From a1563aee47a54d5ff4253e1da7e851afe28805c0 Mon Sep 17 00:00:00 2001
From: zsloan
Date: Wed, 25 Nov 2020 13:16:26 -0600
Subject: Added code for passing around form parameters related to manhattan
 plot coloration to run_mapping.py and views.py

---
 wqflask/wqflask/marker_regression/run_mapping.py | 7 ++++++-
 wqflask/wqflask/views.py                         | 2 ++
 2 files changed, 8 insertions(+), 1 deletion(-)

diff --git a/wqflask/wqflask/marker_regression/run_mapping.py b/wqflask/wqflask/marker_regression/run_mapping.py
index 31d6a67c..c474e0e0 100644
--- a/wqflask/wqflask/marker_regression/run_mapping.py
+++ b/wqflask/wqflask/marker_regression/run_mapping.py
@@ -138,7 +138,12 @@ class RunMapping(object):
             mapping_results_filename = self.dataset.group.name + "_" + ''.join(random.choice(string.ascii_uppercase + string.digits) for _ in range(6))
             self.mapping_results_path = "{}{}.csv".format(webqtlConfig.GENERATED_IMAGE_DIR, mapping_results_filename)
 
-        if start_vars['manhattan_plot'] == "true":
+        if start_vars['manhattan_plot']:
+            self.color_scheme = "alternating"
+            if "color_scheme" in start_vars:
+                self.color_scheme = start_vars['color_scheme']
+                if self.color_scheme == "single":
+                    self.manhattan_single_color = start_vars['manhattan_single_color']
             self.manhattan_plot = True
         else:
             self.manhattan_plot = False
diff --git a/wqflask/wqflask/views.py b/wqflask/wqflask/views.py
index b7c4d142..7118bab7 100644
--- a/wqflask/wqflask/views.py
+++ b/wqflask/wqflask/views.py
@@ -718,6 +718,8 @@ def mapping_results_page():
         'maf',
         'use_loco',
         'manhattan_plot',
+        'color_scheme',
+        'manhattan_single_color',
         'control_marker',
         'control_marker_db',
         'do_control',
-- 
cgit 1.4.1