diff options
Diffstat (limited to 'server.py')
| -rwxr-xr-x | server.py | 15 |
1 files changed, 10 insertions, 5 deletions
diff --git a/server.py b/server.py index 519eedf..33f3bb0 100755 --- a/server.py +++ b/server.py @@ -146,7 +146,6 @@ def login(): else: flash("Invalid username or password!", "inval") return render_template('signup.html') - print(onto_list) return render_template('index.html',onto_len_dir=onto_len_dir, onto_list=onto_list, ontol = 'addiction', dict_onto = dict_onto) @@ -570,7 +569,11 @@ def ontoarchive(): if ('email' in session): if os.path.exists(datadir+"/user/"+str(session['hashed_email'])+"/ontology") == False: flash("Ontology history doesn't exist!") - return render_template('index.html',onto_len_dir=session['onto_len_dir'], onto_list=session['onto_list']) + onto_len_dir = 0 + onto_list = '' + onto_cont=open("addiction.onto","r").read() + dict_onto=ast.literal_eval(onto_cont) + return render_template('index.html',onto_len_dir=onto_len_dir, onto_list=onto_list, ontol = 'addiction', dict_onto = dict_onto) else: session['user_folder'] = datadir+"/user/"+str(session['hashed_email']) else: @@ -762,7 +765,7 @@ def search(): if(len(genes)==1): percent_ratio=2 timeextension=session['timeextension'] - percent=round(100/percent_ratio,1)-1 # 7 categories + 1 at the beginning + percent=100/percent_ratio-0.00000001 # 7 categories + 1 at the beginning if ('email' in session): sessionpath = session['path_user'] + timeextension @@ -852,6 +855,7 @@ def search(): yield "data:"+str(progress)+"\n\n" for gene in genes: abstracts_raw = getabstracts(gene,all_d) + #print(abstracts_raw) sentences_ls=[] for row in abstracts_raw.split("\n"): @@ -891,10 +895,11 @@ def search(): dict_onto=ast.literal_eval(onto_cont) #ky_d=undic(list(dict_onto[ky].values())) sent=gene_category(gene,ky,str(ky), sentences_ls, addiction_flag,dict_onto) - else: #ky_d=undic(list(dict_onto[ky].values())) + #print(sentences_ls) sent=gene_category(gene,ky,str(ky), sentences_ls, addiction_flag,dict_onto) + #print(sent) yield "data:"+str(progress)+"\n\n" geneEdges += generate_edges(sent, tf_name) @@ -918,7 +923,7 @@ def search(): +str(row['MAPPED_TRAIT'])+"</b><br>" gwas_sent.append(gene+"\t"+"GWAS"+"\t"+nd+"_GWAS\t"+str(row['PUBMEDID'])+"\t"+gwas_text) cys, gwas_json, sn_file = searchArchived('GWAS', gene , 'json',gwas_sent, path_user) - with open(path_user+"gwas_results.tab", "w") as gwas_edges: + with open(path_user+"gwas_results.tab", "a") as gwas_edges: gwas_edges.write(sn_file) geneEdges += cys json_edges += gwas_json |