From 494edec995a38279eb1da21d520b2cb249eb1079 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Thu, 12 Mar 2015 17:18:38 +0300
Subject: weird fix for lmm result - Python weirdness

---
 wqflask/wqflask/my_pylmm/pyLMM/runlmm.py | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py
index 0b727383..e64ca0e6 100644
--- a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py
+++ b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py
@@ -102,6 +102,12 @@ def normalizeGenotype(G):
         G = (G - m) / s     # Normalize the deviation
     return G
 
+gn = []
+for snp in g:
+    gn.append( normalizeGenotype(snp) )
+
+gn = g
+
 print("Before",g)
 
 gT = g.T
-- 
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