1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
|
<?php
include("input_validate.php");
$keyval=valid_keyval($_GET["My_key"]);
//////////////execute c codes for local score///////////////////
//$dir="./data/";
//$dir="/tmp/bnw/";
$dir="/var/lib/genenet/bnw/";
$pfile=$dir.$keyval."parent.txt";
$parentf=file_get_contents("$pfile");
//$maxp=valid_input($parentf);
$maxp=trim($parentf);
$kfile=$dir.$keyval."k.txt";
$kf=file_get_contents("$kfile");
//$maxk=valid_input($kf);
$maxk=trim($kf);
$thrfile=$dir.$keyval."thr.txt";
$thr=file_get_contents("$thrfile");
//$thr=valid_input($thr);
$thr=trim($thr);
//$cmd="./run.sh $keyval $maxp $maxk";
//system($cmd);
shell_exec('./run.sh '.$keyval.' '.$maxp.' '.$maxk.' '.$thr);
/////////////////////////////////structure matrix//////////////////////////////////////////////////////////
$matfile=$dir.$keyval."structure_input.txt";
$fout=fopen($dir.$keyval."graphviz.txt","w");
$matrix1=file_get_contents("$matfile");
$str_arrmat=array();
$str_arrmat=explode("\n",$matrix1);
$datamat=array();
$data_cell=array();
$dataname=array();
$dataname=explode("\t",$str_arrmat[0]);
$n=count($dataname);
$initialstring="digraph G {\n"."size=\"6,8\"; ratio = fill;\n"."node [shape=square,width=1.5];\n";
$endstring="}";
fwrite($fout,"$initialstring");
$g_file_name=$dir.$keyval."grviz_name_file.txt";
$grviz_name_file=fopen($g_file_name,"w");
for($i=0;$i<$n;$i++)
{
$row_name=trim($dataname[$i]);
fwrite($grviz_name_file,"$row_name\n");
}
for($i=1;$i<=$n;$i++)
{
$ii=$i-1;
$row_name=trim($dataname[$ii]);
$col_arr=explode("\t",$str_arrmat[$i]);
for($j=0;$j<$n;$j++)
{
$col_val=trim($col_arr[$j]);
if($col_val==1)
{
$col_name=trim($dataname[$j]);
fprintf($fout,"%s -> %s;\n",$ii,$j);
//fprintf($fouttemp,"%s -> %s;\n",$row_name,$col_name);
}
}
}
fwrite($fout,"$endstring");
fclose($fout);
shell_exec('./run_scripts/run_octave '.$keyval);
?>
<script>
window.open("layout_svg_no.php?My_key=<?php print($keyval);?>",'_self',false);
</script>
|