From f81a5629ab6ea7e39893af00e59c3ac6d79d7892 Mon Sep 17 00:00:00 2001 From: zsloan Date: Sun, 5 Sep 2021 17:03:51 +0000 Subject: Fixed issue that caused sample data to not be fetched correctly; there's something wrong with the 'get_probeset_data' function (not sure why this function exists) --- wqflask/wqflask/correlation/correlation_gn3_api.py | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/wqflask/wqflask/correlation/correlation_gn3_api.py b/wqflask/wqflask/correlation/correlation_gn3_api.py index d0d4bcba..a18bceaf 100644 --- a/wqflask/wqflask/correlation/correlation_gn3_api.py +++ b/wqflask/wqflask/correlation/correlation_gn3_api.py @@ -150,10 +150,7 @@ def fetch_sample_data(start_vars, this_trait, this_dataset, target_dataset): sample_data = process_samples( start_vars, this_dataset.group.all_samples_ordered()) - if target_dataset.type == "ProbeSet": - target_dataset.get_probeset_data(list(sample_data.keys())) - else: - target_dataset.get_trait_data(list(sample_data.keys())) + target_dataset.get_trait_data(list(sample_data.keys())) this_trait = retrieve_sample_data(this_trait, this_dataset) this_trait_data = { "trait_sample_data": sample_data, -- cgit v1.2.3