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<?php
//Going to modify this so it just writes the uploaded data to a file.
//Standardization and determining other factors will be performed in
// a Matlab/Octave script.
include("header_new.inc");
include("header_batchsearch.inc");
include("runtime_check.php");
$searchID="";
$UploadValue="NO";
$TextFile=$HTTP_POST_FILES["MyFile"]["name"];
/////////////Generate a random key/////////////////////
$alphas=array();
$alphas = array_merge(range('A', 'Z'), range('a', 'z'));
$al1=rand(0,51);
$al2=rand(0,51);
$al3=rand(0,51);
$alpha="$alphas[$al1]"."$alphas[$al2]"."$alphas[$al3]";
$keyval=$alpha;
if($_POST["My_key"]!="")
$keyval=$_POST["My_key"];
$sid=$keyval."continuous_input";
$dir="./data/";
$TextinFile=$dir.$sid."_orig.txt";
if(isset($HTTP_POST_VARS["searchkey"]))
{
$searchID=$HTTP_POST_VARS["searchkey"];
}
if($searchID=="")
{
?>
<!-- Site navigation menu -->
<ul class="navbar">
<li><a href="help.php#file_format" target="_blank">Data formatting guidelines</a>
<li><a href="help.php" target="_blank">Help</a>
<li><a href="home.php">Home</a>
</ul>
<?php
}
if(isset($HTTP_POST_VARS["MyUpload"]))
{
$UploadValue=$HTTP_POST_VARS["MyUpload"];
if ($UploadValue=="YES")
{
if($TextFile!="")
{
$sta=move_uploaded_file($HTTP_POST_FILES['MyFile']['tmp_name'],$TextinFile);
if(!$sta)
{
echo "<script type='text/javascript'> window.alert ('Sorry, error uploading $TextFile.')</script>";
flush();
exit();
}
else
{
$searchID=file_get_contents("$TextinFile");
//unlink($TextinFile);
}
}
else
{
echo "<script type='text/javascript'> window.alert ('Sorry, please select upload file.')</script>";
}
}
}
?>
<div id="outernew">
<h2><font color=#33339f>Upload data file for structure learning search</font></h2>
<FORM name="key_search" enctype="multipart/form-data" ACTION="bn_file_load_gom.php" METHOD=POST>
<table align="left" cellspacing="3" cellpadding="1" border="0" width="60%">
<tr>
<td>
<INPUT style="background-color:#FFFFFF;color:#0000FF" type="file" name="MyFile" size=45 >
<INPUT TYPE="submit" value=" Upload " onclick="return Upload();">
<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
<INPUT TYPE="hidden" name="MyUpload" value="NO">
</td>
</tr>
<tr>
<td align="left"><font color=#33339f><br>Content of uploaded data file:</font><br>
<textarea name="searchkey" rows="8" cols="100"><?PHP print($searchID)?> </textarea>
</td>
</tr>
<tr>
<td>
<INPUT TYPE="submit" value=" Load example data of immune responses to infection with Chlamydia psittaci " onclick="return demochl();">   
<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
</td>
</tr>
<tr>
<td>
<INPUT TYPE="submit" value=" Load example data of a synthetic genetic network with 2 genotypes and 6 traits " onclick="return demo8nodes();">   
<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
</td>
</tr>
<tr>
<td>
<INPUT TYPE="submit" value=" Load example data of immune-related gene in the spleens of BXD mice " onclick="return demospnl();">   
<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
</td>
</tr>
<tr>
<td>
<INPUT TYPE="submit" value=" Load the ksl dataset from deal " onclick="return demoksl();">   
<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
</td>
</tr>
<tr>
<td>
<INPUT TYPE="submit" value=" Load the rat dataset from deal " onclick="return demorat();">   
<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
</td>
</tr>
</table>
</FORM>
</div>
<?php
if($searchID!="")
{
if ($UploadValue=="NO")
{
$fpdata = fopen($dir.$keyval."continuous_input_orig.txt","w");
fwrite($fpdata,$searchID);
}
shell_exec('./run_prep_input '.$keyval);
$parent_number=4;
$k_number=1;
$runtime=exe_time($keyval,$parent_number,$k_number);
?>
<ul class="navbar2">
<li><a href="executionprogress.php?My_key=<?php print($keyval);?>">Perform Bayesian network modeling using default settings</a>
<li><a href="create_tiers_gom.php?My_key=<?php print($keyval);?>">Go to structure learning settings and the BNW structural constraint interface</a>
<li><a href="javascript:void(0);"
NAME="InputCheck" title="InputCheck"
onClick=window.open("input_check.php?My_key=<?php print($keyval);?>","Rat//ting","width=950,height=270,0,status=0,");>View uploaded variables and data</a>
</ul>
<ul class="navbar">
<li><a href="help.php" target="_blank">Help</a>
<li><a href="home.php">Home</a>
</ul>
<div id="outernew">
<p><h3><?php
print("Estimated run time for current dataset using default settings: $runtime seconds");
?>
<br><br><br><br></h3>
</p>
<br>
<br>
<br>
<br>
<br>
<br>
<br>
</div>
<?php
}
?>
</body>
</html>
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