diff options
| -rwxr-xr-x | server.py | 15 |
1 files changed, 9 insertions, 6 deletions
@@ -539,19 +539,22 @@ def sentences(): edge=request.args.get('edgeID') (tf_name, gene0, cat0)=edge.split("|") out3="" + num_abstract = 0 with open(tf_name, "r") as df: all_sents=df.read() for sent in all_sents.split("\n"): if len(sent.strip())!=0: - (gene,nouse,cat, pmid, text)=sent.split("\t") - if (gene.upper() == gene0.upper() and cat.upper() == cat0.upper() and (pmid+cat0 not in pmid_list)) : - out3+= "<li> "+ text + " <a href=\"https://www.ncbi.nlm.nih.gov/pubmed/?term=" + pmid +"\" target=_new>PMID:"+pmid+"<br></a>" - pmid_list.append(pmid+cat0) + (gene,nouse,cat, pmid, text)=sent.split("\t") + if (gene.upper() == gene0.upper() and cat.upper() == cat0.upper()) : + out3+= "<li> "+ text + " <a href=\"https://www.ncbi.nlm.nih.gov/pubmed/?term=" + pmid +"\" target=_new>PMID:"+pmid+"<br></a>" + num_abstract += 1 + if(pmid+cat0 not in pmid_list): + pmid_list.append(pmid+cat0) out1="<h3>"+gene0 + " and " + cat0 + "</h3>\n" if len(pmid_list)>1: - out2 = str(len(pmid_list)) + ' sentences in ' + str(len(pmid_list)) + ' studies' "<hr>\n" + out2 = str(num_abstract) + ' sentences in ' + str(len(pmid_list)) + ' studies' "<hr>\n" else: - out2 = str(len(pmid_list)) + ' sentence in ' + str(len(pmid_list)) + ' study' "<hr>\n" + out2 = str(num_abstract) + ' sentence in ' + str(len(pmid_list)) + ' study' "<hr>\n" out= out1+ out2 +out3 return render_template('sentences.html', sentences="<ol>"+out+"</ol><p>") |