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authorBonfaceKilz2020-09-26 00:46:08 +0300
committerBonfaceKilz2020-09-26 00:46:08 +0300
commit09138b54e82225043aa5fde83b74233bcac589b0 (patch)
tree80dba8d8f11871b0302f25a53acf005189187ab3 /.github/workflows/main.yml
parentd52cc25d120173de3fd16bbd42ea38498d458e35 (diff)
parent3ec4eb6b831eaa5adcf32a9fca8a60ea229cc1c4 (diff)
downloadgenenetwork2-09138b54e82225043aa5fde83b74233bcac589b0.tar.gz
Merge branch 'testing' into build/python3-migration
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+name: tests
+
+# Run actions when pushing to the testing branch or when you create a
+# PR against it
+on:
+ push:
+ branches: [ testing ]
+ pull_request:
+ branches: [ testing ]
+
+jobs:
+ unittest:
+ runs-on: ubuntu-latest
+ container: bonfacekilz/python2-genenetwork2:latest
+
+ steps:
+ # First start with mariadb set then checkout. The checkout gives
+ # the mysqld enough time to start
+ - name: Set up mariadb
+ run: |
+ mysql_install_db --user=mysql --datadir=/usr/local/mysql
+ # Wait for the mysqld_safe process to start
+ mysqld_safe --user=mysql --datadir=/usr/local/mysql &
+
+ # Use v1 of checkout since v2 fails
+ - name: Checkout Project
+ uses: actions/checkout@v1
+
+ # Redis is required by some of the tests 6379
+ - name: Start Redis
+ run: |
+ /gn2-profile/bin/screen -dmLS redisconn /gn2-profile/bin/redis-server
+
+ # Redis is required by some of the tests 6379
+ - name: Bootstrap tables
+ run: |
+ mysql -u root -e "SHOW DATABASES;"
+ mysql -u root -e "CREATE DATABASE db_webqtl_s;"
+ mysql -u root -e "CREATE USER 'gn2'@'localhost' IDENTIFIED BY 'mysql_password';"
+ mysql -u root -e "GRANT ALL PRIVILEGES ON *.* TO 'gn2'@'localhost';FLUSH PRIVILEGES;"
+
+ - name: Run the unit tests
+ run: |
+ env GN2_PROFILE=/gn2-profile \
+ TMPDIR=/tmp SERVER_PORT=5004 \
+ WEBSERVER_MODE=DEBUG LOG_LEVEL=DEBUG \
+ GENENETWORK_FILES=/genotype_files/ bin/genenetwork2 \
+ etc/default_settings.py -c -m unittest discover -v