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authorzsloan2022-07-12 19:06:07 +0000
committerzsloan2022-07-12 19:06:07 +0000
commit1e403623792daca83875b5fefd5193455facb88e (patch)
tree1c86c4681812a3be52f1021a1ad4d61c35f1b43e
parent81f5855a2e7b671bff41ee4b05cbdaeba5ea2792 (diff)
downloadgenenetwork2-1e403623792daca83875b5fefd5193455facb88e.tar.gz
Include genotypes for F1s/reference/non-reference strains when fetching
sample data for genotype traits
-rw-r--r--wqflask/base/data_set.py8
1 files changed, 8 insertions, 0 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index a7811a30..211c6752 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -1022,6 +1022,14 @@ class GenotypeDataSet(DataSet):
results = g.db.execute(query,
(webqtlDatabaseFunction.retrieve_species_id(self.group.name),
trait, self.name)).fetchall()
+
+ if self.group.name in webqtlUtil.ParInfo:
+ f1_1, f1_2, ref, nonref = webqtlUtil.ParInfo[self.group.name]
+ results.append([f1_1, 0, None, "N/A", f1_1])
+ results.append([f1_2, 0, None, "N/A", f1_2])
+ results.append([ref, -1, None, "N/A", ref])
+ results.append([nonref, 1, None, "N/A", nonref])
+
return results