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- <p>GeneCup is a tool to efficiently and comprehensively answer the question <b>"What do we know about these genes and the topic I study?".
+ <p>GeneCup is a tool to answer the question <b>"What do we know about these genes and the topic I study?".
</b> GeneCup answers this question by searching PubMed to find <i>sentences</i> containing gene symbols and a custom list of keywords.
- These keywords are organized into a user defined ontology, which groups related keywords together for better organization of the results.
+ <!-- These keywords are organized into a user defined ontology, which groups related keywords together for better organization of the results. -->
Human GWAS findings from <a href="https://www.ebi.ac.uk/gwas/">NHGRI-EBI GWAS catalog </a>are also included in the search.
- These gene-keyword relationships are presented as an interactive graph and a table.
+ These gene-keyword relationships are presented as a graph or a table.
<!--Gene alias often include non-specific words and are thus not included in the initial search.
However, a list of alias can be found by clicking on the gene symbol in the results section.
These alias then can be searched with a single click. -->
- As an example, we present a curated ontology for drug addiction with over <a href="/ontology"> 300 keywords organized into seven categories.</a>
- Furthermore, <b>deep learning </b> is used to distinguish automatically the sentences describing systemic stress from those describing cellular stress.
- A user account (free) is needed to create custom ontologies and save the search results.
+ Here we present a curated ontology for drug addiction with over <a href="/ontology"> 300 keywords organized into seven categories.</a>
+ <b>Deep learning </b> is used to distinguish, for example, the sentences describing systemic stress from those describing cellular stress.
+ A user account (free) is needed to create custom ontologies and save the search results. We do not track you.
</p>
<p>Example: </b><a href=/progress?type=GWAS&type=addiction&type=drug&type=brain&type=stress&type=psychiatric&type=cell&type=function&query=Rgma+Penk>Rgma Penk</a>.</p>
{%if ("name" not in session) %}
By default, the <a href="/ontology">addiction</a> ontology is used. Custom ontologies can be created in user accounts.
- Please choose keyword categories to be included in the search.
<form action="/progress">
<div id="check_selection"></div>