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<?php
//Going to modify this so it just writes the uploaded data to a file.
//Standardization and determining other factors will be performed in
// a Matlab/Octave script.
include("header_new.inc");
include("header_batchsearch.inc");
include("input_validate.php");
$searchID="";
$UploadValue="NO";
$TextFile=$_FILES["MyFile"]["name"];
if($_GET["My_key"]!="")
$keyval=$_GET["My_key"];
if($_POST["My_key"]!="")
$keyval=$_POST["My_key"];
$keyval=valid_keyval($keyval);
$sid="structure_input";
//$dir="./data/";
//$dir="/tmp/bnw/".$keyval;
$dir="/var/lib/genenet/bnw/";
$TextinFile=$dir.$keyval.$sid.".txt";
//$TextinFileFinal=$dir.$sid.".txt";
//$TextinFile=$dir.$sid."_temp.txt";
if(isset($_POST["searchkey"]))
{
$searchID=$_POST["searchkey"];
}
if($searchID=="")
{
?>
<!-- Site navigation menu -->
<ul class="navbar2">
<li><a href="help.php#file_format" target="_blank">Data formatting guidelines</a>
<li><a href="help.php" target="_blank">Help</a>
<li><a href="home.php">Home</a>
</ul>
<?php
}
if(isset($_POST["MyUpload"]))
{
$UploadValue=$_POST["MyUpload"];
if ($UploadValue=="YES")
{
if($TextFile!="")
{
$sta=move_uploaded_file($_FILES['MyFile']['tmp_name'],$TextinFile);
if(!$sta)
{
echo "<script type='text/javascript'> window.alert ('Sorry, error uploading $TextFile.')</script>";
flush();
exit();
}
else
{
$searchID=file_get_contents("$TextinFile");
//unlink($TextinFile);
}
}
else
{
echo "<script type='text/javascript'> window.alert ('Sorry, please select upload file.')</script>";
}
}
}
?>
<div id="outernew">
<h2><font>Upload structure file</font></h2>
<FORM name="key_search" id="in_form" enctype="multipart/form-data" ACTION="net_structure.php" METHOD=POST>
<INPUT style="background-color:#FFFFFF;" type="file" name="MyFile" id="MyFile_id" class="inputfile" onchange="upload_submit()" >
<label for="MyFile_id">Choose a file. . .</label>
<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
<INPUT TYPE="hidden" name="MyUpload" value="NO">
<textarea name="searchkey" style="display:none;"><?PHP print($searchID)?> </textarea>
<br><br>
<INPUT TYPE="submit" class=button2 value=" Load example structure " onclick="return demo_str();">   
<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
</FORM>
</div>
<script>
function upload_submit() {
Upload();
document.getElementById("in_form").submit();
}
</script>
<?php
if($searchID!="")
{
if ($UploadValue=="NO")
{
$str_arr=array();
$searchID=trim($searchID);
$str_arr=explode("\n",$searchID);
$data=array();
$fpmain = fopen($TextinFile,"w");
foreach($str_arr as $line)
{
$line=trim($line);
fwrite($fpmain, "$line\n");
}
}
?>
<ul class="navbar2">
<li><a href="help.php#file_format" target="_blank">Data formatting guidelines</a>
<li><a href="help.php" target="_blank">Help</a>
<li><a href="home.php">Home</a>
</ul>
<div id="outernew_load">
<br>
<a class=button3 href="graphviz_structure.php?My_key=<?php print($keyval);?>">Display uploaded network</a>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
<?php
}
?>
</body>
</html>
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