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<!DOCTYPE html>
<head>
<link rel="stylesheet" href="./scripts/cytoscape.js-panzoom.css">
<link rel="stylesheet" href="./scripts/font-awesome.css">
<?php
include("header_new.inc");
include("input_validate.php");
$keyval=valid_keyval($_GET["My_key"]);
//$dir="./data/";
//In this case, $dir is used by the json command so it is interpreted and turned into /tmp/bnw/ automatically
//$dir="/tmp/bnw/";
$dir="/var/lib/genenet/bnw/";
$input_json=$keyval."network.json";
$output_png=$keyval."modified_network.png";
//In this section, $dir is used by php, so we need to use /tmp/bnw
//$thrfile="/tmp/bnw/".$keyval."thr.txt";
$thrfile="/var/lib/genenet/bnw/".$keyval."thr.txt";
if(file_exists($thrfile))
{
$thr=file_get_contents("$thrfile");
$thr=trim($thr);
} else {
$thr=0.5;
}
?>
<script src="./scripts/jquery.min.js"></script>
<script src="./scripts/cytoscape.min.js"></script>
<script src="./scripts/dagre.js"></script>
<script src="./scripts/cytoscape-dagre.min.js"></script>
<script src="./scripts/cytoscape-panzoom.js"></script>
<script src="./scripts/lodash.js"></script>
<style type = "text/css">
#cy {
width: 80%;
height: 80%;
position: absolute;
/*float: top;*/
top: 3em;
left: 9em;
overflow: auto;
border: 2px solid;
border-radius: 0.5em;
}
#loading {
position: absolute;
display: block;
top: 10%;
width: 45%;
color: #000;
font-size: 8em;
text-align: center;
}
#loading.loaded {
display: none;
}
#filterOut {
color: black;
}
</style>
<?php
$json_text = json_encode(file("file://".$dir.$input_json));
?>
<script>
// var default_layout = { name: 'breadthfirst',
// directed: true,
// maximal: true,
// grid: true,
// spacingFactor: 1,
// fit: true, //whether to fit the viewport to the graph
// padding: 10 // the padding on fit
//}
var default_layout = { name: 'dagre',
fit: true,
padding: 30,
spacingFactor: 1.25
}
//$.getJSON("<?php print($input_json);?>",function (data) {
$.getJSON("./data/sample_network.json",function (dumm) {
// console.log(data);
// document.addEventListener('DOMContentLoaded', function(){
var data1 = <?php echo $json_text?>;
// console.log(data1);
var data2 = data1.join("");
var data = JSON.parse(data2);
var cy = window.cy = cytoscape({
container: document.getElementById('cy'),
elements: data,
layout: default_layout,
style: [
{
selector: 'node',
style: {
'label': 'data(label)',
'font-size': 20,
'shape': 'roundrectangle',
'text-halign': 'center',
'text-valign': 'center',
'width': 'label',
'height': 'label',
'padding': '6px',
'color': 'black',
'background-color': 'white',
'border-style': 'solid',
'border-color': 'black',
'border-width': '2px'
}
},
{
selector: '.selected1',
style:{
'color': 'green',
'shape': 'ellipse',
'background-color': '#DCDCDC',
'border-color': 'green',
'border-width': '2px',
'border-style': 'dashed'
}
},
{
selector: '.selected2',
style:{
'color': 'red',
'shape': 'octagon',
'border-color': 'red',
'border-width': '2px',
'background-color': '#DCDCDC',
'border-style': 'dashed'
}
},
{
selector: 'edge',
style: {
'line-color': 'black',
'curve-style': 'bezier',
//'target-endpoint': 'outside-to-node-or-label',
'width': '3px',
'target-arrow-shape': 'triangle',
'target-arrow-color': 'black',
'control-point-step-size': '140px',
'arrow-scale': '2'
}
},
{
selector: '.selected3',
style:{
'line-color': 'red',
'target-arrow-color': 'red',
'line-style': 'dashed'
}
}
]
});
// });
//window.onload=function() {
var eles = cy.filter(); //var containing all elements so they can be restored after being removed
// the default values of each option are outlined below:
var defaults = {
zoomFactor: 0.05, // zoom factor per zoom tick
zoomDelay: 45, // how many ms between zoom ticks
minZoom: 0.1, // min zoom level
maxZoom: 10, // max zoom level
fitPadding: 30, // padding when fitting
panSpeed: 10, // how many ms in between pan ticks
panDistance: 10, // max pan distance per tick
panDragAreaSize: 75, // the length of the pan drag box in which the vector for panning is calculated (bigger = finer control of pan speed and direction)
panMinPercentSpeed: 0.25, // the slowest speed we can pan by (as a percent of panSpeed)
panInactiveArea: 8, // radius of inactive area in pan drag box
panIndicatorMinOpacity: 0.5, // min opacity of pan indicator (the draggable nib); scales from this to 1.0
zoomOnly: false, // a minimal version of the ui only with zooming (useful on systems with bad mousewheel resolution)
fitSelector: undefined, // selector of elements to fit
animateOnFit: function(){ // whether to animate on fit
return false;
},
fitAnimationDuration: 1000, // duration of animation on fit
// icon class names
sliderHandleIcon: 'fa fa-minus',
zoomInIcon: 'fa fa-plus',
zoomOutIcon: 'fa fa-minus',
resetIcon: 'fa fa-expand',
};
cy.panzoom( defaults );
$("#loading").addClass("loaded");
//This is probably more complex than it needs to be;
// the goal is to ensure:
// 1) No more than two nodes can be selected at a time.
// 2) Only one parent node (selected1) and only one child node (selected2)
// can be selected
cy.on('tap', 'node', function(event) {
if(cy.filter("node.selected1").length == 0) {
event.target.addClass('selected1');
event.target.removeClass('selected2');
} else {
event.target.removeClass('selected1');
if(cy.filter("node.selected1").length == 1) {
if(cy.filter("node.selected2").length == 0) {
event.target.addClass('selected2');
} else {
event.cy.filter("node.selected2").removeClass("selected2");
}
} else {
event.cy.filter("node.selected1").removeClass("selected1");
event.cy.filter("node.selected2").removeClass("selected2");
}
}
});
//The code below works with older versions of Cytoscape.js (before v3)
//cy.on('tap', 'node', function(event) {
// if(cy.filter("node.selected1").length == 0) {
// event.cyTarget.addClass('selected1');
// event.cyTarget.removeClass('selected2');
// } else {
// event.cyTarget.removeClass('selected1');
// if(cy.filter("node.selected1").length == 1) {
// if(cy.filter("node.selected2").length == 0) {
// event.cyTarget.addClass('selected2');
// } else {
// event.cy.filter("node.selected2").removeClass("selected2");
// }
// } else {
// event.cy.filter("node.selected1").removeClass("selected1");
// event.cy.filter("node.selected2").removeClass("selected2");
// }
// }
// });
$("#addEdge").click(function (e) {
if(cy.filter("node.selected1").length !=1)
return;
if(cy.filter("node.selected1").length !=1)
return;
var edge = new Object();
edge.group = 'edges';
edge.data = {source: cy.filter("node.selected1")[0].data('id'), target: cy.$("node.selected2")[0].data('id'), weight: 1.1};
cy.add(edge);
cy.filter("node.selected1").removeClass('selected1',false);
cy.filter("node.selected2").removeClass('selected2',false);
});
//cy.on('tap', 'edge', function(event) {
// event.cyTarget.toggleClass('selected3');
// });
cy.on('tap', 'edge', function(event) {
event.target.toggleClass('selected3');
});
$("#deleteEdge").click(function (e) {
var tEdges = cy.filter("edge.selected3");
for (var i = 0; i < tEdges.length; i++)
{
cy.remove(tEdges[i]);
}
eles = cy.filter();
});
//$("#saveNetwork").click(function (e) {
// console.log(cy.elements().jsons());
//});
$("#downloadNetwork").click(function (e) {
var png64 = cy.png();
$(this).attr('href',png64);
$(this).attr('download',"<?php print($output_png);?>");
});
$("#saveNetwork").click(function (e) {
//var jsonObject = JSON.stringify(cy.elements().jsons());
$("#loading").removeClass("loaded");
var node_labs = cy.nodes().map(function (ele) {
return ele.data('label');
});
var sources = cy.edges().map(function (ele) {
return ele.data('source');
});
var targets = cy.edges().map(function (ele) {
return ele.data('target');
});
var weights = cy.edges().map(function (ele) {
return ele.data('weight');
});
var old_key = "<?php print($keyval);?>";
$.post("modified_network.php", {
old_key : old_key,
nnodes : node_labs.length,
node_labs : JSON.stringify(node_labs),
nedges : sources.length,
sources : JSON.stringify(sources),
targets : JSON.stringify(targets),
weights : JSON.stringify(weights)
},
function( data ) {
window.location.href = data;
});
// $.post("modified_network.php", {
// str : old_key,
//json : jsonObject
// },
});
$('#pos_slide').change(function (e) {
eles.restore();
pos_slide_val = $('#pos_slide').val();
cy.$("edge[weight < " + pos_slide_val + "]").remove();
});
// };
});
</script>
</head>
<body>
<!-- Site navigation menu -->
<ul class="navbar">
<li><a id="addEdge" href="#">Add edge between selected nodes</a></li>
<li><a id="deleteEdge" href="#">Remove selected edges</a></li>
<?php
//$filename1="/tmp/bnw/".$keyval."structure_input_temp.txt";
$filename1="/var/lib/genenet/bnw/".$keyval."structure_input_temp.txt";
if(file_exists($filename1))
{?>
<li><a id="weightFilter" href="#">Filter edges by weight:</a>
<form name="weightValue">
<output name="filterOut" id="filterOut" style="color:black"><?php print($thr);?></output><br>
<input type="range" name="weightOutputName" id= "pos_slide" min="<?php print($thr);?>" max="1" value ="<?php print($thr);?>" step="0.01" list="weight" style="display: inline; width: 120px" oninput="filterOut.value = pos_slide.value">
</form>
</li>
<?php
}
?>
<li><a id="saveNetwork" href="#">Use modified network</a></li>
</ul>
<ul class="navbar2">
<li class="noHover"><p>Network ID:<br><?php print($keyval);?></p></li>
<li><a id="downloadNetwork" href="#">Save network as PNG</a></li>
</ul>
<ul class="navbar2">
<li><a href="add_remove_howto.htm" target='_blank'>About this page</a>
<li><a href="help.php" target='_blank'>Help</a>
<li><a href="../home.php">Home</a>
</ul>
<div id="cy"></div>
<div id="loading">
<span class="fa fa-refresh fa-spin"></spin>
</div>
</body>
</html>
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