current_mean and the_mean != current_mean - $(id).effect("highlight") n_of_samples = the_values[category].length - current_n_of_samples = $("#n_of_samples_value").html() + id = "#" + process_id(category, "n_of_samples") + console.log("n_of_samples id:", id) + current_n_of_samples = $(id).html() console.log("cnos:", current_n_of_samples) console.log("n_of_samples:", n_of_samples) if n_of_samples != current_n_of_samples - $("#n_of_samples_value").html(current_n_of_samples).effect("highlight") + $(id).html(n_of_samples).effect("highlight") diff --git a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js index 035b5c09..cf034fe1 100644 --- a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js +++ b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js @@ -52,18 +52,17 @@ console.log("aab"); if (the_mean !== current_mean) { console.log("setting mean"); - $(id).html(the_mean); + $(id).html(the_mean).effect("highlight"); console.log("should be set"); } - if (current_mean && the_mean !== current_mean) { - $(id).effect("highlight"); - } n_of_samples = the_values[category].length; - current_n_of_samples = $("#n_of_samples_value").html(); + id = "#" + process_id(category, "n_of_samples"); + console.log("n_of_samples id:", id); + current_n_of_samples = $(id).html(); console.log("cnos:", current_n_of_samples); console.log("n_of_samples:", n_of_samples); if (n_of_samples !== current_n_of_samples) { - _results.push($("#n_of_samples_value").html(current_n_of_samples).effect("highlight")); + _results.push($(id).html(n_of_samples).effect("highlight")); } else { _results.push(void 0); } diff --git a/wqflask/wqflask/templates/trait_data_and_analysis.html b/wqflask/wqflask/templates/trait_data_and_analysis.html index 47d0827b..c951156a 100644 --- a/wqflask/wqflask/templates/trait_data_and_analysis.html +++ b/wqflask/wqflask/templates/trait_data_and_analysis.html @@ -3018,7 +3018,7 @@

- +
" diff --git a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js index cf034fe1..1a067820 100644 --- a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js +++ b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js @@ -10,7 +10,7 @@ }; $(function() { - var edit_data_change, hide_tabs, make_table, mean, process_id, stats_mdp_change; + var edit_data_change, hide_tabs, make_table, process_id, stats_mdp_change, update_stat_values; hide_tabs = function(start) { var x, _i, _results; _results = []; @@ -27,7 +27,7 @@ return $("#stats_tabs" + selected).show(); }; $(".stats_mdp").change(stats_mdp_change); - mean = function(the_values) { + update_stat_values = function(the_values) { var category, current_mean, current_n_of_samples, id, in_box, n_of_samples, the_mean, total, value, _i, _j, _len, _len1, _ref, _ref1, _results; _ref = ['primary', 'other', 'all']; _results = []; @@ -102,7 +102,7 @@ } } console.log("torwads end:", the_values); - return mean(the_values); + return update_stat_values(the_values); }; make_table = function() { var column, header, row, row_line, rows, table, the_id, the_rows, _i, _j, _k, _len, _len1, _len2, _ref, _ref1; -- cgit v1.2.3 From 8c7a90ac6aef00d4ed64ed1789cf4722a8465a8e Mon Sep 17 00:00:00 2001 From: Sam Ockman Date: Mon, 13 Aug 2012 17:42:28 -0400 Subject: Added whats_new template --- wqflask/wqflask/templates/base.html | 2 +- wqflask/wqflask/templates/whats_new.html | 25 +++++++++++++++++++++++++ wqflask/wqflask/views.py | 5 ++++- 3 files changed, 30 insertions(+), 2 deletions(-) create mode 100644 wqflask/wqflask/templates/whats_new.html diff --git a/wqflask/wqflask/templates/base.html b/wqflask/wqflask/templates/base.html index 4050164d..7d9218ed 100644 --- a/wqflask/wqflask/templates/base.html +++ b/wqflask/wqflask/templates/base.html @@ -112,7 +112,7 @@ Help    |    - + News    |    diff --git a/wqflask/wqflask/templates/whats_new.html b/wqflask/wqflask/templates/whats_new.html new file mode 100644 index 00000000..75a08dcd --- /dev/null +++ b/wqflask/wqflask/templates/whats_new.html @@ -0,0 +1,25 @@ +{% extends "base.html" %} +{% block title %}GeneNetwork{% endblock %} +{% block content %} + + + +
@@ -3118,7 +3118,8 @@ basic_table = {{ basic_table | safe }} - + --> + -- cgit v1.2.3 From a01f09ef2d008f6232e50d13da2080c0d0556cf6 Mon Sep 17 00:00:00 2001 From: Sam Ockman Date: Mon, 13 Aug 2012 15:54:51 -0400 Subject: Small javascript changes --- .../wqflask/static/new/javascript/trait_data_and_analysis.coffee | 4 ++-- wqflask/wqflask/static/new/javascript/trait_data_and_analysis.js | 6 +++--- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee index 03a0018b..bbee9c5a 100644 --- a/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee +++ b/wqflask/wqflask/static/new/javascript/trait_data_and_analysis.coffee @@ -21,7 +21,7 @@ $ -> $(".stats_mdp").change(stats_mdp_change) - mean = (the_values)-> + update_stat_values = (the_values)-> for category in ['primary', 'other', 'all'] id = "#" + process_id(category, "mean") console.log("id:", id) @@ -80,7 +80,7 @@ $ -> the_values.other.push(real_value) the_values.all.push(real_value) console.log("torwads end:", the_values) - mean(the_values) + update_stat_values(the_values) make_table = -> header = "
 
+ + + + + + + + +{% endblock %} diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index 06d8227c..34c78f54 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -52,7 +52,10 @@ def search(): return render_template("search_result_page.html", **the_search.__dict__) - +@app.route("/whats_new") +def whats_new(): + #variables = whats_new.whats_new() + return render_template("whats_new.html") @app.route("/showDatabaseBXD") def showDatabaseBXD(): -- cgit v1.2.3 From c19117809b845849d1f7962b19eb16aa529c5975 Mon Sep 17 00:00:00 2001 From: Sam Ockman Date: Mon, 13 Aug 2012 18:45:31 -0400 Subject: news is now working --- wqflask/wqflask/templates/whats_new.html | 6 +++++- wqflask/wqflask/views.py | 10 +++++++++- wqflask/wqflask/yaml_data/whats_new.yaml | 26 ++++++++++++++++++++++++++ 3 files changed, 40 insertions(+), 2 deletions(-) create mode 100644 wqflask/wqflask/yaml_data/whats_new.yaml diff --git a/wqflask/wqflask/templates/whats_new.html b/wqflask/wqflask/templates/whats_new.html index 75a08dcd..dca9e7b3 100644 --- a/wqflask/wqflask/templates/whats_new.html +++ b/wqflask/wqflask/templates/whats_new.html @@ -12,7 +12,11 @@

Latest Updates and News from Genenetwork modify this page

- This is where we will keep what's new + {% for news_item in news_items %} +

{{ news_item.title }} ({{ news_item.date }})

+ {{ news_item.details | safe }} +

+ {% endfor %}

diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index 34c78f54..2b6fa9b1 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -15,6 +15,8 @@ from base import webqtlFormData from pprint import pformat as pf +import yaml + print("latest blue") @app.route("/") @@ -55,7 +57,13 @@ def search(): @app.route("/whats_new") def whats_new(): #variables = whats_new.whats_new() - return render_template("whats_new.html") + with open("/home/sam/gene/wqflask/wqflask/yaml_data/whats_new.yaml") as fh: + contents = fh.read() + yamilized = yaml.safe_load(contents) + news_items = yamilized['news'] + for news_item in news_items: + print("\nnews_item is: %s\n" % (news_item)) + return render_template("whats_new.html", news_items=news_items) @app.route("/showDatabaseBXD") def showDatabaseBXD(): diff --git a/wqflask/wqflask/yaml_data/whats_new.yaml b/wqflask/wqflask/yaml_data/whats_new.yaml new file mode 100644 index 00000000..8f41a8f2 --- /dev/null +++ b/wqflask/wqflask/yaml_data/whats_new.yaml @@ -0,0 +1,26 @@ +news: +- + date: 2012-1-20 + title: Mouse SNPs from dbSNP have been added to GeneNetwork + details: + 10 million mouse SNPs from dbSNP (build 128) have been added to Variant Browser. + They could be searched by name (e.g. rs31192936) (Implemented by Xiaodong Zhou and Ning Liu). + +- + date: 2012-1-20 + title: Literature correlation has been update to 2011 version + details: + Dr. Ramin Homayouni and Dr. Lijing Xu kindly provide the 2011 version of mouse gene-gene + literature correlation matrix to GeneNetwork. (Implemented by Xiaodong Zhou). + +- + date: 2012-1-16 + title: Expression data set for EPFL/LISP BXD Muscle Affy Mouse Gene 1.0 ST (Dec11) RMA ** has been entered in GeneNetwork + details: + Laboratory of Integrative and Systems Physiology + (LISP). + This data set is not yet freely available for global analysis. + This data set has not yet been used or described in any publication. + Please contact Johan Auwerx or Evan Williams at evan.williams@epfl.ch + regarding use of these data. (Implemented by J Auwerx, E Williams, LA Rose, + RW Williams and A Centeno). \ No newline at end of file -- cgit v1.2.3 From 300f2fec72ce8e7143e0c954074690224f6d0f70 Mon Sep 17 00:00:00 2001 From: Sam Ockman Date: Thu, 23 Aug 2012 15:57:37 -0400 Subject: Version with official config support --- wqflask/cfg/__init__.py | 0 wqflask/cfg/default_settings.py | 1 + wqflask/wqflask/__init__.py | 4 ++++ wqflask/wqflask/search_results.py | 2 +- 4 files changed, 6 insertions(+), 1 deletion(-) create mode 100644 wqflask/cfg/__init__.py create mode 100644 wqflask/cfg/default_settings.py diff --git a/wqflask/cfg/__init__.py b/wqflask/cfg/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/wqflask/cfg/default_settings.py b/wqflask/cfg/default_settings.py new file mode 100644 index 00000000..30ad51d1 --- /dev/null +++ b/wqflask/cfg/default_settings.py @@ -0,0 +1 @@ +LOGFILE = """/tmp/flask_gn_log""" diff --git a/wqflask/wqflask/__init__.py b/wqflask/wqflask/__init__.py index a6119dcc..a7492e77 100644 --- a/wqflask/wqflask/__init__.py +++ b/wqflask/wqflask/__init__.py @@ -9,6 +9,10 @@ from utility import formatting app = Flask(__name__) +# See http://flask.pocoo.org/docs/config/#configuring-from-files +app.config.from_object('cfg.default_settings') +app.config.from_envvar('WQFLASK_SETTINGS') + app.jinja_env.globals.update( numify = formatting.numify ) diff --git a/wqflask/wqflask/search_results.py b/wqflask/wqflask/search_results.py index ce7a6eef..d393d0c1 100644 --- a/wqflask/wqflask/search_results.py +++ b/wqflask/wqflask/search_results.py @@ -36,7 +36,7 @@ from utility import webqtlUtil from dbFunction import webqtlDatabaseFunction import logging -logging.basicConfig(filename="/tmp/flask_gn_log", level=logging.INFO) +logging.basicConfig(filename=app.config['LOGFILE'], level=logging.INFO) _log = logging.getLogger("search") _ch = logging.StreamHandler() -- cgit v1.2.3

+ +

Latest Updates and News from Genenetwork modify this page

+ + + This is where we will keep what's new + +

+ +