1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
|
function [] = writeParameters_ev(pre,bnet,nnodes,labels,cases,stdevs,means,selectvar,selectdata)
%Writes a file that contains the parameters of the network after entering evidence.
%
% The file is called ???parameters_ev.txt where ??? is the prefix in BNW
% for the network.
%
% It is called by Predictmultiple.m
%Read in original node labels to get node IDs.
infile = strcat(pre,'continuous_input.txt');
fin = fopen(infile,'r');
labelsold = cell(1,nnodes);
buffer = fgetl(fin);
for j = 1:nnodes
[next,buffer] = strtok(buffer);
labelsold{j} = next;
end
fclose(fin);
evidence = cell(1,nnodes);
engine = jtree_inf_engine(bnet);
m = size(selectvar,1);
%%Get the types of the nodes.
typefile = strcat(pre,'type.txt');
ftype = fopen(typefile,'r');
types = cell(1,nnodes);
buffer = fgetl(ftype);
buffer = fgetl(ftype);
for j = 1:nnodes
[next,buffer] = strtok(buffer);
types{j} = uint16(str2num(next));
end
max_states = 0;
disc_nodes = 0;
for j = 1:nnodes
if types{j} > max_states
max_states = types{j};
end
if types{j} > 1
disc_nodes = disc_nodes + 1;
end
end
%Add 1 to max_states to account for node name
max_states = max_states + 1;
%%Get mapping of discrete levels.
levelfile = strcat(pre,'nlevels.txt');
flevels = fopen(levelfile,'r');
levels = cell(disc_nodes,max_states);
ndisc_nodes = 0;
for i=1:disc_nodes
ndisc_nodes = ndisc_nodes + 1;
buffer = fgetl(flevels);
for j = 1:max_states
[next,buffer] = strtok(buffer);
if j == 1
levels{i,j} = next;
else
% levels{i,j} = uint16(str2num(next));
levels{i,j} = next;
end
if length(buffer) < 1
break
end
end
end
ev_dat = zeros(1,nnodes);
for i = 1:m,
di=selectvar(i,1);
ev_dat(di)=selectdata(i,1);
%Need to standardize evidence for continuous nodes.
if bnet.node_sizes(di) == 1,
ev_dat(di) = (ev_dat(di) - means{di})/stdevs{di};
end
evidence{di} = ev_dat(di);
end
[engine,loglik]=enter_evidence(engine,evidence);
%Open output file.
filename = strcat(pre,'parameters_ev.txt');
fileID = fopen(filename,'w');
for i = 1:nnodes
for j = 1:nnodes
if strcmp(labelsold{i},labels{j});
nodeid = j;
break
end
end
%%%Print the name of the node
fprintf(fileID,'%s\n',labels{nodeid});
predict = marginal_nodes(engine,nodeid);
if isempty(evidence{nodeid})
%%%Print the type of node
if bnet.node_sizes(nodeid) == 1;
line = 'Continuous parameters considering evidence:\n';
fprintf(fileID,line);
%line = 'Mean and standard deviation of Gaussian distribution\n';
%fprintf(fileID,line);
adj_mu = predict.mu*stdevs{nodeid}+means{nodeid};
adj_sigma = stdevs{nodeid}*predict.Sigma;
fprintf(fileID,'%6.4f\t%6.4f\n\n',adj_mu,adj_sigma);
else
line = 'Probability of states considering evidence:\n';
fprintf(fileID,line);
nodeid2 = 0;
for k = 1:ndisc_nodes,
if strcmp(levels{k,1},labels{nodeid}),
nodeid2 = k;
break
end
end
for j = 1:bnet.node_sizes(nodeid),
%%%For discrete nodes, the state and the percent of that state
% fprintf(fileID,'%i\t%6.4f\n',levels{nodeid2,j+1},predict.T(j));
fprintf(fileID,'%s\t%6.4f\n',levels{nodeid2,j+1},predict.T(j));
end;
fprintf(fileID,'\n')
end
else
if bnet.node_sizes(nodeid) == 1;
line = 'Evidence was observed for this node. The observed value was:\n';
fprintf(fileID,line);
adj_mu = ev_dat(nodeid)*stdevs{nodeid}+means{nodeid};
fprintf(fileID,'%6.4f\n\n',adj_mu);
else
nodeid2 = 0;
for k = 1:ndisc_nodes,
if strcmp(levels{k,1},labels{nodeid}),
nodeid2 = k;
break
end
end
line = 'Evidence was observed for this node. The observed state was:\n';
fprintf(fileID,line);
state_ev = uint16(ev_dat(nodeid));
% fprintf(fileID,'%i\n\n',levels{nodeid2,state_ev+1});
fprintf(fileID,'%s\n\n',levels{nodeid2,state_ev+1});
end
end
end
fclose(fileID);
end
|