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This is out of date, but I will leave it here until I can update it.
This file will contain notes about changes that might need to be made on a new server:
Required software:
1) Octave
BNW assumes Octave can be executed using /usr/bin/octave
The current version of Octave is 3.4.3
2) dot/graphviz
BNW assumes the graphviz command dot can be executed using /usr/bin/dot
The current version of graphviz is 2.26.0
3) plotly
I installed a local copy of python in my home directory to run plotly on the old server, so there are a couple of lines that point to
this python/plotly.
The current version of plotly is 3.2.1. It uses Python 2.7.
Specific changes that need to be made:
1) Files that use Octave:
Header lines in all of the files in the run_scripts directory
2) Files that use dot:
-network_layout_evd_2_example.php: line 275
-network_layout_evd_2.php: line 247
-network_layout_inv_2_example.php: line 360
-network_layout_inv_2.php: line 360
-network_layout_inv.php: line 102
-network_layout_inv_example.php: line 150
-network_layout_evd.php: line 114
-network_layout_evd_example.php: line 117
3) Files that use plotly:
cv_plotly.py: header line
ts_plotly.py: header line
kfold_plotly.py: header line
4) Other changes:
home.php might need to be modified
The structure learning package might need to be recompiled. If so, running build.sh in the sourcecodes directory will hopefully work. It uses gcc
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