From 1e403623792daca83875b5fefd5193455facb88e Mon Sep 17 00:00:00 2001
From: zsloan
Date: Tue, 12 Jul 2022 19:06:07 +0000
Subject: Include genotypes for F1s/reference/non-reference strains when
 fetching sample data for genotype traits

---
 wqflask/base/data_set.py | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index a7811a30..211c6752 100644
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -1022,6 +1022,14 @@ class GenotypeDataSet(DataSet):
         results = g.db.execute(query,
                                (webqtlDatabaseFunction.retrieve_species_id(self.group.name),
                                 trait, self.name)).fetchall()
+
+        if self.group.name in webqtlUtil.ParInfo:
+            f1_1, f1_2, ref, nonref = webqtlUtil.ParInfo[self.group.name]
+            results.append([f1_1, 0, None, "N/A", f1_1])
+            results.append([f1_2, 0, None, "N/A", f1_2])
+            results.append([ref, -1, None, "N/A", ref])
+            results.append([nonref, 1, None, "N/A", nonref])
+
         return results
 
 
-- 
cgit v1.2.3