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| author | zsloan | 2021-09-05 17:03:51 +0000 |
|---|---|---|
| committer | zsloan | 2021-09-05 17:03:51 +0000 |
| commit | f81a5629ab6ea7e39893af00e59c3ac6d79d7892 (patch) | |
| tree | 9ca03353255d56bdf9f6867362abe1565cbd89a7 | |
| parent | f4297bc9e4c49f58e0759d02d3e7aea392ba5615 (diff) | |
| download | genenetwork2-f81a5629ab6ea7e39893af00e59c3ac6d79d7892.tar.gz | |
Fixed issue that caused sample data to not be fetched correctly; there's something wrong with the 'get_probeset_data' function (not sure why this function exists)
| -rw-r--r-- | wqflask/wqflask/correlation/correlation_gn3_api.py | 5 |
1 files changed, 1 insertions, 4 deletions
diff --git a/wqflask/wqflask/correlation/correlation_gn3_api.py b/wqflask/wqflask/correlation/correlation_gn3_api.py index d0d4bcba..a18bceaf 100644 --- a/wqflask/wqflask/correlation/correlation_gn3_api.py +++ b/wqflask/wqflask/correlation/correlation_gn3_api.py @@ -150,10 +150,7 @@ def fetch_sample_data(start_vars, this_trait, this_dataset, target_dataset): sample_data = process_samples( start_vars, this_dataset.group.all_samples_ordered()) - if target_dataset.type == "ProbeSet": - target_dataset.get_probeset_data(list(sample_data.keys())) - else: - target_dataset.get_trait_data(list(sample_data.keys())) + target_dataset.get_trait_data(list(sample_data.keys())) this_trait = retrieve_sample_data(this_trait, this_dataset) this_trait_data = { "trait_sample_data": sample_data, |