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| author | Pjotr Prins | 2015-03-12 17:18:38 +0300 |
|---|---|---|
| committer | Pjotr Prins | 2015-03-12 17:18:38 +0300 |
| commit | 494edec995a38279eb1da21d520b2cb249eb1079 (patch) | |
| tree | 504343a5af7e3a905f3aad49d88461a53793ead9 | |
| parent | bd8e4f30cd1eb0a41399d8d94b516845da3c32a0 (diff) | |
| download | genenetwork2-494edec995a38279eb1da21d520b2cb249eb1079.tar.gz | |
weird fix for lmm result - Python weirdness
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/runlmm.py | 6 |
1 files changed, 6 insertions, 0 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py index 0b727383..e64ca0e6 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py @@ -102,6 +102,12 @@ def normalizeGenotype(G): G = (G - m) / s # Normalize the deviation return G +gn = [] +for snp in g: + gn.append( normalizeGenotype(snp) ) + +gn = g + print("Before",g) gT = g.T |