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| author | zsloan | 2020-11-25 13:16:26 -0600 |
|---|---|---|
| committer | zsloan | 2020-11-25 13:16:26 -0600 |
| commit | a1563aee47a54d5ff4253e1da7e851afe28805c0 (patch) | |
| tree | 410167bbda2ea7a31b11fde8baab85068c7fa6fb | |
| parent | ab6681e545bd4c84e1f74107b90ea52f7d2ca24c (diff) | |
| download | genenetwork2-a1563aee47a54d5ff4253e1da7e851afe28805c0.tar.gz | |
Added code for passing around form parameters related to manhattan plot coloration to run_mapping.py and views.py
| -rw-r--r-- | wqflask/wqflask/marker_regression/run_mapping.py | 7 | ||||
| -rw-r--r-- | wqflask/wqflask/views.py | 2 |
2 files changed, 8 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/run_mapping.py b/wqflask/wqflask/marker_regression/run_mapping.py index 31d6a67c..c474e0e0 100644 --- a/wqflask/wqflask/marker_regression/run_mapping.py +++ b/wqflask/wqflask/marker_regression/run_mapping.py @@ -138,7 +138,12 @@ class RunMapping(object): mapping_results_filename = self.dataset.group.name + "_" + ''.join(random.choice(string.ascii_uppercase + string.digits) for _ in range(6)) self.mapping_results_path = "{}{}.csv".format(webqtlConfig.GENERATED_IMAGE_DIR, mapping_results_filename) - if start_vars['manhattan_plot'] == "true": + if start_vars['manhattan_plot']: + self.color_scheme = "alternating" + if "color_scheme" in start_vars: + self.color_scheme = start_vars['color_scheme'] + if self.color_scheme == "single": + self.manhattan_single_color = start_vars['manhattan_single_color'] self.manhattan_plot = True else: self.manhattan_plot = False diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py index b7c4d142..7118bab7 100644 --- a/wqflask/wqflask/views.py +++ b/wqflask/wqflask/views.py @@ -718,6 +718,8 @@ def mapping_results_page(): 'maf', 'use_loco', 'manhattan_plot', + 'color_scheme', + 'manhattan_single_color', 'control_marker', 'control_marker_db', 'do_control', |