diff options
Diffstat (limited to 'sourcecodes')
154 files changed, 0 insertions, 13025 deletions
diff --git a/sourcecodes/data/example1/Bqxmapdata.txt b/sourcecodes/data/example1/Bqxmapdata.txt deleted file mode 100644 index 42b2fd9c..00000000 --- a/sourcecodes/data/example1/Bqxmapdata.txt +++ /dev/null @@ -1 +0,0 @@ -Trait5 Geno2 Trait6 Trait3 Geno1 Trait2 Trait4 Trait1 diff --git a/sourcecodes/data/example1/Bqxname.txt b/sourcecodes/data/example1/Bqxname.txt deleted file mode 100644 index 8f42b468..00000000 --- a/sourcecodes/data/example1/Bqxname.txt +++ /dev/null @@ -1 +0,0 @@ -Geno1 Geno2 Trait1 Trait2 Trait3 Trait4 Trait5 Trait6 diff --git a/sourcecodes/data/example1/Bqxnet_figure.txt b/sourcecodes/data/example1/Bqxnet_figure.txt deleted file mode 100644 index 11113895..00000000 --- a/sourcecodes/data/example1/Bqxnet_figure.txt +++ /dev/null @@ -1,652 +0,0 @@ -8 -1200 1200 -Trait5 0 0 -Geno2 300 0 -Trait6 220 240 -Trait3 100 480 -Geno1 600 0 -Trait2 620 240 -Trait4 420 720 -Trait1 500 480 -Trait5 1 -250 150 -0 -0 --3.2055 0.0025 --3.1368 0.0030 --3.0681 0.0038 --2.9994 0.0046 --2.9308 0.0057 --2.8621 0.0069 --2.7934 0.0083 --2.7247 0.0101 --2.6561 0.0121 --2.5874 0.0144 --2.5187 0.0172 --2.4500 0.0203 --2.3813 0.0240 --2.3127 0.0281 --2.2440 0.0328 --2.1753 0.0381 --2.1066 0.0441 --2.0379 0.0508 --1.9693 0.0582 --1.9006 0.0664 --1.8319 0.0754 --1.7632 0.0852 --1.6945 0.0958 --1.6259 0.1073 --1.5572 0.1195 --1.4885 0.1326 --1.4198 0.1463 --1.3511 0.1608 --1.2825 0.1758 --1.2138 0.1914 --1.1451 0.2074 --1.0764 0.2237 --1.0078 0.2401 --0.9391 0.2565 --0.8704 0.2728 --0.8017 0.2888 --0.7330 0.3042 --0.6644 0.3190 --0.5957 0.3330 --0.5270 0.3460 --0.4583 0.3578 --0.3896 0.3682 --0.3210 0.3772 --0.2523 0.3846 --0.1836 0.3904 --0.1149 0.3944 --0.0462 0.3965 -0.0224 0.3969 -0.0911 0.3953 -0.1598 0.3920 -0.2285 0.3868 -0.2971 0.3800 -0.3658 0.3715 -0.4345 0.3615 -0.5032 0.3502 -0.5719 0.3376 -0.6405 0.3240 -0.7092 0.3095 -0.7779 0.2942 -0.8466 0.2784 -0.9153 0.2622 -0.9839 0.2458 -1.0526 0.2294 -1.1213 0.2130 -1.1900 0.1969 -1.2587 0.1812 -1.3273 0.1659 -1.3960 0.1513 -1.4647 0.1373 -1.5334 0.1240 -1.6021 0.1114 -1.6707 0.0997 -1.7394 0.0888 -1.8081 0.0787 -1.8768 0.0694 -1.9454 0.0610 -2.0141 0.0533 -2.0828 0.0464 -2.1515 0.0401 -2.2202 0.0346 -2.2888 0.0297 -2.3575 0.0253 -2.4262 0.0215 -2.4949 0.0182 -2.5636 0.0153 -2.6322 0.0129 -2.7009 0.0107 -2.7696 0.0089 -2.8383 0.0074 -2.9070 0.0061 -2.9756 0.0050 -3.0443 0.0040 -3.1130 0.0033 -3.1817 0.0026 -3.2503 0.0021 -3.3190 0.0017 -3.3877 0.0014 -3.4564 0.0011 -3.5251 0.0008 -3.5937 0.0007 -3.6624 0.0005 -Geno2 2 -250 150 -0 -3 3 4 7 -1 0.4300 -2 0.5700 -Trait6 1 -250 150 -1 2 -1 4 --3.6825 0.0005 --3.6140 0.0006 --3.5455 0.0008 --3.4769 0.0010 --3.4084 0.0013 --3.3399 0.0016 --3.2713 0.0020 --3.2028 0.0025 --3.1343 0.0031 --3.0658 0.0038 --2.9972 0.0046 --2.9287 0.0057 --2.8602 0.0069 --2.7917 0.0084 --2.7231 0.0101 --2.6546 0.0121 --2.5861 0.0145 --2.5176 0.0172 --2.4490 0.0204 --2.3805 0.0240 --2.3120 0.0282 --2.2435 0.0329 --2.1749 0.0382 --2.1064 0.0441 --2.0379 0.0508 --1.9694 0.0582 --1.9008 0.0664 --1.8323 0.0753 --1.7638 0.0851 --1.6953 0.0957 --1.6267 0.1071 --1.5582 0.1193 --1.4897 0.1323 --1.4212 0.1461 --1.3526 0.1605 --1.2841 0.1755 --1.2156 0.1910 --1.1471 0.2069 --1.0785 0.2232 --1.0100 0.2396 --0.9415 0.2560 --0.8730 0.2722 --0.8044 0.2881 --0.7359 0.3036 --0.6674 0.3184 --0.5989 0.3324 --0.5303 0.3454 --0.4618 0.3572 --0.3933 0.3677 --0.3248 0.3768 --0.2562 0.3843 --0.1877 0.3901 --0.1192 0.3942 --0.0507 0.3965 -0.0179 0.3969 -0.0864 0.3955 -0.1549 0.3923 -0.2234 0.3873 -0.2920 0.3806 -0.3605 0.3722 -0.4290 0.3624 -0.4975 0.3512 -0.5661 0.3387 -0.6346 0.3252 -0.7031 0.3108 -0.7716 0.2956 -0.8402 0.2799 -0.9087 0.2638 -0.9772 0.2474 -1.0457 0.2310 -1.1143 0.2147 -1.1828 0.1986 -1.2513 0.1829 -1.3198 0.1676 -1.3884 0.1529 -1.4569 0.1388 -1.5254 0.1255 -1.5939 0.1129 -1.6625 0.1011 -1.7310 0.0901 -1.7995 0.0799 -1.8680 0.0706 -1.9366 0.0620 -2.0051 0.0542 -2.0736 0.0472 -2.1421 0.0409 -2.2107 0.0353 -2.2792 0.0303 -2.3477 0.0259 -2.4162 0.0221 -2.4848 0.0187 -2.5533 0.0157 -2.6218 0.0132 -2.6903 0.0110 -2.7589 0.0092 -2.8274 0.0076 -2.8959 0.0062 -2.9644 0.0051 -3.0330 0.0042 -3.1015 0.0034 -3.1700 0.0027 -Trait3 1 -250 150 -2 2 3 -1 7 --2.7825 0.0086 --2.7216 0.0101 --2.6608 0.0119 --2.5999 0.0140 --2.5390 0.0163 --2.4782 0.0190 --2.4173 0.0220 --2.3565 0.0254 --2.2956 0.0292 --2.2347 0.0335 --2.1739 0.0383 --2.1130 0.0435 --2.0521 0.0494 --1.9913 0.0558 --1.9304 0.0628 --1.8695 0.0704 --1.8087 0.0786 --1.7478 0.0875 --1.6870 0.0970 --1.6261 0.1072 --1.5652 0.1181 --1.5044 0.1295 --1.4435 0.1415 --1.3826 0.1541 --1.3218 0.1672 --1.2609 0.1807 --1.2000 0.1946 --1.1392 0.2088 --1.0783 0.2232 --1.0175 0.2378 --0.9566 0.2524 --0.8957 0.2668 --0.8349 0.2811 --0.7740 0.2951 --0.7131 0.3086 --0.6523 0.3216 --0.5914 0.3338 --0.5305 0.3453 --0.4697 0.3559 --0.4088 0.3654 --0.3480 0.3738 --0.2871 0.3811 --0.2262 0.3870 --0.1654 0.3916 --0.1045 0.3948 --0.0436 0.3966 -0.0172 0.3969 -0.0781 0.3957 -0.1389 0.3932 -0.1998 0.3892 -0.2607 0.3838 -0.3215 0.3771 -0.3824 0.3692 -0.4433 0.3601 -0.5041 0.3500 -0.5650 0.3389 -0.6259 0.3270 -0.6867 0.3143 -0.7476 0.3010 -0.8084 0.2872 -0.8693 0.2731 -0.9302 0.2587 -0.9910 0.2441 -1.0519 0.2295 -1.1128 0.2150 -1.1736 0.2007 -1.2345 0.1867 -1.2954 0.1730 -1.3562 0.1597 -1.4171 0.1469 -1.4779 0.1346 -1.5388 0.1229 -1.5997 0.1119 -1.6605 0.1014 -1.7214 0.0916 -1.7823 0.0824 -1.8431 0.0739 -1.9040 0.0660 -1.9649 0.0587 -2.0257 0.0521 -2.0866 0.0460 -2.1474 0.0405 -2.2083 0.0355 -2.2692 0.0310 -2.3300 0.0270 -2.3909 0.0234 -2.4518 0.0203 -2.5126 0.0174 -2.5735 0.0150 -2.6344 0.0128 -2.6952 0.0109 -2.7561 0.0092 -2.8169 0.0078 -2.8778 0.0066 -2.9387 0.0055 -2.9995 0.0046 -3.0604 0.0038 -3.1213 0.0032 -3.1821 0.0026 -3.2430 0.0022 -3.3039 0.0018 -Geno1 2 -250 150 -0 -1 6 -1 0.6650 -2 0.3350 -Trait2 1 -250 150 -1 5 -2 7 8 --3.0753 0.0037 --3.0078 0.0045 --2.9403 0.0055 --2.8728 0.0067 --2.8053 0.0081 --2.7378 0.0097 --2.6702 0.0116 --2.6027 0.0139 --2.5352 0.0165 --2.4677 0.0195 --2.4002 0.0229 --2.3327 0.0268 --2.2652 0.0313 --2.1977 0.0363 --2.1302 0.0420 --2.0627 0.0483 --1.9951 0.0553 --1.9276 0.0631 --1.8601 0.0716 --1.7926 0.0809 --1.7251 0.0910 --1.6576 0.1019 --1.5901 0.1135 --1.5226 0.1260 --1.4551 0.1392 --1.3876 0.1530 --1.3201 0.1675 --1.2525 0.1826 --1.1850 0.1981 --1.1175 0.2139 --1.0500 0.2300 --0.9825 0.2462 --0.9150 0.2623 --0.8475 0.2782 --0.7800 0.2937 --0.7125 0.3088 --0.6450 0.3231 --0.5775 0.3366 --0.5099 0.3490 --0.4424 0.3603 --0.3749 0.3703 --0.3074 0.3788 --0.2399 0.3858 --0.1724 0.3912 --0.1049 0.3948 --0.0374 0.3967 -0.0301 0.3968 -0.0976 0.3951 -0.1652 0.3916 -0.2327 0.3865 -0.3002 0.3796 -0.3677 0.3713 -0.4352 0.3614 -0.5027 0.3503 -0.5702 0.3379 -0.6377 0.3246 -0.7052 0.3103 -0.7727 0.2954 -0.8402 0.2799 -0.9078 0.2640 -0.9753 0.2479 -1.0428 0.2317 -1.1103 0.2156 -1.1778 0.1998 -1.2453 0.1842 -1.3128 0.1691 -1.3803 0.1546 -1.4478 0.1406 -1.5153 0.1274 -1.5829 0.1148 -1.6504 0.1031 -1.7179 0.0921 -1.7854 0.0819 -1.8529 0.0725 -1.9204 0.0640 -1.9879 0.0561 -2.0554 0.0490 -2.1229 0.0426 -2.1904 0.0369 -2.2579 0.0318 -2.3255 0.0273 -2.3930 0.0233 -2.4605 0.0198 -2.5280 0.0168 -2.5955 0.0141 -2.6630 0.0119 -2.7305 0.0099 -2.7980 0.0082 -2.8655 0.0068 -2.9330 0.0056 -3.0005 0.0046 -3.0681 0.0038 -3.1356 0.0031 -3.2031 0.0025 -3.2706 0.0020 -3.3381 0.0016 -3.4056 0.0013 -3.4731 0.0010 -3.5406 0.0008 -3.6081 0.0006 -3.6756 0.0005 -Trait4 1 -250 150 -3 2 4 6 -0 --3.2636 0.0025 --3.1926 0.0031 --3.1216 0.0039 --3.0506 0.0048 --2.9796 0.0059 --2.9086 0.0071 --2.8376 0.0086 --2.7666 0.0104 --2.6957 0.0125 --2.6247 0.0150 --2.5537 0.0178 --2.4827 0.0211 --2.4117 0.0248 --2.3407 0.0291 --2.2697 0.0340 --2.1987 0.0395 --2.1277 0.0456 --2.0567 0.0525 --1.9857 0.0601 --1.9148 0.0685 --1.8438 0.0777 --1.7728 0.0877 --1.7018 0.0986 --1.6308 0.1102 --1.5598 0.1226 --1.4888 0.1358 --1.4178 0.1497 --1.3468 0.1643 --1.2758 0.1794 --1.2049 0.1949 --1.1339 0.2108 --1.0629 0.2270 --0.9919 0.2432 --0.9209 0.2593 --0.8499 0.2751 --0.7789 0.2906 --0.7079 0.3055 --0.6369 0.3196 --0.5659 0.3328 --0.4949 0.3448 --0.4240 0.3557 --0.3530 0.3651 --0.2820 0.3730 --0.2110 0.3792 --0.1400 0.3838 --0.0690 0.3865 -0.0020 0.3874 -0.0730 0.3865 -0.1440 0.3838 -0.2150 0.3792 -0.2859 0.3730 -0.3569 0.3651 -0.4279 0.3557 -0.4989 0.3448 -0.5699 0.3328 -0.6409 0.3196 -0.7119 0.3055 -0.7829 0.2906 -0.8539 0.2752 -0.9249 0.2593 -0.9959 0.2432 -1.0668 0.2270 -1.1378 0.2109 -1.2088 0.1950 -1.2798 0.1794 -1.3508 0.1643 -1.4218 0.1498 -1.4928 0.1359 -1.5638 0.1227 -1.6348 0.1102 -1.7058 0.0986 -1.7767 0.0877 -1.8477 0.0777 -1.9187 0.0685 -1.9897 0.0601 -2.0607 0.0525 -2.1317 0.0456 -2.2027 0.0395 -2.2737 0.0340 -2.3447 0.0291 -2.4157 0.0248 -2.4867 0.0211 -2.5576 0.0178 -2.6286 0.0150 -2.6996 0.0125 -2.7706 0.0104 -2.8416 0.0086 -2.9126 0.0071 -2.9836 0.0059 -3.0546 0.0048 -3.1256 0.0039 -3.1966 0.0031 -3.2675 0.0025 -3.3385 0.0020 -3.4095 0.0016 -3.4805 0.0013 -3.5515 0.0010 -3.6225 0.0008 -3.6935 0.0006 -3.7645 0.0005 -3.8355 0.0004 -Trait1 1 -250 150 -1 6 -0 --3.6875 0.0005 --3.6097 0.0006 --3.5318 0.0008 --3.4540 0.0011 --3.3761 0.0014 --3.2983 0.0018 --3.2204 0.0024 --3.1425 0.0030 --3.0647 0.0038 --2.9868 0.0048 --2.9090 0.0061 --2.8311 0.0076 --2.7533 0.0094 --2.6754 0.0115 --2.5976 0.0141 --2.5197 0.0172 --2.4418 0.0208 --2.3640 0.0251 --2.2861 0.0300 --2.2083 0.0356 --2.1304 0.0421 --2.0526 0.0495 --1.9747 0.0577 --1.8969 0.0670 --1.8190 0.0773 --1.7411 0.0887 --1.6633 0.1011 --1.5854 0.1145 --1.5076 0.1290 --1.4297 0.1444 --1.3519 0.1608 --1.2740 0.1778 --1.1962 0.1956 --1.1183 0.2138 --1.0404 0.2323 --0.9626 0.2509 --0.8847 0.2694 --0.8069 0.2875 --0.7290 0.3050 --0.6512 0.3216 --0.5733 0.3371 --0.4955 0.3513 --0.4176 0.3639 --0.3397 0.3746 --0.2619 0.3834 --0.1840 0.3900 --0.1062 0.3944 --0.0283 0.3964 -0.0495 0.3961 -0.1274 0.3934 -0.2052 0.3884 -0.2831 0.3812 -0.3610 0.3719 -0.4388 0.3606 -0.5167 0.3476 -0.5945 0.3330 -0.6724 0.3172 -0.7502 0.3003 -0.8281 0.2826 -0.9059 0.2644 -0.9838 0.2458 -1.0617 0.2272 -1.1395 0.2088 -1.2174 0.1907 -1.2952 0.1731 -1.3731 0.1562 -1.4509 0.1401 -1.5288 0.1250 -1.6066 0.1108 -1.6845 0.0976 -1.7624 0.0855 -1.8402 0.0744 -1.9181 0.0644 -1.9959 0.0554 -2.0738 0.0474 -2.1516 0.0403 -2.2295 0.0340 -2.3073 0.0286 -2.3852 0.0238 -2.4631 0.0198 -2.5409 0.0163 -2.6188 0.0134 -2.6966 0.0109 -2.7745 0.0088 -2.8523 0.0071 -2.9302 0.0057 -3.0080 0.0045 -3.0859 0.0036 -3.1638 0.0028 -3.2416 0.0022 -3.3195 0.0017 -3.3973 0.0013 -3.4752 0.0010 -3.5530 0.0008 -3.6309 0.0006 -3.7087 0.0004 -3.7866 0.0003 -3.8645 0.0002 -3.9423 0.0002 -4.0202 0.0001 -4.0980 0.0001 diff --git a/sourcecodes/data/example1/Bqxnlevels.txt b/sourcecodes/data/example1/Bqxnlevels.txt deleted file mode 100644 index 32457058..00000000 --- a/sourcecodes/data/example1/Bqxnlevels.txt +++ /dev/null @@ -1,4 +0,0 @@ -Geno1 1 2 -Geno2 1 2 - - diff --git a/sourcecodes/data/example1/Bqxnnode.txt b/sourcecodes/data/example1/Bqxnnode.txt deleted file mode 100644 index 45a4fb75..00000000 --- a/sourcecodes/data/example1/Bqxnnode.txt +++ /dev/null @@ -1 +0,0 @@ -8 diff --git a/sourcecodes/data/example1/Bqxnrows.txt b/sourcecodes/data/example1/Bqxnrows.txt deleted file mode 100644 index 3bc92d44..00000000 --- a/sourcecodes/data/example1/Bqxnrows.txt +++ /dev/null @@ -1 +0,0 @@ -201 diff --git a/sourcecodes/data/example1/Bqxparameters.txt b/sourcecodes/data/example1/Bqxparameters.txt deleted file mode 100644 index d1345709..00000000 --- a/sourcecodes/data/example1/Bqxparameters.txt +++ /dev/null @@ -1,34 +0,0 @@ -Geno1 -Discrete node with 2 states -1 0.6650 -2 0.3350 - -Geno2 -Discrete node with 2 states -1 0.4300 -2 0.5700 - -Trait1 -Continuous node --0.0239 0.6720 - -Trait2 -Continuous node -0.0386 0.8009 - -Trait3 -Continuous node -0.0687 1.0420 - -Trait4 -Continuous node --0.0081 1.0133 - -Trait5 -Continuous node -0.0089 0.3181 - -Trait6 -Continuous node --0.1143 0.9091 - diff --git a/sourcecodes/data/example1/Bqxparent.txt b/sourcecodes/data/example1/Bqxparent.txt deleted file mode 100644 index b8626c4c..00000000 --- a/sourcecodes/data/example1/Bqxparent.txt +++ /dev/null @@ -1 +0,0 @@ -4 diff --git a/sourcecodes/data/example1/Bqxstructure_old.txt b/sourcecodes/data/example1/Bqxstructure_old.txt deleted file mode 100644 index 7749d17e..00000000 --- a/sourcecodes/data/example1/Bqxstructure_old.txt +++ /dev/null @@ -1,7 +0,0 @@ -Geno1 0.6650 0.3350 -Trait2 0.0037 0.0045 0.0055 0.0067 0.0081 0.0097 0.0116 0.0139 0.0165 0.0195 0.0229 0.0268 0.0313 0.0363 0.0420 0.0483 0.0553 0.0631 0.0716 0.0809 0.0910 0.1019 0.1135 0.1260 0.1392 0.1530 0.1675 0.1826 0.1981 0.2139 0.2300 0.2462 0.2623 0.2782 0.2937 0.3088 0.3231 0.3366 0.3490 0.3603 0.3703 0.3788 0.3858 0.3912 0.3948 0.3967 0.3968 0.3951 0.3916 0.3865 0.3796 0.3713 0.3614 0.3503 0.3379 0.3246 0.3103 0.2954 0.2799 0.2640 0.2479 0.2317 0.2156 0.1998 0.1842 0.1691 0.1546 0.1406 0.1274 0.1148 0.1031 0.0921 0.0819 0.0725 0.0640 0.0561 0.0490 0.0426 0.0369 0.0318 0.0273 0.0233 0.0198 0.0168 0.0141 0.0119 0.0099 0.0082 0.0068 0.0056 0.0046 0.0038 0.0031 0.0025 0.0020 0.0016 0.0013 0.0010 0.0008 0.0006 0.0005 -Geno2 0.4300 0.5700 -Trait3 0.0086 0.0101 0.0119 0.0140 0.0163 0.0190 0.0220 0.0254 0.0292 0.0335 0.0383 0.0435 0.0494 0.0558 0.0628 0.0704 0.0786 0.0875 0.0970 0.1072 0.1181 0.1295 0.1415 0.1541 0.1672 0.1807 0.1946 0.2088 0.2232 0.2378 0.2524 0.2668 0.2811 0.2951 0.3086 0.3216 0.3338 0.3453 0.3559 0.3654 0.3738 0.3811 0.3870 0.3916 0.3948 0.3966 0.3969 0.3957 0.3932 0.3892 0.3838 0.3771 0.3692 0.3601 0.3500 0.3389 0.3270 0.3143 0.3010 0.2872 0.2731 0.2587 0.2441 0.2295 0.2150 0.2007 0.1867 0.1730 0.1597 0.1469 0.1346 0.1229 0.1119 0.1014 0.0916 0.0824 0.0739 0.0660 0.0587 0.0521 0.0460 0.0405 0.0355 0.0310 0.0270 0.0234 0.0203 0.0174 0.0150 0.0128 0.0109 0.0092 0.0078 0.0066 0.0055 0.0046 0.0038 0.0032 0.0026 0.0022 0.0018 -Trait4 0.0025 0.0031 0.0039 0.0048 0.0059 0.0071 0.0086 0.0104 0.0125 0.0150 0.0178 0.0211 0.0248 0.0291 0.0340 0.0395 0.0456 0.0525 0.0601 0.0685 0.0777 0.0877 0.0986 0.1102 0.1226 0.1358 0.1497 0.1643 0.1794 0.1949 0.2108 0.2270 0.2432 0.2593 0.2751 0.2906 0.3055 0.3196 0.3328 0.3448 0.3557 0.3651 0.3730 0.3792 0.3838 0.3865 0.3874 0.3865 0.3838 0.3792 0.3730 0.3651 0.3557 0.3448 0.3328 0.3196 0.3055 0.2906 0.2752 0.2593 0.2432 0.2270 0.2109 0.1950 0.1794 0.1643 0.1498 0.1359 0.1227 0.1102 0.0986 0.0877 0.0777 0.0685 0.0601 0.0525 0.0456 0.0395 0.0340 0.0291 0.0248 0.0211 0.0178 0.0150 0.0125 0.0104 0.0086 0.0071 0.0059 0.0048 0.0039 0.0031 0.0025 0.0020 0.0016 0.0013 0.0010 0.0008 0.0006 0.0005 0.0004 -Trait6 0.0005 0.0006 0.0008 0.0010 0.0013 0.0016 0.0020 0.0025 0.0031 0.0038 0.0046 0.0057 0.0069 0.0084 0.0101 0.0121 0.0145 0.0172 0.0204 0.0240 0.0282 0.0329 0.0382 0.0441 0.0508 0.0582 0.0664 0.0753 0.0851 0.0957 0.1071 0.1193 0.1323 0.1461 0.1605 0.1755 0.1910 0.2069 0.2232 0.2396 0.2560 0.2722 0.2881 0.3036 0.3184 0.3324 0.3454 0.3572 0.3677 0.3768 0.3843 0.3901 0.3942 0.3965 0.3969 0.3955 0.3923 0.3873 0.3806 0.3722 0.3624 0.3512 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a/sourcecodes/data/example1/Bqxthr.txt b/sourcecodes/data/example1/Bqxthr.txt deleted file mode 100644 index 2eb3c4fe..00000000 --- a/sourcecodes/data/example1/Bqxthr.txt +++ /dev/null @@ -1 +0,0 @@ -0.5 diff --git a/sourcecodes/data/example1/Bqxtier.txt b/sourcecodes/data/example1/Bqxtier.txt deleted file mode 100644 index bc94239b..00000000 --- a/sourcecodes/data/example1/Bqxtier.txt +++ /dev/null @@ -1 +0,0 @@ -3,Tier1,0,Tier2,0,Tier3,0, \ No newline at end of file diff --git a/sourcecodes/data/example1/Bqxtype.txt b/sourcecodes/data/example1/Bqxtype.txt deleted file mode 100644 index 285a68af..00000000 --- a/sourcecodes/data/example1/Bqxtype.txt +++ /dev/null @@ -1,2 +0,0 @@ -Geno1 Geno2 Trait1 Trait2 Trait3 Trait4 Trait5 Trait6 -2 2 1 1 1 1 1 1 diff --git a/sourcecodes/data/example1/Bqxwhite.txt b/sourcecodes/data/example1/Bqxwhite.txt deleted file mode 100644 index 83e81b8b..00000000 --- a/sourcecodes/data/example1/Bqxwhite.txt +++ /dev/null @@ -1 +0,0 @@ -From To diff --git a/sourcecodes/data/example2/hQGban.txt b/sourcecodes/data/example2/hQGban.txt deleted file mode 100644 index 83e81b8b..00000000 --- a/sourcecodes/data/example2/hQGban.txt +++ /dev/null @@ -1 +0,0 @@ -From To diff --git a/sourcecodes/data/example2/hQGcontinuous_input.txt b/sourcecodes/data/example2/hQGcontinuous_input.txt deleted file mode 100644 index 5e296c45..00000000 --- a/sourcecodes/data/example2/hQGcontinuous_input.txt +++ /dev/null @@ -1,203 +0,0 @@ -Geno1 Geno2 Trait1 Trait2 Trait3 Trait4 Trait5 Trait6 -2 2 1 1 1 1 1 1 -2 2 0.46259 1.2692 -1.3164 -0.44096 0.5929 -0.75422 -1 1 -0.10011 -0.88834 1.6407 0.99972 0.31288 0.65602 -1 1 -1.0533 -0.55296 1.2715 1.3686 -0.19153 0.37361 -1 2 0.042371 0.13573 -0.72659 -0.66133 0.43157 -1.6715 -1 2 -0.68686 -1.6152 -0.95019 -1.2239 0.12319 -0.79155 -1 1 -0.4558 0.090877 0.94224 1.2354 -0.36356 0.34937 -1 1 0.237 -0.49002 1.8939 1.4399 0.033059 1.3229 -1 2 0.070265 0.22547 -1.4903 -0.069341 -0.16148 -0.01449 -1 1 -0.69146 -0.43461 1.1501 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-1.5538 -1 2 0.15067 0.41827 -1.0487 -1.0551 0.19143 -1.4537 -1 2 -1.073 0.022587 -1.7088 -1.3777 0.1964 -0.84025 -2 1 0.20928 1.8026 1.2073 2.78 0.15131 0.3448 -1 2 -1.1317 -0.6359 -0.70457 -1.676 -0.22886 -0.58769 -1 1 -0.039428 -0.58746 0.56 0.7896 -0.052581 0.99511 -1 2 0.55023 -0.20403 0.138 -0.70518 0.66927 -0.28861 -2 2 0.57423 1.1886 0.092876 0.025677 -0.41099 -1.2858 -2 2 -0.14179 1.5827 -0.94328 0.7703 -0.43967 -0.50448 -2 2 0.14666 1.0492 -0.0030259 -0.62418 -0.087515 -0.048386 - diff --git a/sourcecodes/data/example2/hQGgraphviz.txt b/sourcecodes/data/example2/hQGgraphviz.txt deleted file mode 100644 index 7f279843..00000000 --- a/sourcecodes/data/example2/hQGgraphviz.txt +++ /dev/null @@ -1,11 +0,0 @@ -digraph G { -size="10,10"; ratio = fill; -node [shape=square,width=1.5]; -Geno1 -> Trait2; -Geno2 -> Trait3; -Geno2 -> Trait4; -Geno2 -> Trait6; -Trait2 -> Trait1; -Trait2 -> Trait4; -Trait3 -> Trait4; -} \ No newline at end of file diff --git a/sourcecodes/data/example2/hQGk.txt b/sourcecodes/data/example2/hQGk.txt deleted file mode 100644 index 29d6383b..00000000 --- a/sourcecodes/data/example2/hQGk.txt +++ /dev/null @@ -1 +0,0 @@ -100 diff --git a/sourcecodes/data/example2/hQGmap.txt b/sourcecodes/data/example2/hQGmap.txt deleted file mode 100644 index dc9ba9be..00000000 --- a/sourcecodes/data/example2/hQGmap.txt +++ /dev/null @@ -1,8 +0,0 @@ -Geno1 0.473175 1.335000 -Geno2 0.496318 1.570000 -Trait1 0.668009 -0.023903 -Trait2 0.796873 0.038552 -Trait3 1.036694 0.068708 -Trait4 0.984008 -0.010125 -Trait5 0.316471 0.008911 -Trait6 0.904542 -0.114267 diff --git a/sourcecodes/data/example2/hQGmapdata.txt b/sourcecodes/data/example2/hQGmapdata.txt deleted file mode 100644 index 42b2fd9c..00000000 --- a/sourcecodes/data/example2/hQGmapdata.txt +++ /dev/null @@ -1 +0,0 @@ -Trait5 Geno2 Trait6 Trait3 Geno1 Trait2 Trait4 Trait1 diff --git a/sourcecodes/data/example2/hQGname.txt b/sourcecodes/data/example2/hQGname.txt deleted file mode 100644 index 8f42b468..00000000 --- a/sourcecodes/data/example2/hQGname.txt +++ /dev/null @@ -1 +0,0 @@ -Geno1 Geno2 Trait1 Trait2 Trait3 Trait4 Trait5 Trait6 diff --git a/sourcecodes/data/example2/hQGnet_figure.txt b/sourcecodes/data/example2/hQGnet_figure.txt deleted file mode 100644 index 893f9f14..00000000 --- a/sourcecodes/data/example2/hQGnet_figure.txt +++ /dev/null @@ -1,652 +0,0 @@ -8 -1200 1200 -Trait5 0 0 -Geno2 300 0 -Trait6 120 300 -Trait3 420 300 -Geno1 600 0 -Trait2 720 300 -Trait4 100 600 -Trait1 500 600 -Trait5 1 -250 150 -0 -0 --3.2055 0.0025 --3.1368 0.0030 --3.0681 0.0038 --2.9994 0.0046 --2.9308 0.0057 --2.8621 0.0069 --2.7934 0.0083 --2.7247 0.0101 --2.6561 0.0121 --2.5874 0.0144 --2.5187 0.0172 --2.4500 0.0203 --2.3813 0.0240 --2.3127 0.0281 --2.2440 0.0328 --2.1753 0.0381 --2.1066 0.0441 --2.0379 0.0508 --1.9693 0.0582 --1.9006 0.0664 --1.8319 0.0754 --1.7632 0.0852 --1.6945 0.0958 --1.6259 0.1073 --1.5572 0.1195 --1.4885 0.1326 --1.4198 0.1463 --1.3511 0.1608 --1.2825 0.1758 --1.2138 0.1914 --1.1451 0.2074 --1.0764 0.2237 --1.0078 0.2401 --0.9391 0.2565 --0.8704 0.2728 --0.8017 0.2888 --0.7330 0.3042 --0.6644 0.3190 --0.5957 0.3330 --0.5270 0.3460 --0.4583 0.3578 --0.3896 0.3682 --0.3210 0.3772 --0.2523 0.3846 --0.1836 0.3904 --0.1149 0.3944 --0.0462 0.3965 -0.0224 0.3969 -0.0911 0.3953 -0.1598 0.3920 -0.2285 0.3868 -0.2971 0.3800 -0.3658 0.3715 -0.4345 0.3615 -0.5032 0.3502 -0.5719 0.3376 -0.6405 0.3240 -0.7092 0.3095 -0.7779 0.2942 -0.8466 0.2784 -0.9153 0.2622 -0.9839 0.2458 -1.0526 0.2294 -1.1213 0.2130 -1.1900 0.1969 -1.2587 0.1812 -1.3273 0.1659 -1.3960 0.1513 -1.4647 0.1373 -1.5334 0.1240 -1.6021 0.1114 -1.6707 0.0997 -1.7394 0.0888 -1.8081 0.0787 -1.8768 0.0694 -1.9454 0.0610 -2.0141 0.0533 -2.0828 0.0464 -2.1515 0.0401 -2.2202 0.0346 -2.2888 0.0297 -2.3575 0.0253 -2.4262 0.0215 -2.4949 0.0182 -2.5636 0.0153 -2.6322 0.0129 -2.7009 0.0107 -2.7696 0.0089 -2.8383 0.0074 -2.9070 0.0061 -2.9756 0.0050 -3.0443 0.0040 -3.1130 0.0033 -3.1817 0.0026 -3.2503 0.0021 -3.3190 0.0017 -3.3877 0.0014 -3.4564 0.0011 -3.5251 0.0008 -3.5937 0.0007 -3.6624 0.0005 -Geno2 2 -250 150 -0 -3 3 4 7 -1 0.4300 -2 0.5700 -Trait6 1 -250 150 -1 2 -0 --3.6825 0.0005 --3.6140 0.0006 --3.5455 0.0008 --3.4769 0.0010 --3.4084 0.0013 --3.3399 0.0016 --3.2713 0.0020 --3.2028 0.0025 --3.1343 0.0031 --3.0658 0.0038 --2.9972 0.0046 --2.9287 0.0057 --2.8602 0.0069 --2.7917 0.0084 --2.7231 0.0101 --2.6546 0.0121 --2.5861 0.0145 --2.5176 0.0172 --2.4490 0.0204 --2.3805 0.0240 --2.3120 0.0282 --2.2435 0.0329 --2.1749 0.0382 --2.1064 0.0441 --2.0379 0.0508 --1.9694 0.0582 --1.9008 0.0664 --1.8323 0.0753 --1.7638 0.0851 --1.6953 0.0957 --1.6267 0.1071 --1.5582 0.1193 --1.4897 0.1323 --1.4212 0.1461 --1.3526 0.1605 --1.2841 0.1755 --1.2156 0.1910 --1.1471 0.2069 --1.0785 0.2232 --1.0100 0.2396 --0.9415 0.2560 --0.8730 0.2722 --0.8044 0.2881 --0.7359 0.3036 --0.6674 0.3184 --0.5989 0.3324 --0.5303 0.3454 --0.4618 0.3572 --0.3933 0.3677 --0.3248 0.3768 --0.2562 0.3843 --0.1877 0.3901 --0.1192 0.3942 --0.0507 0.3965 -0.0179 0.3969 -0.0864 0.3955 -0.1549 0.3923 -0.2234 0.3873 -0.2920 0.3806 -0.3605 0.3722 -0.4290 0.3624 -0.4975 0.3512 -0.5661 0.3387 -0.6346 0.3252 -0.7031 0.3108 -0.7716 0.2956 -0.8402 0.2799 -0.9087 0.2638 -0.9772 0.2474 -1.0457 0.2310 -1.1143 0.2147 -1.1828 0.1986 -1.2513 0.1829 -1.3198 0.1676 -1.3884 0.1529 -1.4569 0.1388 -1.5254 0.1255 -1.5939 0.1129 -1.6625 0.1011 -1.7310 0.0901 -1.7995 0.0799 -1.8680 0.0706 -1.9366 0.0620 -2.0051 0.0542 -2.0736 0.0472 -2.1421 0.0409 -2.2107 0.0353 -2.2792 0.0303 -2.3477 0.0259 -2.4162 0.0221 -2.4848 0.0187 -2.5533 0.0157 -2.6218 0.0132 -2.6903 0.0110 -2.7589 0.0092 -2.8274 0.0076 -2.8959 0.0062 -2.9644 0.0051 -3.0330 0.0042 -3.1015 0.0034 -3.1700 0.0027 -Trait3 1 -250 150 -1 2 -1 7 --2.7825 0.0086 --2.7216 0.0101 --2.6608 0.0119 --2.5999 0.0140 --2.5390 0.0163 --2.4782 0.0190 --2.4173 0.0220 --2.3565 0.0254 --2.2956 0.0292 --2.2347 0.0335 --2.1739 0.0383 --2.1130 0.0435 --2.0521 0.0494 --1.9913 0.0558 --1.9304 0.0627 --1.8695 0.0704 --1.8087 0.0786 --1.7478 0.0875 --1.6870 0.0970 --1.6261 0.1072 --1.5652 0.1180 --1.5044 0.1295 --1.4435 0.1415 --1.3826 0.1541 --1.3218 0.1672 --1.2609 0.1807 --1.2000 0.1946 --1.1392 0.2088 --1.0783 0.2232 --1.0175 0.2378 --0.9566 0.2524 --0.8957 0.2668 --0.8349 0.2811 --0.7740 0.2951 --0.7131 0.3086 --0.6523 0.3216 --0.5914 0.3338 --0.5305 0.3453 --0.4697 0.3559 --0.4088 0.3654 --0.3480 0.3739 --0.2871 0.3811 --0.2262 0.3870 --0.1654 0.3916 --0.1045 0.3948 --0.0436 0.3966 -0.0172 0.3969 -0.0781 0.3958 -0.1389 0.3932 -0.1998 0.3892 -0.2607 0.3838 -0.3215 0.3772 -0.3824 0.3692 -0.4433 0.3602 -0.5041 0.3500 -0.5650 0.3389 -0.6259 0.3270 -0.6867 0.3143 -0.7476 0.3010 -0.8084 0.2872 -0.8693 0.2731 -0.9302 0.2587 -0.9910 0.2441 -1.0519 0.2295 -1.1128 0.2150 -1.1736 0.2007 -1.2345 0.1867 -1.2954 0.1730 -1.3562 0.1597 -1.4171 0.1469 -1.4779 0.1346 -1.5388 0.1229 -1.5997 0.1118 -1.6605 0.1014 -1.7214 0.0916 -1.7823 0.0824 -1.8431 0.0739 -1.9040 0.0660 -1.9649 0.0587 -2.0257 0.0521 -2.0866 0.0460 -2.1474 0.0405 -2.2083 0.0355 -2.2692 0.0310 -2.3300 0.0270 -2.3909 0.0234 -2.4518 0.0202 -2.5126 0.0174 -2.5735 0.0150 -2.6344 0.0128 -2.6952 0.0109 -2.7561 0.0092 -2.8169 0.0078 -2.8778 0.0066 -2.9387 0.0055 -2.9995 0.0046 -3.0604 0.0038 -3.1213 0.0032 -3.1821 0.0026 -3.2430 0.0022 -3.3039 0.0018 -Geno1 2 -250 150 -0 -1 6 -1 0.6650 -2 0.3350 -Trait2 1 -250 150 -1 5 -2 7 8 --3.0753 0.0037 --3.0078 0.0045 --2.9403 0.0055 --2.8728 0.0067 --2.8053 0.0081 --2.7378 0.0097 --2.6702 0.0116 --2.6027 0.0139 --2.5352 0.0165 --2.4677 0.0195 --2.4002 0.0229 --2.3327 0.0268 --2.2652 0.0313 --2.1977 0.0363 --2.1302 0.0420 --2.0627 0.0483 --1.9951 0.0553 --1.9276 0.0631 --1.8601 0.0716 --1.7926 0.0809 --1.7251 0.0910 --1.6576 0.1019 --1.5901 0.1135 --1.5226 0.1260 --1.4551 0.1392 --1.3876 0.1530 --1.3201 0.1675 --1.2525 0.1826 --1.1850 0.1981 --1.1175 0.2139 --1.0500 0.2300 --0.9825 0.2462 --0.9150 0.2623 --0.8475 0.2782 --0.7800 0.2937 --0.7125 0.3088 --0.6450 0.3231 --0.5775 0.3366 --0.5099 0.3490 --0.4424 0.3603 --0.3749 0.3703 --0.3074 0.3788 --0.2399 0.3858 --0.1724 0.3912 --0.1049 0.3948 --0.0374 0.3967 -0.0301 0.3968 -0.0976 0.3951 -0.1652 0.3916 -0.2327 0.3865 -0.3002 0.3796 -0.3677 0.3713 -0.4352 0.3614 -0.5027 0.3503 -0.5702 0.3379 -0.6377 0.3246 -0.7052 0.3103 -0.7727 0.2954 -0.8402 0.2799 -0.9078 0.2640 -0.9753 0.2479 -1.0428 0.2317 -1.1103 0.2156 -1.1778 0.1998 -1.2453 0.1842 -1.3128 0.1691 -1.3803 0.1546 -1.4478 0.1406 -1.5153 0.1274 -1.5829 0.1148 -1.6504 0.1031 -1.7179 0.0921 -1.7854 0.0819 -1.8529 0.0725 -1.9204 0.0640 -1.9879 0.0561 -2.0554 0.0490 -2.1229 0.0426 -2.1904 0.0369 -2.2579 0.0318 -2.3255 0.0273 -2.3930 0.0233 -2.4605 0.0198 -2.5280 0.0168 -2.5955 0.0141 -2.6630 0.0119 -2.7305 0.0099 -2.7980 0.0082 -2.8655 0.0068 -2.9330 0.0056 -3.0005 0.0046 -3.0681 0.0038 -3.1356 0.0031 -3.2031 0.0025 -3.2706 0.0020 -3.3381 0.0016 -3.4056 0.0013 -3.4731 0.0010 -3.5406 0.0008 -3.6081 0.0006 -3.6756 0.0005 -Trait4 1 -250 150 -3 2 4 6 -0 --3.2636 0.0025 --3.1926 0.0031 --3.1216 0.0039 --3.0506 0.0048 --2.9796 0.0059 --2.9086 0.0071 --2.8376 0.0086 --2.7666 0.0104 --2.6957 0.0125 --2.6247 0.0150 --2.5537 0.0178 --2.4827 0.0211 --2.4117 0.0248 --2.3407 0.0291 --2.2697 0.0340 --2.1987 0.0395 --2.1277 0.0456 --2.0567 0.0525 --1.9857 0.0601 --1.9148 0.0685 --1.8438 0.0777 --1.7728 0.0877 --1.7018 0.0986 --1.6308 0.1102 --1.5598 0.1226 --1.4888 0.1358 --1.4178 0.1497 --1.3468 0.1643 --1.2758 0.1794 --1.2049 0.1949 --1.1339 0.2108 --1.0629 0.2270 --0.9919 0.2432 --0.9209 0.2593 --0.8499 0.2751 --0.7789 0.2906 --0.7079 0.3055 --0.6369 0.3196 --0.5659 0.3328 --0.4949 0.3448 --0.4240 0.3557 --0.3530 0.3651 --0.2820 0.3730 --0.2110 0.3792 --0.1400 0.3838 --0.0690 0.3865 -0.0020 0.3874 -0.0730 0.3865 -0.1440 0.3838 -0.2150 0.3792 -0.2859 0.3730 -0.3569 0.3651 -0.4279 0.3557 -0.4989 0.3448 -0.5699 0.3328 -0.6409 0.3196 -0.7119 0.3055 -0.7829 0.2906 -0.8539 0.2752 -0.9249 0.2593 -0.9959 0.2432 -1.0668 0.2270 -1.1378 0.2109 -1.2088 0.1950 -1.2798 0.1794 -1.3508 0.1643 -1.4218 0.1498 -1.4928 0.1358 -1.5638 0.1227 -1.6348 0.1102 -1.7058 0.0986 -1.7767 0.0877 -1.8477 0.0777 -1.9187 0.0685 -1.9897 0.0601 -2.0607 0.0525 -2.1317 0.0456 -2.2027 0.0395 -2.2737 0.0340 -2.3447 0.0291 -2.4157 0.0248 -2.4867 0.0211 -2.5576 0.0178 -2.6286 0.0150 -2.6996 0.0125 -2.7706 0.0104 -2.8416 0.0086 -2.9126 0.0071 -2.9836 0.0059 -3.0546 0.0048 -3.1256 0.0039 -3.1966 0.0031 -3.2675 0.0025 -3.3385 0.0020 -3.4095 0.0016 -3.4805 0.0013 -3.5515 0.0010 -3.6225 0.0008 -3.6935 0.0006 -3.7645 0.0005 -3.8355 0.0004 -Trait1 1 -250 150 -1 6 -0 --3.6875 0.0005 --3.6097 0.0006 --3.5318 0.0008 --3.4540 0.0011 --3.3761 0.0014 --3.2983 0.0018 --3.2204 0.0024 --3.1425 0.0030 --3.0647 0.0038 --2.9868 0.0048 --2.9090 0.0061 --2.8311 0.0076 --2.7533 0.0094 --2.6754 0.0115 --2.5976 0.0141 --2.5197 0.0172 --2.4418 0.0208 --2.3640 0.0251 --2.2861 0.0300 --2.2083 0.0356 --2.1304 0.0421 --2.0526 0.0495 --1.9747 0.0577 --1.8969 0.0670 --1.8190 0.0773 --1.7411 0.0887 --1.6633 0.1011 --1.5854 0.1145 --1.5076 0.1290 --1.4297 0.1444 --1.3519 0.1608 --1.2740 0.1778 --1.1962 0.1956 --1.1183 0.2138 --1.0404 0.2323 --0.9626 0.2509 --0.8847 0.2694 --0.8069 0.2875 --0.7290 0.3050 --0.6512 0.3216 --0.5733 0.3371 --0.4955 0.3513 --0.4176 0.3639 --0.3397 0.3746 --0.2619 0.3834 --0.1840 0.3900 --0.1062 0.3944 --0.0283 0.3964 -0.0495 0.3961 -0.1274 0.3934 -0.2052 0.3884 -0.2831 0.3812 -0.3610 0.3719 -0.4388 0.3606 -0.5167 0.3476 -0.5945 0.3330 -0.6724 0.3172 -0.7502 0.3003 -0.8281 0.2826 -0.9059 0.2644 -0.9838 0.2458 -1.0617 0.2272 -1.1395 0.2088 -1.2174 0.1907 -1.2952 0.1731 -1.3731 0.1562 -1.4509 0.1401 -1.5288 0.1250 -1.6066 0.1108 -1.6845 0.0976 -1.7624 0.0855 -1.8402 0.0744 -1.9181 0.0644 -1.9959 0.0554 -2.0738 0.0474 -2.1516 0.0403 -2.2295 0.0340 -2.3073 0.0286 -2.3852 0.0238 -2.4631 0.0198 -2.5409 0.0163 -2.6188 0.0134 -2.6966 0.0109 -2.7745 0.0088 -2.8523 0.0071 -2.9302 0.0057 -3.0080 0.0045 -3.0859 0.0036 -3.1638 0.0028 -3.2416 0.0022 -3.3195 0.0017 -3.3973 0.0013 -3.4752 0.0010 -3.5530 0.0008 -3.6309 0.0006 -3.7087 0.0004 -3.7866 0.0003 -3.8645 0.0002 -3.9423 0.0002 -4.0202 0.0001 -4.0980 0.0001 diff --git a/sourcecodes/data/example2/hQGnlevels.txt b/sourcecodes/data/example2/hQGnlevels.txt deleted file mode 100644 index 32457058..00000000 --- a/sourcecodes/data/example2/hQGnlevels.txt +++ /dev/null @@ -1,4 +0,0 @@ -Geno1 1 2 -Geno2 1 2 - - diff --git a/sourcecodes/data/example2/hQGnnode.txt b/sourcecodes/data/example2/hQGnnode.txt deleted file mode 100644 index 45a4fb75..00000000 --- a/sourcecodes/data/example2/hQGnnode.txt +++ /dev/null @@ -1 +0,0 @@ -8 diff --git a/sourcecodes/data/example2/hQGnrows.txt b/sourcecodes/data/example2/hQGnrows.txt deleted file mode 100644 index 3bc92d44..00000000 --- a/sourcecodes/data/example2/hQGnrows.txt +++ /dev/null @@ -1 +0,0 @@ -201 diff --git a/sourcecodes/data/example2/hQGparameters.txt b/sourcecodes/data/example2/hQGparameters.txt deleted file mode 100644 index 4cffac4a..00000000 --- a/sourcecodes/data/example2/hQGparameters.txt +++ /dev/null @@ -1,34 +0,0 @@ -Geno1 -Discrete node with 2 states -1 0.6650 -2 0.3350 - -Geno2 -Discrete node with 2 states -1 0.4300 -2 0.5700 - -Trait1 -Continuous node --0.0239 0.6720 - -Trait2 -Continuous node -0.0386 0.8009 - -Trait3 -Continuous node -0.0687 1.0419 - -Trait4 -Continuous node --0.0081 1.0133 - -Trait5 -Continuous node -0.0089 0.3181 - -Trait6 -Continuous node --0.1143 0.9091 - diff --git a/sourcecodes/data/example2/hQGparent.txt b/sourcecodes/data/example2/hQGparent.txt deleted file mode 100644 index b8626c4c..00000000 --- a/sourcecodes/data/example2/hQGparent.txt +++ /dev/null @@ -1 +0,0 @@ -4 diff --git a/sourcecodes/data/example2/hQGstructure_old.txt b/sourcecodes/data/example2/hQGstructure_old.txt deleted file mode 100644 index f979ea93..00000000 --- a/sourcecodes/data/example2/hQGstructure_old.txt +++ /dev/null @@ -1,7 +0,0 @@ -Geno1 0.6650 0.3350 -Trait2 0.0037 0.0045 0.0055 0.0067 0.0081 0.0097 0.0116 0.0139 0.0165 0.0195 0.0229 0.0268 0.0313 0.0363 0.0420 0.0483 0.0553 0.0631 0.0716 0.0809 0.0910 0.1019 0.1135 0.1260 0.1392 0.1530 0.1675 0.1826 0.1981 0.2139 0.2300 0.2462 0.2623 0.2782 0.2937 0.3088 0.3231 0.3366 0.3490 0.3603 0.3703 0.3788 0.3858 0.3912 0.3948 0.3967 0.3968 0.3951 0.3916 0.3865 0.3796 0.3713 0.3614 0.3503 0.3379 0.3246 0.3103 0.2954 0.2799 0.2640 0.2479 0.2317 0.2156 0.1998 0.1842 0.1691 0.1546 0.1406 0.1274 0.1148 0.1031 0.0921 0.0819 0.0725 0.0640 0.0561 0.0490 0.0426 0.0369 0.0318 0.0273 0.0233 0.0198 0.0168 0.0141 0.0119 0.0099 0.0082 0.0068 0.0056 0.0046 0.0038 0.0031 0.0025 0.0020 0.0016 0.0013 0.0010 0.0008 0.0006 0.0005 -Geno2 0.4300 0.5700 -Trait3 0.0086 0.0101 0.0119 0.0140 0.0163 0.0190 0.0220 0.0254 0.0292 0.0335 0.0383 0.0435 0.0494 0.0558 0.0627 0.0704 0.0786 0.0875 0.0970 0.1072 0.1180 0.1295 0.1415 0.1541 0.1672 0.1807 0.1946 0.2088 0.2232 0.2378 0.2524 0.2668 0.2811 0.2951 0.3086 0.3216 0.3338 0.3453 0.3559 0.3654 0.3739 0.3811 0.3870 0.3916 0.3948 0.3966 0.3969 0.3958 0.3932 0.3892 0.3838 0.3772 0.3692 0.3602 0.3500 0.3389 0.3270 0.3143 0.3010 0.2872 0.2731 0.2587 0.2441 0.2295 0.2150 0.2007 0.1867 0.1730 0.1597 0.1469 0.1346 0.1229 0.1118 0.1014 0.0916 0.0824 0.0739 0.0660 0.0587 0.0521 0.0460 0.0405 0.0355 0.0310 0.0270 0.0234 0.0202 0.0174 0.0150 0.0128 0.0109 0.0092 0.0078 0.0066 0.0055 0.0046 0.0038 0.0032 0.0026 0.0022 0.0018 -Trait4 0.0025 0.0031 0.0039 0.0048 0.0059 0.0071 0.0086 0.0104 0.0125 0.0150 0.0178 0.0211 0.0248 0.0291 0.0340 0.0395 0.0456 0.0525 0.0601 0.0685 0.0777 0.0877 0.0986 0.1102 0.1226 0.1358 0.1497 0.1643 0.1794 0.1949 0.2108 0.2270 0.2432 0.2593 0.2751 0.2906 0.3055 0.3196 0.3328 0.3448 0.3557 0.3651 0.3730 0.3792 0.3838 0.3865 0.3874 0.3865 0.3838 0.3792 0.3730 0.3651 0.3557 0.3448 0.3328 0.3196 0.3055 0.2906 0.2752 0.2593 0.2432 0.2270 0.2109 0.1950 0.1794 0.1643 0.1498 0.1358 0.1227 0.1102 0.0986 0.0877 0.0777 0.0685 0.0601 0.0525 0.0456 0.0395 0.0340 0.0291 0.0248 0.0211 0.0178 0.0150 0.0125 0.0104 0.0086 0.0071 0.0059 0.0048 0.0039 0.0031 0.0025 0.0020 0.0016 0.0013 0.0010 0.0008 0.0006 0.0005 0.0004 -Trait6 0.0005 0.0006 0.0008 0.0010 0.0013 0.0016 0.0020 0.0025 0.0031 0.0038 0.0046 0.0057 0.0069 0.0084 0.0101 0.0121 0.0145 0.0172 0.0204 0.0240 0.0282 0.0329 0.0382 0.0441 0.0508 0.0582 0.0664 0.0753 0.0851 0.0957 0.1071 0.1193 0.1323 0.1461 0.1605 0.1755 0.1910 0.2069 0.2232 0.2396 0.2560 0.2722 0.2881 0.3036 0.3184 0.3324 0.3454 0.3572 0.3677 0.3768 0.3843 0.3901 0.3942 0.3965 0.3969 0.3955 0.3923 0.3873 0.3806 0.3722 0.3624 0.3512 0.3387 0.3252 0.3108 0.2956 0.2799 0.2638 0.2474 0.2310 0.2147 0.1986 0.1829 0.1676 0.1529 0.1388 0.1255 0.1129 0.1011 0.0901 0.0799 0.0706 0.0620 0.0542 0.0472 0.0409 0.0353 0.0303 0.0259 0.0221 0.0187 0.0157 0.0132 0.0110 0.0092 0.0076 0.0062 0.0051 0.0042 0.0034 0.0027 -Trait1 0.0005 0.0006 0.0008 0.0011 0.0014 0.0018 0.0024 0.0030 0.0038 0.0048 0.0061 0.0076 0.0094 0.0115 0.0141 0.0172 0.0208 0.0251 0.0300 0.0356 0.0421 0.0495 0.0577 0.0670 0.0773 0.0887 0.1011 0.1145 0.1290 0.1444 0.1608 0.1778 0.1956 0.2138 0.2323 0.2509 0.2694 0.2875 0.3050 0.3216 0.3371 0.3513 0.3639 0.3746 0.3834 0.3900 0.3944 0.3964 0.3961 0.3934 0.3884 0.3812 0.3719 0.3606 0.3476 0.3330 0.3172 0.3003 0.2826 0.2644 0.2458 0.2272 0.2088 0.1907 0.1731 0.1562 0.1401 0.1250 0.1108 0.0976 0.0855 0.0744 0.0644 0.0554 0.0474 0.0403 0.0340 0.0286 0.0238 0.0198 0.0163 0.0134 0.0109 0.0088 0.0071 0.0057 0.0045 0.0036 0.0028 0.0022 0.0017 0.0013 0.0010 0.0008 0.0006 0.0004 0.0003 0.0002 0.0002 0.0001 0.0001 diff --git a/sourcecodes/data/example2/hQGthr.txt b/sourcecodes/data/example2/hQGthr.txt deleted file mode 100644 index 2eb3c4fe..00000000 --- a/sourcecodes/data/example2/hQGthr.txt +++ /dev/null @@ -1 +0,0 @@ -0.5 diff --git a/sourcecodes/data/example2/hQGtier.txt b/sourcecodes/data/example2/hQGtier.txt deleted file mode 100644 index bc94239b..00000000 --- a/sourcecodes/data/example2/hQGtier.txt +++ /dev/null @@ -1 +0,0 @@ -3,Tier1,0,Tier2,0,Tier3,0, \ No newline at end of file diff --git a/sourcecodes/data/example2/hQGtype.txt b/sourcecodes/data/example2/hQGtype.txt deleted file mode 100644 index 285a68af..00000000 --- a/sourcecodes/data/example2/hQGtype.txt +++ /dev/null @@ -1,2 +0,0 @@ -Geno1 Geno2 Trait1 Trait2 Trait3 Trait4 Trait5 Trait6 -2 2 1 1 1 1 1 1 diff --git a/sourcecodes/data/example2/hQGwhite.txt b/sourcecodes/data/example2/hQGwhite.txt deleted file mode 100644 index 83e81b8b..00000000 --- a/sourcecodes/data/example2/hQGwhite.txt +++ /dev/null @@ -1 +0,0 @@ -From To diff --git a/sourcecodes/data/example2/old/hQGrun_initialstructure.sh b/sourcecodes/data/example2/old/hQGrun_initialstructure.sh deleted file mode 100644 index 7d4cbfea..00000000 --- a/sourcecodes/data/example2/old/hQGrun_initialstructure.sh +++ /dev/null @@ -1,38 +0,0 @@ -#!/bin/sh -# script for execution of deployed applications -# -# Sets up the MCR environment for the current $ARCH and executes -# the specified command. -# -exe_name=$0 -exe_dir=`dirname "$0"` -echo "------------------------------------------" -if [ "x$1" = "x" ]; then - echo Usage: - echo $0 \<deployedMCRroot\> args -else - echo Setting up environment variables - MCRROOT="$1" - echo --- - LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; - MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; - XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; - export LD_LIBRARY_PATH; - export XAPPLRESDIR; - echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; - shift 1 - args= - while [ $# -gt 0 ]; do - token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank - args="${args} ${token}" - shift - done - "${exe_dir}"/initialstructure hQG -fi -exit diff --git a/sourcecodes/data/example2/standardized_data.txt b/sourcecodes/data/example2/standardized_data.txt deleted file mode 100644 index 743e8b02..00000000 --- a/sourcecodes/data/example2/standardized_data.txt +++ /dev/null @@ -1,201 +0,0 @@ -Trait5 Geno2 Trait6 Trait3 Geno1 Trait2 Trait4 Trait1 -1.8453 2 -0.70749 -1.3361 2 1.5443 -0.43784 0.72827 -0.9605 1 0.85158 1.5164 1 -1.1632 1.0263 -0.11408 --0.63336 1 0.53936 1.1602 1 -0.74229 1.4011 -1.541 -1.3355 2 -1.7216 -0.76715 1 0.12195 -0.66179 0.099211 -0.36111 2 -0.74876 -0.98283 1 -2.0753 -1.2335 -0.99244 --1.177 1 0.51257 0.84261 1 0.065663 1.2658 -0.64654 -0.076305 1 1.5888 1.7606 1 -0.66331 1.4736 0.39057 --0.53841 2 0.11031 -1.5038 1 0.23456 -0.060179 0.14097 --0.59968 1 0.48834 1.0431 1 -0.59377 0.22579 -0.99932 -0.37839 1 1.293 0.49142 1 -1.2855 0.37537 0.50786 --0.98262 1 1.6051 0.57702 2 0.44497 0.92494 1.9396 --0.32154 1 1.0249 0.77512 1 -0.62075 0.32547 1.8129 -0.094471 1 1.0318 1.5671 2 -0.60413 0.75183 -1.4864 --0.2677 2 -1.3762 -0.039045 2 0.61004 -0.20296 -0.34315 -1.45 2 0.22686 -0.18131 1 -0.5462 -0.61255 -0.83409 --0.94296 2 -1.0223 -1.1896 1 -0.4021 -1.2644 -1.2822 --0.65504 2 -2.6825 -1.035 1 0.25776 -1.4615 0.84597 -1.3635 1 1.5647 0.59499 2 1.372 1.0621 0.74498 -0.60321 1 0.68692 1.4714 2 0.81867 1.711 0.90082 --0.5142 2 -1.0962 -1.5522 1 -0.04535 -1.2401 -0.62273 --1.2303 1 0.82027 1.0532 2 -0.12811 1.344 0.60516 -0.84008 2 -0.7159 -0.44987 1 -0.56344 -1.5572 1.0854 -0.47761 1 1.5622 1.2168 1 -0.30596 1.1251 -1.3723 --1.3546 2 -0.7484 -0.096654 1 0.03293 0.23078 0.81604 --0.32954 2 -1.6183 -0.57119 1 -0.9399 -1.5734 -0.76341 -0.57841 1 0.24378 0.681 1 -0.7778 1.305 0.77773 -0.11524 2 -0.85367 0.35424 2 2.3096 0.75697 1.7572 -1.1463 2 0.0096586 -0.25741 1 -0.52081 -1.5513 0.64513 --1.3926 2 -0.88863 -0.68795 2 0.0060478 -0.43763 0.97179 --0.34841 1 1.0004 0.23941 1 -0.83161 0.87503 -0.88918 -0.79176 1 0.59541 1.0092 1 -1.9591 0.77295 0.31259 --1.7691 2 0.055429 -1.1837 2 1.1172 -0.091192 1.3241 -0.23812 2 -0.13588 -0.98943 1 -0.041159 -0.43704 -0.39754 -1.4262 1 0.46298 1.327 1 0.15808 1.1741 -0.073642 -1.3584 1 1.5511 0.49802 1 -0.96618 -0.037384 0.26987 --0.45407 2 -0.11918 -0.20984 1 -0.84764 0.68704 0.15725 -1.3502 1 1.1228 1.7003 1 -0.34181 1.3601 0.19859 -0.51265 2 0.059243 -0.61724 1 -1.2675 -1.2719 -1.5483 -1.6144 2 -1.6767 -0.4403 2 -0.7614 0.046076 -0.6741 --0.99883 2 -0.76648 0.33667 2 0.97148 -1.1389 -0.11754 -0.24789 1 0.4729 1.0484 1 -0.62124 0.34555 -0.08916 -1.6957 2 0.014711 -1.3474 1 -0.026706 -1.4606 -1.4336 --0.54533 1 0.88108 1.3793 1 -0.29202 1.3706 -1.1708 --1.7381 1 0.16189 0.96739 1 -0.77438 0.96572 1.2346 --0.844 2 -1.0713 -0.50552 2 1.1809 -0.13536 3.098 --1.8946 1 0.83747 0.55294 1 0.21042 0.78685 -0.41553 --1.2313 1 0.77672 1.7131 1 -0.38666 1.694 -0.79692 --0.7674 2 -1.151 -0.091205 1 0.9644 -0.57897 0.21389 -0.72057 2 -0.34897 -0.95934 1 -1.3832 -0.57841 -0.10718 -1.2095 2 0.5788 -0.77644 2 0.86817 -0.56945 0.13481 -0.09126 1 1.0274 0.59902 1 0.094442 0.30723 1.2562 --1.7398 1 0.67041 0.82202 1 -0.30164 0.94827 -0.94259 --0.66818 1 0.49087 1.2694 1 -0.18615 0.78217 -1.3239 --0.2258 2 -1.4193 -1.44 1 -1.5421 -1.6216 -0.34851 -1.4939 2 0.12307 -0.97417 2 -1.9058 -1.6405 -2.6645 -0.59683 2 -0.27561 -1.5921 1 -0.012339 -1.033 0.22517 -0.32502 1 1.8115 0.59888 1 -0.78178 0.37072 -1.5597 -0.33627 2 -0.54037 -0.092937 1 -0.23801 -0.28432 0.25627 --0.71947 2 -0.96292 -0.87226 2 1.0454 -1.1866 -1.1152 -0.7723 2 -0.74389 -0.31293 2 0.56738 -1.597 0.21919 -1.1117 1 0.22881 0.53378 1 0.28362 0.62928 -0.56731 --0.37072 1 1.1896 1.2033 2 1.7889 1.9867 -1.1364 -1.9537 2 -1.2797 -1.1399 1 -0.45995 -1.6282 -0.33873 --1.1043 1 1.0871 2.3039 2 -0.27611 0.615 0.27237 --1.3202 1 0.86019 1.2914 2 0.27461 0.94779 -0.83546 --0.46478 1 1.29 0.43419 1 0.6874 1.6104 -0.36581 --1.1858 2 -1.2069 -0.56475 1 0.18024 -0.54017 0.23717 -0.32802 1 0.87458 1.8613 2 0.40544 1.1088 1.7576 -1.1735 2 -0.66747 -1.6202 1 0.53589 -0.9149 0.45212 --1.16 1 1.0838 0.61868 2 0.72867 1.3378 0.2647 -1.462 2 0.19509 -1.4192 1 0.56635 -0.85302 0.33371 -1.0695 1 0.21919 1.322 2 1.3441 1.1727 0.76002 --0.22703 1 1.1363 0.54703 1 -0.48891 1.2236 -0.91644 -1.3458 2 -0.6068 -1.7825 1 -0.68775 -0.89217 0.99689 --0.091249 1 0.68469 0.60839 1 -0.6527 0.58896 -0.24017 -0.67203 1 0.72395 1.1051 1 -1.4197 0.29802 0.188 -0.34537 1 1.2845 1.4258 1 -0.6173 1.0233 -0.24233 --1.0761 2 -1.2815 -0.94371 1 -1.4633 -0.69107 -0.8715 --0.20711 1 1.0174 0.69566 1 -0.58432 0.15352 -0.49345 -0.59929 1 1.5069 1.8419 1 -1.4583 -0.031663 0.0055113 --0.11492 1 1.2367 1.2191 1 -0.51421 1.1523 1.884 -1.2751 2 -0.52411 -0.64346 2 2.0614 -0.0023541 -0.77991 -0.90981 1 1.1284 1.2152 2 2.6756 1.2409 -0.0084945 --1.9542 2 -1.221 -1.4163 2 1.2826 -0.010965 1.0953 -1.7193 1 0.30492 1.2836 2 0.61499 0.56464 0.15443 --0.53199 1 0.23732 0.77552 1 -1.2032 -0.66655 0.09844 -0.036699 2 -1.0483 -1.779 1 0.3525 -0.60395 0.30022 --0.64389 1 -0.082056 0.48348 1 -0.86546 -0.4081 -0.099303 -0.7892 2 0.063117 -0.73251 1 -0.64062 -0.4066 0.12435 --0.92679 2 -1.4966 0.012855 1 0.79099 -0.55856 0.19256 -0.75147 1 0.0035339 0.026413 1 -0.50794 0.29651 -0.27764 -0.21172 2 -1.3492 -0.47335 1 0.23233 -0.70213 -1.8621 --0.97409 2 -0.629 -0.4728 1 0.091744 -0.086481 -0.49515 --1.0464 2 -1.6692 -0.8497 2 1.5077 0.095689 1.3063 --0.078054 1 1.7703 0.87897 2 1.6091 1.3305 -0.65192 -1.6149 2 -0.75709 -0.63085 1 -0.77532 -2.2636 -0.59675 --1.1678 1 0.0899 0.58095 2 -0.22151 0.26068 0.51619 --0.098842 2 -0.30237 -0.04093 1 -1.2385 -0.37569 -1.8217 --0.55001 2 -1.0301 -1.7087 2 2.6454 -1.328 0.34954 -1.0482 2 -0.26461 -1.3201 2 1.68 -0.0041651 -0.12113 -0.5008 2 -0.85959 -0.66514 1 -1.6141 0.29161 -0.95504 -0.309 1 1.0744 1.269 1 -0.96467 1.5905 -1.42 --0.03887 1 1.0667 1.0095 1 -0.089407 0.99929 1.152 --0.50172 2 -0.99479 -0.54327 2 -0.16208 -1.0551 0.47476 --0.094959 1 2.17 1.7212 2 0.51568 0.53768 -1.2639 --0.5209 2 -1.431 -0.70798 1 -0.4217 0.23091 0.57769 -0.6976 2 -1.2512 -0.50443 1 0.40922 -1.2722 -0.22881 --0.15737 2 -1.3037 -1.2446 1 -0.25 -1.3128 -0.48267 -1.7004 2 -0.093222 0.18072 1 -0.77286 -1.1751 0.70356 --0.34711 2 -0.40996 -0.38877 1 -0.74126 -0.076517 0.71538 -0.63301 2 -1.3066 -1.061 1 -0.020245 -0.47474 0.22151 -0.45593 1 0.98475 1.1245 1 -1.5284 0.87162 -1.1116 --0.074398 2 0.086143 -0.71909 1 -0.72312 -0.58633 -0.11884 -0.5737 1 1.3999 0.41267 1 0.14453 0.30696 0.39177 -0.50652 2 -0.76797 -0.93352 1 -0.537 -0.41761 0.072615 --1.6019 2 0.65979 -0.97526 1 0.28122 -0.88937 0.46709 -0.74414 1 1.6353 1.382 1 0.099487 1.2686 1.3095 --1.3504 2 -1.1309 -0.53372 2 0.13853 -1.3604 1.3258 --0.32328 2 -1.4115 -0.55521 1 -0.39333 -0.7941 1.0533 --0.74323 1 1.7072 0.49329 1 -0.87786 0.48373 -1.3411 -0.8876 2 -1.0691 -0.47533 1 -0.65919 -1.2867 1.3563 --0.26121 1 1.3665 1.3315 2 0.59812 1.5342 -0.51186 --0.52176 1 1.5091 0.71759 1 -0.79433 0.67907 -0.77268 --0.51351 2 -0.99866 -0.96005 2 -0.064251 -0.82275 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-0.48699 -0.10105 -1 1 -1.0408 -0.99866 2.0799 1.1634 0.092516 0.30401 -1 1 -0.87125 -0.88987 1.0278 1.0157 -0.23725 1.2377 -1 2 -0.020591 -0.03398 -0.024834 -1.3588 -0.045961 -0.89693 -1 1 0.9213 -0.57037 1.044 1.2994 0.046517 0.66563 -1 2 -0.87288 -0.96382 -0.704 -1.2184 0.046903 -0.30008 -1 2 0.77586 -0.34168 -0.09867 -0.37744 -0.24309 -0.13441 -2 1 0.19521 0.67595 1.4533 1.5115 0.19553 0.79596 -2 1 -1.3273 1.0891 1.2544 0.98928 0.045725 0.54963 -2 2 0.59176 0.65915 -0.84578 -0.080229 -0.26961 0.24045 -1 2 -0.66958 -1.042 -1.2138 -0.7612 -0.22775 -0.40062 -1 2 1.1154 -0.57069 -0.6592 -2.1961 -0.013175 0.46007 -1 2 -0.5254 0.0031225 -0.77758 0.8169 0.13224 -0.65572 -2 1 0.24551 1.5078 0.10719 1.1454 0.70578 0.59051 -1 2 0.29875 -0.11455 -1.0497 -0.77881 0.080708 -0.48337 -1 1 -0.1047 0.011628 1.2504 0.41776 -0.20102 1.2252 -1 2 0.44808 -0.8165 -0.080134 -0.49618 0.051011 -0.71722 -2 1 2.0365 1.5592 1.3257 1.2472 -0.47899 0.10943 -1 1 -0.16507 -0.66011 0.98739 0.58519 0.245 -0.43277 -1 2 -0.028366 -0.16961 -1.3266 0.14248 -0.24634 -1.1154 -2 1 0.92842 1.8842 1.3169 1.0358 -0.20988 0.88021 -2 2 0.33158 0.32463 -0.50924 0.40233 0.54391 -0.24309 -1 2 1.2555 0.1928 -0.487 0.048779 -0.23483 -1.477 -2 1 0.75021 0.85943 -0.2323 0.10748 -0.68906 0.84276 -2 2 0.6297 1.7397 -1.6136 -0.43268 -0.21442 -0.77462 -2 1 0.53168 1.0807 1.0853 0.62304 0.44036 0.48087 -1 2 -0.31256 -0.69771 -0.88556 -1.333 0.038614 -1.5744 -1 2 -0.039695 -0.52447 0.91401 -0.93272 0.53434 -0.080746 -2 1 -0.16596 0.56821 0.76008 0.45442 0.10286 0.6539 -1 2 -0.4331 -0.89669 -1.3097 -1.2157 0.1065 -0.8512 -1 2 -0.34708 -0.51457 -1.012 -0.39437 -0.55374 -1.144 -2 2 0.024082 0.7128 -1.3702 -1.4492 -0.10228 -0.59071 -1 2 -0.0037109 -0.68845 -0.649 -0.91581 0.066805 -0.98583 -2 1 0.68706 0.067424 0.87139 0.7938 -0.099645 1.529 -2 2 -0.31183 0.57814 -0.80815 -0.66724 -0.31919 -0.61319 -1 2 -0.11153 -0.6246 -0.27979 -0.18363 0.83639 0.014919 -2 2 0.20406 1.5838 -0.96334 -1.1228 -0.17808 -1.2123 -2 2 -0.1134 0.63358 -0.53321 -0.84276 -0.27657 -0.36992 -1 2 0.25517 0.67006 -0.1349 0.18275 0.40982 -0.62487 -1 1 -1.2684 0.31042 0.91155 0.66143 0.2483 -0.12434 -1 1 -0.97542 -0.85419 0.7663 0.16362 -0.18737 0.67266 -1 2 -0.043882 -0.62746 -0.82816 -0.40626 -0.051048 -0.61297 -1 1 0.59605 -0.45852 1.2962 0.78156 -0.48154 0.17778 -2 2 -0.06266 1.1144 -0.80524 -0.3189 -0.16038 -0.96372 -1 2 -1.1821 1.0798 -1.3407 -0.52643 0.12458 -0.7871 -2 2 0.59446 0.89186 -0.97856 -0.64658 0.2712 -1.5538 -1 2 0.15067 0.41827 -1.0487 -1.0551 0.19143 -1.4537 -1 2 -1.073 0.022587 -1.7088 -1.3777 0.1964 -0.84025 -2 1 0.20928 1.8026 1.2073 2.78 0.15131 0.3448 -1 2 -1.1317 -0.6359 -0.70457 -1.676 -0.22886 -0.58769 -1 1 -0.039428 -0.58746 0.56 0.7896 -0.052581 0.99511 -1 2 0.55023 -0.20403 0.138 -0.70518 0.66927 -0.28861 -2 2 0.57423 1.1886 0.092876 0.025677 -0.41099 -1.2858 -2 2 -0.14179 1.5827 -0.94328 0.7703 -0.43967 -0.50448 -2 2 0.14666 1.0492 -0.0030259 -0.62418 -0.087515 -0.048386 diff --git a/sourcecodes/data/example2_test/exAk.txt b/sourcecodes/data/example2_test/exAk.txt deleted file mode 100644 index 29d6383b..00000000 --- a/sourcecodes/data/example2_test/exAk.txt +++ /dev/null @@ -1 +0,0 @@ -100 diff --git a/sourcecodes/data/example2_test/exAparent.txt b/sourcecodes/data/example2_test/exAparent.txt deleted file mode 100644 index b8626c4c..00000000 --- a/sourcecodes/data/example2_test/exAparent.txt +++ /dev/null @@ -1 +0,0 @@ -4 diff --git a/sourcecodes/data/example2_test/exAstructure_input.txt b/sourcecodes/data/example2_test/exAstructure_input.txt deleted file mode 100644 index 410c0fa4..00000000 --- a/sourcecodes/data/example2_test/exAstructure_input.txt +++ /dev/null @@ -1,9 +0,0 @@ -Geno1 Geno2 Trait1 Trait2 Trait3 Trait4 Trait5 Trait6 -0 0 0 1 0 0 0 0 -0 0 0 0 1 1 0 1 -0 0 0 0 0 0 0 0 -0 0 1 0 0 1 0 0 -0 0 0 0 0 1 0 0 -0 0 0 0 0 0 0 0 -0 0 0 0 0 0 0 0 -0 0 0 0 0 0 0 0 diff --git a/sourcecodes/data/example2_test/exAstructure_input_temp.txt b/sourcecodes/data/example2_test/exAstructure_input_temp.txt deleted file mode 100644 index 27bddc96..00000000 --- a/sourcecodes/data/example2_test/exAstructure_input_temp.txt +++ /dev/null @@ -1,9 +0,0 @@ -Geno1 Geno2 Trait1 Trait2 Trait3 Trait4 Trait5 Trait6 -0.000000 0.030654 0.000000 1.000000 0.000000 0.000000 0.350069 0.000000 -0.030654 0.000000 0.049399 0.000000 1.000000 1.000000 0.000000 1.000000 -0.000000 0.000000 0.000000 0.000000 0.025163 0.000000 0.123845 0.000000 -0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.053585 0.000000 -0.000000 0.000000 0.013273 0.108604 0.000000 1.000000 0.010570 0.391609 -0.000000 0.000000 0.013713 0.000000 0.000000 0.000000 0.011282 0.026127 -0.000000 0.000000 0.028672 0.000000 0.000000 0.000000 0.000000 0.137567 -0.000000 0.000000 0.136004 0.056792 0.457123 0.029978 0.069699 0.000000 diff --git a/sourcecodes/data/example2_test/exAthr.txt b/sourcecodes/data/example2_test/exAthr.txt deleted file mode 100644 index 2eb3c4fe..00000000 --- a/sourcecodes/data/example2_test/exAthr.txt +++ /dev/null @@ -1 +0,0 @@ -0.5 diff --git a/sourcecodes/data/example2_test/exAwhite.txt b/sourcecodes/data/example2_test/exAwhite.txt deleted file mode 100644 index 83e81b8b..00000000 --- a/sourcecodes/data/example2_test/exAwhite.txt +++ /dev/null @@ -1 +0,0 @@ -From To diff --git a/sourcecodes/data/example_chl/old/bWRrun_evidencemodified.sh b/sourcecodes/data/example_chl/old/bWRrun_evidencemodified.sh deleted file mode 100644 index 763a268b..00000000 --- a/sourcecodes/data/example_chl/old/bWRrun_evidencemodified.sh +++ /dev/null @@ -1,38 +0,0 @@ -#!/bin/sh -# script for execution of deployed applications -# -# Sets up the MCR environment for the current $ARCH and executes -# the specified command. -# -exe_name=$0 -exe_dir=`dirname "$0"` -echo "------------------------------------------" -if [ "x$1" = "x" ]; then - echo Usage: - echo $0 \<deployedMCRroot\> args -else - echo Setting up environment variables - MCRROOT="$1" - echo --- - LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; - MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; - XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; - export LD_LIBRARY_PATH; - export XAPPLRESDIR; - echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; - shift 1 - args= - while [ $# -gt 0 ]; do - token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank - args="${args} ${token}" - shift - done - "${exe_dir}"/evidencemodified bWR -fi -exit diff --git a/sourcecodes/data/example_chl/old/bWRrun_initialstructure.sh b/sourcecodes/data/example_chl/old/bWRrun_initialstructure.sh deleted file mode 100644 index 3725f758..00000000 --- a/sourcecodes/data/example_chl/old/bWRrun_initialstructure.sh +++ /dev/null @@ -1,38 +0,0 @@ -#!/bin/sh -# script for execution of deployed applications -# -# Sets up the MCR environment for the current $ARCH and executes -# the specified command. -# -exe_name=$0 -exe_dir=`dirname "$0"` -echo "------------------------------------------" -if [ "x$1" = "x" ]; then - echo Usage: - echo $0 \<deployedMCRroot\> args -else - echo Setting up environment variables - MCRROOT="$1" - echo --- - LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; - MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; - XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; - export LD_LIBRARY_PATH; - export XAPPLRESDIR; - echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; - shift 1 - args= - while [ $# -gt 0 ]; do - token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank - args="${args} ${token}" - shift - done - "${exe_dir}"/initialstructure bWR -fi -exit diff --git a/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input.txt b/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input.txt deleted file mode 100644 index cf674ffd..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input.txt +++ /dev/null @@ -1,44 +0,0 @@ -Ctrq3 MAS Neutrophil Load Weight -2 1 1 1 1 -2 0.969230769 3 3.252367514 1 -2 0.925170068 1.6 2.46322088 1.033472803 -1 0.427272727 33.8 4.206610024 0.831372549 -2 0.877835951 8.3 3.764250875 0.967153285 -2 0.914862915 4.4 3.691700208 1.046025105 -2 0.560334528 4.9 2.604550033 0.98046875 -1 0.383073497 13.1 4.273556814 0.812316716 -1 0.101010101 18.6 5.089640217 0.771929825 -1 0.106719368 18.9 4.915125346 0.80994152 -2 0.894736842 2.5 2.691700208 0.995515695 -1 0.067226891 19.8 4.878194228 0.846153846 -2 0.921022067 2.9 4.127428778 1.03875969 -2 0.938701923 0.7 4.366310867 0.984732824 -1 0.658008658 15.7 4.531121115 0.884210526 -2 0.9 4.8 2.604550033 0.913194444 -2 0.790923825 10.4 2.390670213 0.892857143 -1 0.295539033 8.6 4.24137213 0.85840708 -2 0.317757009 12.2 4.449648073 0.889830508 -1 0.032418953 20.2 5.053428044 0.811320755 -1 0.603960396 23.4 4.283775979 0.805460751 -2 0.939351199 3.6 2.349277527 0.952380952 -1 0.978448276 0.4 3.495405563 0.8875 -1 0.1 23.2 4.675613388 0.766101695 -1 0.036363636 32.6 4.938109253 0.828125 -1 0.660247593 9.2 3.826398782 0.921052632 -1 0.078651685 35.8 4.513630383 0.852112676 -1 0.186915888 20.7 5.048247532 0.779761905 -1 0.071578947 35.6 4.574586809 0.797356828 -1 0.239520958 15.4 4.331548761 0.941176471 -1 0.205741627 24.5 5.058547488 0.774193548 -1 0.062300319 13.4 4.594790195 0.832236842 -2 0.599675851 5 4.18178644 0.969348659 -1 0.324246772 13.5 4.252367514 0.858585859 -1 0.87628866 14.2 2.929061124 0.869863014 -1 0.146103896 15.6 4.579726449 0.9 -1 0.257383966 22.5 5.210214148 0.75 -1 0.033333333 31.1 4.632578756 0.718644068 -1 0.29739777 36.1 3.880756445 0.798353909 -2 0.872979215 4.2 4.097465554 0.856756757 -2 0.909221902 4.3 3.650307523 0.976 -1 0.10041841 28.3 4.46322088 0.757462687 - diff --git a/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input_orig.txt b/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input_orig.txt deleted file mode 100644 index 62705bb9..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRcontinuous_input_orig.txt +++ /dev/null @@ -1,42 +0,0 @@ -Ctrq3 MAS Neutrophil Load Weight -2 0.969230769 3 3.252367514 1 -2 0.925170068 1.6 2.46322088 1.033472803 -1 0.427272727 33.8 4.206610024 0.831372549 -2 0.877835951 8.3 3.764250875 0.967153285 -2 0.914862915 4.4 3.691700208 1.046025105 -2 0.560334528 4.9 2.604550033 0.98046875 -1 0.383073497 13.1 4.273556814 0.812316716 -1 0.101010101 18.6 5.089640217 0.771929825 -1 0.106719368 18.9 4.915125346 0.80994152 -2 0.894736842 2.5 2.691700208 0.995515695 -1 0.067226891 19.8 4.878194228 0.846153846 -2 0.921022067 2.9 4.127428778 1.03875969 -2 0.938701923 0.7 4.366310867 0.984732824 -1 0.658008658 15.7 4.531121115 0.884210526 -2 0.9 4.8 2.604550033 0.913194444 -2 0.790923825 10.4 2.390670213 0.892857143 -1 0.295539033 8.6 4.24137213 0.85840708 -2 0.317757009 12.2 4.449648073 0.889830508 -1 0.032418953 20.2 5.053428044 0.811320755 -1 0.603960396 23.4 4.283775979 0.805460751 -2 0.939351199 3.6 2.349277527 0.952380952 -1 0.978448276 0.4 3.495405563 0.8875 -1 0.1 23.2 4.675613388 0.766101695 -1 0.036363636 32.6 4.938109253 0.828125 -1 0.660247593 9.2 3.826398782 0.921052632 -1 0.078651685 35.8 4.513630383 0.852112676 -1 0.186915888 20.7 5.048247532 0.779761905 -1 0.071578947 35.6 4.574586809 0.797356828 -1 0.239520958 15.4 4.331548761 0.941176471 -1 0.205741627 24.5 5.058547488 0.774193548 -1 0.062300319 13.4 4.594790195 0.832236842 -2 0.599675851 5 4.18178644 0.969348659 -1 0.324246772 13.5 4.252367514 0.858585859 -1 0.87628866 14.2 2.929061124 0.869863014 -1 0.146103896 15.6 4.579726449 0.9 -1 0.257383966 22.5 5.210214148 0.75 -1 0.033333333 31.1 4.632578756 0.718644068 -1 0.29739777 36.1 3.880756445 0.798353909 -2 0.872979215 4.2 4.097465554 0.856756757 -2 0.909221902 4.3 3.650307523 0.976 -1 0.10041841 28.3 4.46322088 0.757462687 diff --git a/sourcecodes/data/example_chl/old_gn/bWRgraphviz.txt b/sourcecodes/data/example_chl/old_gn/bWRgraphviz.txt deleted file mode 100644 index 2cd4e8cd..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRgraphviz.txt +++ /dev/null @@ -1,11 +0,0 @@ -digraph G { -size="10,10"; ratio = fill; -node [shape=square,width=1.5]; -Ctrq3 -> MAS; -Ctrq3 -> Neutrophil; -Ctrq3 -> Load; -Ctrq3 -> Weight; -MAS -> Neutrophil; -MAS -> Load; -Neutrophil -> Weight; -} \ No newline at end of file diff --git a/sourcecodes/data/example_chl/old_gn/bWRmap.txt b/sourcecodes/data/example_chl/old_gn/bWRmap.txt deleted file mode 100644 index b24eae2f..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRmap.txt +++ /dev/null @@ -1,5 +0,0 @@ -Ctrq3 0.487652 1.365854 -MAS 0.355012 0.479560 -Neutrophil 10.929756 15.048780 -Load 0.825354 4.077143 -Weight 0.088036 0.877077 diff --git a/sourcecodes/data/example_chl/old_gn/bWRmapdata.txt b/sourcecodes/data/example_chl/old_gn/bWRmapdata.txt deleted file mode 100644 index ce5416ce..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRmapdata.txt +++ /dev/null @@ -1 +0,0 @@ -Ctrq3 MAS Load Neutrophil Weight diff --git a/sourcecodes/data/example_chl/old_gn/bWRname.txt b/sourcecodes/data/example_chl/old_gn/bWRname.txt deleted file mode 100644 index 48018335..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRname.txt +++ /dev/null @@ -1 +0,0 @@ -Ctrq3 MAS Neutrophil Load Weight diff --git a/sourcecodes/data/example_chl/old_gn/bWRnet_figure.txt b/sourcecodes/data/example_chl/old_gn/bWRnet_figure.txt deleted file mode 100644 index 6a3a1dbc..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRnet_figure.txt +++ /dev/null @@ -1,433 +0,0 @@ -5 -1200 1200 -Ctrq3 200 0 -MAS 320 240 -Load 0 480 -Neutrophil 400 480 -Weight 320 720 -Ctrq3 2 -250 150 -0 -4 2 3 4 5 -1 0.6341 -2 0.3659 -MAS 1 -250 150 -1 1 -2 3 4 --0.3226 0.0292 --0.3060 0.0326 --0.2895 0.0362 --0.2729 0.0401 --0.2564 0.0443 --0.2398 0.0489 --0.2232 0.0539 --0.2067 0.0592 --0.1901 0.0648 --0.1735 0.0709 --0.1570 0.0774 --0.1404 0.0842 --0.1239 0.0915 --0.1073 0.0992 --0.0907 0.1072 --0.0742 0.1157 --0.0576 0.1246 --0.0411 0.1338 --0.0245 0.1434 --0.0079 0.1534 -0.0086 0.1636 -0.0252 0.1742 -0.0417 0.1850 -0.0583 0.1961 -0.0749 0.2074 -0.0914 0.2188 -0.1080 0.2303 -0.1245 0.2419 -0.1411 0.2535 -0.1577 0.2651 -0.1742 0.2766 -0.1908 0.2879 -0.2073 0.2991 -0.2239 0.3099 -0.2405 0.3205 -0.2570 0.3307 -0.2736 0.3404 -0.2901 0.3496 -0.3067 0.3583 -0.3233 0.3663 -0.3398 0.3737 -0.3564 0.3804 -0.3729 0.3864 -0.3895 0.3916 -0.4061 0.3959 -0.4226 0.3994 -0.4392 0.4021 -0.4558 0.4038 -0.4723 0.4047 -0.4889 0.4046 -0.5054 0.4037 -0.5220 0.4018 -0.5386 0.3991 -0.5551 0.3954 -0.5717 0.3910 -0.5882 0.3857 -0.6048 0.3797 -0.6214 0.3729 -0.6379 0.3654 -0.6545 0.3572 -0.6710 0.3485 -0.6876 0.3392 -0.7042 0.3294 -0.7207 0.3192 -0.7373 0.3086 -0.7538 0.2977 -0.7704 0.2865 -0.7870 0.2752 -0.8035 0.2637 -0.8201 0.2521 -0.8366 0.2405 -0.8532 0.2289 -0.8698 0.2173 -0.8863 0.2059 -0.9029 0.1947 -0.9194 0.1837 -0.9360 0.1729 -0.9526 0.1623 -0.9691 0.1521 -0.9857 0.1422 -1.0022 0.1326 -1.0188 0.1234 -1.0354 0.1146 -1.0519 0.1062 -1.0685 0.0982 -1.0851 0.0906 -1.1016 0.0834 -1.1182 0.0765 -1.1347 0.0701 -1.1513 0.0641 -1.1679 0.0585 -1.1844 0.0532 -1.2010 0.0483 -1.2175 0.0438 -1.2341 0.0396 -1.2507 0.0357 -1.2672 0.0321 -1.2838 0.0288 -1.3003 0.0258 -1.3169 0.0231 -1.3335 0.0206 -Load 1 -250 150 -2 1 2 -0 -1.5239 0.0030 -1.5690 0.0036 -1.6142 0.0043 -1.6593 0.0050 -1.7044 0.0059 -1.7495 0.0069 -1.7946 0.0081 -1.8397 0.0094 -1.8849 0.0110 -1.9300 0.0127 -1.9751 0.0147 -2.0202 0.0169 -2.0653 0.0194 -2.1104 0.0222 -2.1556 0.0253 -2.2007 0.0287 -2.2458 0.0326 -2.2909 0.0368 -2.3360 0.0415 -2.3811 0.0466 -2.4263 0.0522 -2.4714 0.0583 -2.5165 0.0649 -2.5616 0.0720 -2.6067 0.0797 -2.6518 0.0879 -2.6970 0.0966 -2.7421 0.1059 -2.7872 0.1158 -2.8323 0.1261 -2.8774 0.1370 -2.9225 0.1484 -2.9676 0.1602 -3.0128 0.1724 -3.0579 0.1850 -3.1030 0.1979 -3.1481 0.2111 -3.1932 0.2244 -3.2383 0.2379 -3.2835 0.2514 -3.3286 0.2649 -3.3737 0.2782 -3.4188 0.2914 -3.4639 0.3042 -3.5090 0.3166 -3.5542 0.3285 -3.5993 0.3398 -3.6444 0.3504 -3.6895 0.3603 -3.7346 0.3693 -3.7797 0.3774 -3.8249 0.3845 -3.8700 0.3905 -3.9151 0.3954 -3.9602 0.3992 -4.0053 0.4017 -4.0504 0.4031 -4.0956 0.4032 -4.1407 0.4021 -4.1858 0.3997 -4.2309 0.3962 -4.2760 0.3915 -4.3211 0.3857 -4.3663 0.3788 -4.4114 0.3709 -4.4565 0.3620 -4.5016 0.3523 -4.5467 0.3418 -4.5918 0.3306 -4.6370 0.3188 -4.6821 0.3065 -4.7272 0.2937 -4.7723 0.2807 -4.8174 0.2674 -4.8625 0.2539 -4.9077 0.2404 -4.9528 0.2269 -4.9979 0.2135 -5.0430 0.2003 -5.0881 0.1874 -5.1332 0.1747 -5.1784 0.1624 -5.2235 0.1505 -5.2686 0.1391 -5.3137 0.1281 -5.3588 0.1176 -5.4039 0.1077 -5.4491 0.0983 -5.4942 0.0894 -5.5393 0.0811 -5.5844 0.0734 -5.6295 0.0662 -5.6746 0.0595 -5.7198 0.0533 -5.7649 0.0476 -5.8100 0.0424 -5.8551 0.0377 -5.9002 0.0333 -5.9453 0.0294 -5.9905 0.0259 -6.0356 0.0227 -Neutrophil 1 -250 150 -2 1 2 -1 5 --10.5298 0.0245 --9.9542 0.0277 --9.3786 0.0313 --8.8030 0.0353 --8.2274 0.0396 --7.6518 0.0444 --7.0762 0.0496 --6.5006 0.0552 --5.9250 0.0613 --5.3494 0.0679 --4.7738 0.0750 --4.1982 0.0825 --3.6226 0.0906 --3.0470 0.0992 --2.4714 0.1083 --1.8958 0.1180 --1.3202 0.1281 --0.7446 0.1386 --0.1690 0.1496 -0.4066 0.1611 -0.9821 0.1729 -1.5577 0.1851 -2.1333 0.1975 -2.7089 0.2102 -3.2845 0.2231 -3.8601 0.2361 -4.4357 0.2491 -5.0113 0.2621 -5.5869 0.2750 -6.1625 0.2878 -6.7381 0.3002 -7.3137 0.3124 -7.8893 0.3240 -8.4649 0.3352 -9.0405 0.3458 -9.6161 0.3557 -10.1917 0.3648 -10.7673 0.3731 -11.3429 0.3806 -11.9185 0.3870 -12.4940 0.3925 -13.0696 0.3969 -13.6452 0.4002 -14.2208 0.4025 -14.7964 0.4035 -15.3720 0.4035 -15.9476 0.4022 -16.5232 0.3999 -17.0988 0.3964 -17.6744 0.3919 -18.2500 0.3863 -18.8256 0.3797 -19.4012 0.3722 -19.9768 0.3637 -20.5524 0.3545 -21.1280 0.3445 -21.7036 0.3339 -22.2792 0.3226 -22.8548 0.3109 -23.4304 0.2987 -24.0060 0.2862 -24.5815 0.2735 -25.1571 0.2605 -25.7327 0.2475 -26.3083 0.2345 -26.8839 0.2215 -27.4595 0.2086 -28.0351 0.1960 -28.6107 0.1835 -29.1863 0.1714 -29.7619 0.1597 -30.3375 0.1483 -30.9131 0.1373 -31.4887 0.1268 -32.0643 0.1167 -32.6399 0.1072 -33.2155 0.0981 -33.7911 0.0896 -34.3667 0.0816 -34.9423 0.0741 -35.5179 0.0670 -36.0934 0.0605 -36.6690 0.0545 -37.2446 0.0489 -37.8202 0.0438 -38.3958 0.0391 -38.9714 0.0348 -39.5470 0.0308 -40.1226 0.0273 -40.6982 0.0241 -41.2738 0.0212 -41.8494 0.0186 -42.4250 0.0163 -43.0006 0.0142 -43.5762 0.0123 -44.1518 0.0107 -44.7274 0.0093 -45.3030 0.0080 -45.8786 0.0069 -46.4542 0.0059 -47.0298 0.0050 -Weight 1 -250 150 -2 1 4 -0 -0.6306 0.0076 -0.6356 0.0089 -0.6407 0.0105 -0.6457 0.0122 -0.6507 0.0142 -0.6558 0.0164 -0.6608 0.0190 -0.6659 0.0218 -0.6709 0.0250 -0.6759 0.0286 -0.6810 0.0326 -0.6860 0.0370 -0.6910 0.0419 -0.6961 0.0473 -0.7011 0.0531 -0.7061 0.0596 -0.7112 0.0665 -0.7162 0.0741 -0.7212 0.0822 -0.7263 0.0909 -0.7313 0.1002 -0.7363 0.1101 -0.7414 0.1206 -0.7464 0.1316 -0.7514 0.1432 -0.7565 0.1553 -0.7615 0.1678 -0.7665 0.1808 -0.7716 0.1941 -0.7766 0.2076 -0.7816 0.2215 -0.7867 0.2354 -0.7917 0.2494 -0.7967 0.2633 -0.8018 0.2772 -0.8068 0.2907 -0.8119 0.3040 -0.8169 0.3168 -0.8219 0.3290 -0.8270 0.3406 -0.8320 0.3514 -0.8370 0.3614 -0.8421 0.3704 -0.8471 0.3784 -0.8521 0.3853 -0.8572 0.3910 -0.8622 0.3955 -0.8672 0.3988 -0.8723 0.4007 -0.8773 0.4013 -0.8823 0.4006 -0.8874 0.3985 -0.8924 0.3952 -0.8974 0.3906 -0.9025 0.3847 -0.9075 0.3778 -0.9125 0.3697 -0.9176 0.3605 -0.9226 0.3505 -0.9276 0.3396 -0.9327 0.3280 -0.9377 0.3157 -0.9427 0.3028 -0.9478 0.2896 -0.9528 0.2759 -0.9579 0.2621 -0.9629 0.2481 -0.9679 0.2342 -0.9730 0.2202 -0.9780 0.2064 -0.9830 0.1929 -0.9881 0.1796 -0.9931 0.1667 -0.9981 0.1542 -1.0032 0.1422 -1.0082 0.1306 -1.0132 0.1197 -1.0183 0.1092 -1.0233 0.0994 -1.0283 0.0901 -1.0334 0.0815 -1.0384 0.0734 -1.0434 0.0659 -1.0485 0.0590 -1.0535 0.0526 -1.0585 0.0468 -1.0636 0.0414 -1.0686 0.0366 -1.0736 0.0322 -1.0787 0.0283 -1.0837 0.0247 -1.0888 0.0215 -1.0938 0.0187 -1.0988 0.0162 -1.1039 0.0140 -1.1089 0.0120 -1.1139 0.0103 -1.1190 0.0088 -1.1240 0.0075 -1.1290 0.0064 -1.1341 0.0054 diff --git a/sourcecodes/data/example_chl/old_gn/bWRnet_figure_new.txt b/sourcecodes/data/example_chl/old_gn/bWRnet_figure_new.txt deleted file mode 100644 index 9b493660..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRnet_figure_new.txt +++ /dev/null @@ -1,433 +0,0 @@ -1 -5 -1200 1200 -Ctrq3 200 0 -MAS 320 240 -Load 0 480 -Neutrophil 400 480 -Weight 320 720 -Ctrq3 2 -250 150 -0 -4 2 3 4 5 -1.0000 1.0000 -MAS 1 -250 150 -1 1 -2 3 4 --2.2595 0.0066 --2.2129 0.0085 --2.1662 0.0109 --2.1196 0.0138 --2.0729 0.0174 --2.0263 0.0219 --1.9796 0.0272 --1.9330 0.0336 --1.8863 0.0412 --1.8397 0.0501 --1.7930 0.0606 --1.7464 0.0728 --1.6997 0.0868 --1.6531 0.1027 --1.6064 0.1208 --1.5598 0.1410 --1.5131 0.1635 --1.4665 0.1882 --1.4199 0.2151 --1.3732 0.2442 --1.3266 0.2752 --1.2799 0.3080 --1.2333 0.3423 --1.1866 0.3777 --1.1400 0.4139 --1.0933 0.4503 --1.0467 0.4866 --1.0000 0.5221 --0.9534 0.5562 --0.9067 0.5884 --0.8601 0.6182 --0.8134 0.6448 --0.7668 0.6679 --0.7201 0.6870 --0.6735 0.7017 --0.6268 0.7116 --0.5802 0.7167 --0.5335 0.7167 --0.4869 0.7117 --0.4402 0.7018 --0.3936 0.6871 --0.3470 0.6681 --0.3003 0.6450 --0.2537 0.6184 --0.2070 0.5887 --0.1604 0.5565 --0.1137 0.5223 --0.0671 0.4869 --0.0204 0.4506 -0.0262 0.4142 -0.0729 0.3780 -0.1195 0.3425 -0.1662 0.3082 -0.2128 0.2754 -0.2595 0.2444 -0.3061 0.2153 -0.3528 0.1884 -0.3994 0.1637 -0.4461 0.1412 -0.4927 0.1209 -0.5394 0.1029 -0.5860 0.0869 -0.6327 0.0729 -0.6793 0.0607 -0.7259 0.0502 -0.7726 0.0412 -0.8192 0.0336 -0.8659 0.0272 -0.9125 0.0219 -0.9592 0.0175 -1.0058 0.0139 -1.0525 0.0109 -1.0991 0.0085 -1.1458 0.0066 -1.1924 0.0051 -1.2391 0.0039 -1.2857 0.0030 -1.3324 0.0022 -1.3790 0.0017 -1.4257 0.0012 -1.4723 0.0009 -1.5190 0.0007 -1.5656 0.0005 -1.6123 0.0004 -1.6589 0.0003 -1.7056 0.0002 -1.7522 0.0001 -1.7989 0.0001 -1.8455 0.0001 -1.8921 0.0000 -1.9388 0.0000 -1.9854 0.0000 -2.0321 0.0000 -2.0787 0.0000 -2.1254 0.0000 -2.1720 0.0000 -2.2187 0.0000 -2.2653 0.0000 -2.3120 0.0000 -2.3586 0.0000 -2.4053 0.0000 -Load 1 -250 150 -2 1 2 -0 --3.0935 0.0000 --3.0388 0.0000 --2.9842 0.0000 --2.9295 0.0000 --2.8748 0.0000 --2.8202 0.0000 --2.7655 0.0000 --2.7108 0.0000 --2.6562 0.0000 --2.6015 0.0000 --2.5469 0.0000 --2.4922 0.0000 --2.4375 0.0000 --2.3829 0.0000 --2.3282 0.0000 --2.2735 0.0000 --2.2189 0.0000 --2.1642 0.0000 --2.1095 0.0000 --2.0549 0.0000 --2.0002 0.0000 --1.9456 0.0000 --1.8909 0.0000 --1.8362 0.0000 --1.7816 0.0000 --1.7269 0.0000 --1.6722 0.0000 --1.6176 0.0000 --1.5629 0.0000 --1.5083 0.0000 --1.4536 0.0000 --1.3989 0.0000 --1.3443 0.0000 --1.2896 0.0001 --1.2349 0.0001 --1.1803 0.0002 --1.1256 0.0004 --1.0709 0.0007 --1.0163 0.0011 --0.9616 0.0018 --0.9070 0.0029 --0.8523 0.0046 --0.7976 0.0070 --0.7430 0.0106 --0.6883 0.0157 --0.6336 0.0228 --0.5790 0.0326 --0.5243 0.0458 --0.4697 0.0631 --0.4150 0.0855 --0.3603 0.1138 --0.3057 0.1487 --0.2510 0.1910 --0.1963 0.2409 --0.1417 0.2985 --0.0870 0.3633 --0.0323 0.4344 -0.0223 0.5102 -0.0770 0.5887 -0.1316 0.6672 -0.1863 0.7428 -0.2410 0.8124 -0.2956 0.8728 -0.3503 0.9211 -0.4050 0.9548 -0.4596 0.9724 -0.5143 0.9727 -0.5689 0.9558 -0.6236 0.9226 -0.6783 0.8749 -0.7329 0.8149 -0.7876 0.7456 -0.8423 0.6702 -0.8969 0.5917 -0.9516 0.5132 -1.0063 0.4372 -1.0609 0.3659 -1.1156 0.3008 -1.1702 0.2430 -1.2249 0.1927 -1.2796 0.1502 -1.3342 0.1150 -1.3889 0.0865 -1.4436 0.0639 -1.4982 0.0463 -1.5529 0.0330 -1.6075 0.0231 -1.6622 0.0159 -1.7169 0.0107 -1.7715 0.0071 -1.8262 0.0047 -1.8809 0.0030 -1.9355 0.0019 -1.9902 0.0012 -2.0449 0.0007 -2.0995 0.0004 -2.1542 0.0002 -2.2088 0.0001 -2.2635 0.0001 -2.3182 0.0000 -2.3728 0.0000 -Neutrophil 1 -250 150 -2 1 2 -1 5 --2.3403 0.0002 --2.2876 0.0002 --2.2349 0.0003 --2.1823 0.0004 --2.1296 0.0005 --2.0770 0.0007 --2.0243 0.0009 --1.9716 0.0012 --1.9190 0.0015 --1.8663 0.0020 --1.8136 0.0025 --1.7610 0.0032 --1.7083 0.0040 --1.6556 0.0051 --1.6030 0.0063 --1.5503 0.0079 --1.4977 0.0097 --1.4450 0.0120 --1.3923 0.0146 --1.3397 0.0178 --1.2870 0.0215 --1.2343 0.0259 --1.1817 0.0310 --1.1290 0.0369 --1.0764 0.0437 --1.0237 0.0514 --0.9710 0.0602 --0.9184 0.0702 --0.8657 0.0813 --0.8130 0.0937 --0.7604 0.1074 --0.7077 0.1224 --0.6550 0.1388 --0.6024 0.1565 --0.5497 0.1755 --0.4971 0.1957 --0.4444 0.2171 --0.3917 0.2396 --0.3391 0.2629 --0.2864 0.2870 --0.2337 0.3116 --0.1811 0.3364 --0.1284 0.3613 --0.0758 0.3859 --0.0231 0.4099 -0.0296 0.4331 -0.0822 0.4552 -0.1349 0.4757 -0.1876 0.4946 -0.2402 0.5113 -0.2929 0.5258 -0.3456 0.5378 -0.3982 0.5471 -0.4509 0.5535 -0.5035 0.5570 -0.5562 0.5575 -0.6089 0.5549 -0.6615 0.5494 -0.7142 0.5410 -0.7669 0.5299 -0.8195 0.5162 -0.8722 0.5001 -0.9248 0.4819 -0.9775 0.4618 -1.0302 0.4402 -1.0828 0.4173 -1.1355 0.3935 -1.1882 0.3691 -1.2408 0.3443 -1.2935 0.3194 -1.3462 0.2947 -1.3988 0.2704 -1.4515 0.2469 -1.5041 0.2241 -1.5568 0.2023 -1.6095 0.1817 -1.6621 0.1623 -1.7148 0.1442 -1.7675 0.1274 -1.8201 0.1120 -1.8728 0.0979 -1.9254 0.0851 -1.9781 0.0736 -2.0308 0.0632 -2.0834 0.0541 -2.1361 0.0460 -2.1888 0.0389 -2.2414 0.0328 -2.2941 0.0274 -2.3468 0.0228 -2.3994 0.0189 -2.4521 0.0156 -2.5047 0.0127 -2.5574 0.0104 -2.6101 0.0084 -2.6627 0.0068 -2.7154 0.0054 -2.7681 0.0043 -2.8207 0.0034 -2.8734 0.0027 -2.9260 0.0021 -Weight 1 -250 150 -2 1 4 -0 --2.7996 0.0000 --2.7425 0.0000 --2.6853 0.0000 --2.6281 0.0000 --2.5709 0.0000 --2.5137 0.0000 --2.4565 0.0000 --2.3993 0.0000 --2.3421 0.0000 --2.2850 0.0001 --2.2278 0.0001 --2.1706 0.0003 --2.1134 0.0005 --2.0562 0.0008 --1.9990 0.0014 --1.9418 0.0024 --1.8846 0.0040 --1.8275 0.0064 --1.7703 0.0101 --1.7131 0.0156 --1.6559 0.0236 --1.5987 0.0350 --1.5415 0.0507 --1.4843 0.0718 --1.4271 0.0996 --1.3700 0.1353 --1.3128 0.1797 --1.2556 0.2338 --1.1984 0.2976 --1.1412 0.3707 --1.0840 0.4520 --1.0268 0.5393 --0.9696 0.6299 --0.9125 0.7200 --0.8553 0.8055 --0.7981 0.8819 --0.7409 0.9451 --0.6837 0.9913 --0.6265 1.0175 --0.5693 1.0223 --0.5121 1.0052 --0.4550 0.9673 --0.3978 0.9111 --0.3406 0.8399 --0.2834 0.7577 --0.2262 0.6691 --0.1690 0.5782 --0.1118 0.4891 --0.0546 0.4049 -0.0025 0.3280 -0.0597 0.2601 -0.1169 0.2019 -0.1741 0.1533 -0.2313 0.1140 -0.2885 0.0829 -0.3457 0.0591 -0.4029 0.0412 -0.4600 0.0281 -0.5172 0.0187 -0.5744 0.0122 -0.6316 0.0078 -0.6888 0.0049 -0.7460 0.0030 -0.8032 0.0018 -0.8603 0.0011 -0.9175 0.0006 -0.9747 0.0003 -1.0319 0.0002 -1.0891 0.0001 -1.1463 0.0001 -1.2035 0.0000 -1.2607 0.0000 -1.3178 0.0000 -1.3750 0.0000 -1.4322 0.0000 -1.4894 0.0000 -1.5466 0.0000 -1.6038 0.0000 -1.6610 0.0000 -1.7182 0.0000 -1.7753 0.0000 -1.8325 0.0000 -1.8897 0.0000 -1.9469 0.0000 -2.0041 0.0000 -2.0613 0.0000 -2.1185 0.0000 -2.1757 0.0000 -2.2328 0.0000 -2.2900 0.0000 -2.3472 0.0000 -2.4044 0.0000 -2.4616 0.0000 -2.5188 0.0000 -2.5760 0.0000 -2.6332 0.0000 -2.6903 0.0000 -2.7475 0.0000 -2.8047 0.0000 -2.8619 0.0000 -2.9191 0.0000 diff --git a/sourcecodes/data/example_chl/old_gn/bWRnlevels.txt b/sourcecodes/data/example_chl/old_gn/bWRnlevels.txt deleted file mode 100644 index 9f618060..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRnlevels.txt +++ /dev/null @@ -1,2 +0,0 @@ -Ctrq3 1 2 - diff --git a/sourcecodes/data/example_chl/old_gn/bWRnnode.txt b/sourcecodes/data/example_chl/old_gn/bWRnnode.txt deleted file mode 100644 index 7ed6ff82..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRnnode.txt +++ /dev/null @@ -1 +0,0 @@ -5 diff --git a/sourcecodes/data/example_chl/old_gn/bWRparameters.txt b/sourcecodes/data/example_chl/old_gn/bWRparameters.txt deleted file mode 100644 index 6d6eabf6..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRparameters.txt +++ /dev/null @@ -1,21 +0,0 @@ -Ctrq3 -Discrete node with 2 states -1 0.6341 -2 0.3659 - -MAS -Continuous node -0.4796 0.3499 - -Neutrophil -Continuous node -15.0488 10.8026 - -Load -Continuous node -4.0771 0.8165 - -Weight -Continuous node -0.8771 0.0875 - diff --git a/sourcecodes/data/example_chl/old_gn/bWRstructure_input.txt b/sourcecodes/data/example_chl/old_gn/bWRstructure_input.txt deleted file mode 100644 index efa98e06..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRstructure_input.txt +++ /dev/null @@ -1,7 +0,0 @@ -Ctrq3 MAS Neutrophil Load Weight -0 1 1 1 1 -0 0 1 1 0 -0 0 0 0 1 -0 0 0 0 0 -0 0 0 0 0 - diff --git a/sourcecodes/data/example_chl/old_gn/bWRstructure_old.txt b/sourcecodes/data/example_chl/old_gn/bWRstructure_old.txt deleted file mode 100644 index a6aed858..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRstructure_old.txt +++ /dev/null @@ -1,5 +0,0 @@ -Ctrq3 0.6341 0.3659 -MAS 0.0292 0.0326 0.0362 0.0401 0.0443 0.0489 0.0539 0.0592 0.0648 0.0709 0.0774 0.0842 0.0915 0.0992 0.1072 0.1157 0.1246 0.1338 0.1434 0.1534 0.1636 0.1742 0.1850 0.1961 0.2074 0.2188 0.2303 0.2419 0.2535 0.2651 0.2766 0.2879 0.2991 0.3099 0.3205 0.3307 0.3404 0.3496 0.3583 0.3663 0.3737 0.3804 0.3864 0.3916 0.3959 0.3994 0.4021 0.4038 0.4047 0.4046 0.4037 0.4018 0.3991 0.3954 0.3910 0.3857 0.3797 0.3729 0.3654 0.3572 0.3485 0.3392 0.3294 0.3192 0.3086 0.2977 0.2865 0.2752 0.2637 0.2521 0.2405 0.2289 0.2173 0.2059 0.1947 0.1837 0.1729 0.1623 0.1521 0.1422 0.1326 0.1234 0.1146 0.1062 0.0982 0.0906 0.0834 0.0765 0.0701 0.0641 0.0585 0.0532 0.0483 0.0438 0.0396 0.0357 0.0321 0.0288 0.0258 0.0231 0.0206 -Neutrophil 0.0245 0.0277 0.0313 0.0353 0.0396 0.0444 0.0496 0.0552 0.0613 0.0679 0.0750 0.0825 0.0906 0.0992 0.1083 0.1180 0.1281 0.1386 0.1496 0.1611 0.1729 0.1851 0.1975 0.2102 0.2231 0.2361 0.2491 0.2621 0.2750 0.2878 0.3002 0.3124 0.3240 0.3352 0.3458 0.3557 0.3648 0.3731 0.3806 0.3870 0.3925 0.3969 0.4002 0.4025 0.4035 0.4035 0.4022 0.3999 0.3964 0.3919 0.3863 0.3797 0.3722 0.3637 0.3545 0.3445 0.3339 0.3226 0.3109 0.2987 0.2862 0.2735 0.2605 0.2475 0.2345 0.2215 0.2086 0.1960 0.1835 0.1714 0.1597 0.1483 0.1373 0.1268 0.1167 0.1072 0.0981 0.0896 0.0816 0.0741 0.0670 0.0605 0.0545 0.0489 0.0438 0.0391 0.0348 0.0308 0.0273 0.0241 0.0212 0.0186 0.0163 0.0142 0.0123 0.0107 0.0093 0.0080 0.0069 0.0059 0.0050 -Load 0.0030 0.0036 0.0043 0.0050 0.0059 0.0069 0.0081 0.0094 0.0110 0.0127 0.0147 0.0169 0.0194 0.0222 0.0253 0.0287 0.0326 0.0368 0.0415 0.0466 0.0522 0.0583 0.0649 0.0720 0.0797 0.0879 0.0966 0.1059 0.1158 0.1261 0.1370 0.1484 0.1602 0.1724 0.1850 0.1979 0.2111 0.2244 0.2379 0.2514 0.2649 0.2782 0.2914 0.3042 0.3166 0.3285 0.3398 0.3504 0.3603 0.3693 0.3774 0.3845 0.3905 0.3954 0.3992 0.4017 0.4031 0.4032 0.4021 0.3997 0.3962 0.3915 0.3857 0.3788 0.3709 0.3620 0.3523 0.3418 0.3306 0.3188 0.3065 0.2937 0.2807 0.2674 0.2539 0.2404 0.2269 0.2135 0.2003 0.1874 0.1747 0.1624 0.1505 0.1391 0.1281 0.1176 0.1077 0.0983 0.0894 0.0811 0.0734 0.0662 0.0595 0.0533 0.0476 0.0424 0.0377 0.0333 0.0294 0.0259 0.0227 -Weight 0.0076 0.0089 0.0105 0.0122 0.0142 0.0164 0.0190 0.0218 0.0250 0.0286 0.0326 0.0370 0.0419 0.0473 0.0531 0.0596 0.0665 0.0741 0.0822 0.0909 0.1002 0.1101 0.1206 0.1316 0.1432 0.1553 0.1678 0.1808 0.1941 0.2076 0.2215 0.2354 0.2494 0.2633 0.2772 0.2907 0.3040 0.3168 0.3290 0.3406 0.3514 0.3614 0.3704 0.3784 0.3853 0.3910 0.3955 0.3988 0.4007 0.4013 0.4006 0.3985 0.3952 0.3906 0.3847 0.3778 0.3697 0.3605 0.3505 0.3396 0.3280 0.3157 0.3028 0.2896 0.2759 0.2621 0.2481 0.2342 0.2202 0.2064 0.1929 0.1796 0.1667 0.1542 0.1422 0.1306 0.1197 0.1092 0.0994 0.0901 0.0815 0.0734 0.0659 0.0590 0.0526 0.0468 0.0414 0.0366 0.0322 0.0283 0.0247 0.0215 0.0187 0.0162 0.0140 0.0120 0.0103 0.0088 0.0075 0.0064 0.0054 diff --git a/sourcecodes/data/example_chl/old_gn/bWRtype.txt b/sourcecodes/data/example_chl/old_gn/bWRtype.txt deleted file mode 100644 index 03b402ee..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRtype.txt +++ /dev/null @@ -1,2 +0,0 @@ -Ctrq3 MAS Neutrophil Load Weight -2 1 1 1 1 diff --git a/sourcecodes/data/example_chl/old_gn/bWRvar.txt b/sourcecodes/data/example_chl/old_gn/bWRvar.txt deleted file mode 100644 index 56a6051c..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRvar.txt +++ /dev/null @@ -1 +0,0 @@ -1 \ No newline at end of file diff --git a/sourcecodes/data/example_chl/old_gn/bWRvardata.txt b/sourcecodes/data/example_chl/old_gn/bWRvardata.txt deleted file mode 100644 index 56a6051c..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRvardata.txt +++ /dev/null @@ -1 +0,0 @@ -1 \ No newline at end of file diff --git a/sourcecodes/data/example_chl/old_gn/bWRvarname.txt b/sourcecodes/data/example_chl/old_gn/bWRvarname.txt deleted file mode 100644 index 6ef2df09..00000000 --- a/sourcecodes/data/example_chl/old_gn/bWRvarname.txt +++ /dev/null @@ -1 +0,0 @@ -Ctrq3 \ No newline at end of file diff --git a/sourcecodes/data/example_chr2_spleen/cuLban.txt b/sourcecodes/data/example_chr2_spleen/cuLban.txt deleted file mode 100644 index fdd12dda..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLban.txt +++ /dev/null @@ -1,51 +0,0 @@ -From To -Ifih1 rs3664317 -Oas1a rs3664317 -Parp9 rs3664317 -Dhx58 rs3664317 -Cd1d1 rs3664317 -Irf7 rs3664317 -Oas3 rs3664317 -Pml rs3664317 -Mx1 rs3664317 -Ifit1 rs3664317 -Trim25 rs3664317 -Oas1g rs3664317 -Pglyrp3 rs3664317 -Ifih1 rs3664317 -Oas1a Ifih1 -Parp9 Ifih1 -Dhx58 Ifih1 -Cd1d1 Ifih1 -Irf7 Ifih1 -Oas3 Ifih1 -Pml Ifih1 -Mx1 Ifih1 -Ifit1 Ifih1 -Trim25 Ifih1 -Oas1g Ifih1 -Pglyrp3 Ifih1 -Oas1a rs3664317 -Parp9 rs3664317 -Dhx58 rs3664317 -Cd1d1 rs3664317 -Irf7 rs3664317 -Oas3 rs3664317 -Pml rs3664317 -Mx1 rs3664317 -Ifit1 rs3664317 -Trim25 rs3664317 -Oas1g rs3664317 -Pglyrp3 rs3664317 -Oas1a Ifih1 -Parp9 Ifih1 -Dhx58 Ifih1 -Cd1d1 Ifih1 -Irf7 Ifih1 -Oas3 Ifih1 -Pml Ifih1 -Mx1 Ifih1 -Ifit1 Ifih1 -Trim25 Ifih1 -Oas1g Ifih1 -Pglyrp3 Ifih1 diff --git a/sourcecodes/data/example_chr2_spleen/cuLcontinuous_input.txt b/sourcecodes/data/example_chr2_spleen/cuLcontinuous_input.txt deleted file mode 100644 index ca8ea1e5..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLcontinuous_input.txt +++ /dev/null @@ -1,76 +0,0 @@ -rs3664317 Oas1a Parp9 Dhx58 Cd1d1 Irf7 Oas3 Pml Mx1 Ifit1 Trim25 Oas1g Pglyrp3 Ifih1 -2 1 1 1 1 1 1 1 1 1 1 1 1 1 -1 8.34 9.812 8.774 9.79 9.663 8.27 11.036 7.284 8.286 10.395 8.521 6.186 8.83 -1 8.368 9.738 8.566 9.144 9.484 8.818 11.03 6.977 8.294 10.076 8.529 5.968 8.828 -1 8.178 9.57 8.726 9.575 10.106 8.99 10.878 7.205 8.676 10.036 8.61 5.976 9.024 -1 8.116 9.901 8.904 9.959 9.793 8.336 11.105 7.598 8.316 10.292 8.401 5.814 8.836 -2 8.099 9.68 8.876 10.116 9.771 8.379 11.028 7.438 8.541 10.215 8.32 5.917 9.073 -1 8.262 9.59 8.24 10.088 8.938 7.832 10.486 6.752 7.825 9.908 8.196 6.15 8.446 -1 7.915 9.415 8.308 9.707 9.12 8.702 11.102 7.208 8.243 10.034 7.897 6.06 8.892 -2 8.565 10.002 8.96 9.779 10.322 9.24 11.278 7.644 8.893 10.42 8.773 5.914 9.407 -1 8.189 9.774 8.541 9.939 9.134 7.819 10.766 7.122 8.352 10.113 8.492 6.269 9.055 -1 8.476 9.954 8.908 9.476 9.92 8.764 11.134 7.859 8.788 10.17 8.862 6.226 9.17 -2 8.119 9.946 8.876 9.578 10.02 8.734 11.244 7.85 8.838 10.557 8.56 5.98 9.353 -2 8.305 9.713 8.972 9.789 9.839 8.804 10.948 7.682 8.896 10.181 8.854 5.979 9.567 -2 8.654 10 9.306 9.439 10.457 9.223 10.922 7.082 8.942 10.131 9.162 6.01 9.74 -1 8.105 9.748 8.725 10.119 9.782 8.575 11.113 7.63 8.674 10.355 8.59 6.279 8.908 -1 8.247 9.715 8.829 9.646 9.953 9.668 11.112 7.384 9.221 10.19 8.64 6 9.552 -1 8.511 9.994 9.014 9.89 10.266 8.444 10.599 7.331 9.153 10.012 8.837 6.148 9.023 -2 8.947 10.28 9.483 9.398 11.23 9.86 11.324 8.006 9.772 10.524 9.587 5.865 10.067 -1 8.526 9.685 8.921 9.7 10.126 9.373 11.121 7.497 9.003 10.357 8.156 6.334 9.678 -2 8.06 9.745 9.092 9.278 10.231 8.976 10.998 7.578 9.145 10.283 8.611 6.168 9.413 -2 7.93 9.728 8.694 9.512 9.826 9.016 11.276 7.604 8.767 10.378 8.577 5.963 9.264 -2 8.511 9.686 9.014 8.982 10.508 10.108 11.304 7.441 9.133 10.341 9.04 6.2 9.974 -2 8.645 9.997 8.97 9.443 10.393 9.302 11.409 7.785 8.894 10.552 9.051 5.997 9.412 -2 8.293 9.802 9.001 9.524 10.156 9.263 11.212 7.772 8.581 10.433 8.514 6.093 9.177 -1 7.781 9.712 8.97 9.375 10.12 9.484 11.317 7.347 8.972 10.393 8.352 6.193 9.587 -2 8.465 9.88 8.913 9.816 9.965 8.852 11.138 7.537 8.625 10.426 8.617 6.044 9.556 -2 8.657 10.026 9.189 9.691 10.302 9.268 11.194 7.634 9.143 10.378 9.05 6.067 9.679 -2 7.634 9.606 8.36 9.465 8.41 8.605 11.183 6.942 8.174 9.952 7.478 6.09 9.535 -1 7.669 9.494 8.779 9.552 9.362 8.52 11.024 7.131 8.378 10.391 8.114 6.07 8.851 -2 8.618 10.212 9.433 9.672 10.442 9.21 11.328 8.045 9.322 10.5 9.128 5.994 9.656 -2 8.731 10.27 9.342 9.43 10.697 10.117 11.286 7.749 9.734 10.464 9.322 6.156 9.876 -1 7.554 9.524 8.759 9.93 9.52 8.279 10.82 7.32 8.316 10.31 8.186 6.068 9.046 -1 8.262 9.677 8.75 9.444 10.052 8.634 10.888 7.32 8.562 9.893 8.644 6.212 8.918 -1 7.823 9.628 8.66 9.529 9.578 8.736 11.206 7.171 8.408 10.062 8.111 5.838 9.033 -1 8.28 9.572 8.784 9.428 9.862 9.424 11.27 7.288 8.505 10.174 8.642 6.022 9.313 -2 9.09 10.053 9.599 9.469 11.004 9.882 11.436 8.521 9.814 10.562 9.704 6.044 10.061 -1 8.446 9.989 9.297 9.688 10.577 9.129 11.102 7.718 9.484 10.231 9.072 6.17 9.21 -1 8.668 9.858 9.195 9.385 10.695 9.249 11.028 7.765 9.367 10.319 9.179 6.136 9.563 -2 8.574 10.059 9.281 9.233 10.508 9.247 11.145 8.138 9.505 10.402 9.192 5.992 9.848 -2 8.523 10.052 9.131 9.507 10.418 9.413 11.187 7.641 9.304 10.465 9.063 6.095 9.733 -1 7.987 9.748 8.766 9.578 9.781 8.482 11.279 7.52 8.364 10.141 8.207 6.192 9.133 -2 8.466 9.429 8.946 9.395 9.715 9.071 11.388 7.592 8.078 10.32 8.326 6.108 9.021 -1 7.668 9.694 8.493 10.112 9.561 8.394 10.922 7.26 8.19 10.27 7.916 5.892 8.974 -2 8.379 10.037 9.155 9.683 10.281 9.2 10.913 7.173 9.404 10.381 9.097 6.099 9.714 -2 7.805 9.654 8.454 9.198 10.065 9.468 11.217 6.917 8.43 10.459 8.11 6.068 9.068 -1 7.981 9.8 8.553 9.946 9.862 8.901 11.085 7.214 8.393 10.373 8.19 6.05 9.015 -1 7.746 9.688 8.578 9.901 9.358 7.866 10.928 7.354 7.929 10.233 8.066 5.754 8.883 -1 7.997 9.859 8.795 9.867 9.817 8.734 11.109 7.416 8.67 10.247 8.176 6.143 9.081 -1 8.674 9.689 9.06 9.81 10.544 8.995 11.189 7.781 9.219 10.07 8.98 5.992 9.143 -1 8.088 9.49 8.676 9.456 10.184 8.737 10.998 7.222 8.538 10.192 8.441 6.147 8.55 -1 8.001 9.801 8.669 9.977 9.383 8.274 11.055 7.231 7.913 10.272 8.277 5.931 9.009 -2 8.218 9.458 8.781 9.214 9.66 8.87 10.738 7.241 8.289 10.029 8.612 6.125 9.38 -1 7.684 9.56 8.75 10.077 9.686 8.27 11.102 7.206 8.13 10.212 8.07 6.018 8.984 -2 8.326 9.696 8.88 9.714 10.014 9.08 11.055 7.256 8.494 10.054 8.63 6.177 9.162 -2 8.906 10.106 9.412 9.704 11.06 9.854 11.335 7.799 10.103 10.471 9.25 6.033 9.97 -1 8.073 9.793 8.626 9.879 9.262 8.408 10.844 7.108 8.368 9.959 8.261 6.052 8.916 -2 8.527 10.026 9.143 9.244 10.597 9.566 11.108 7.778 9.748 10.351 9.153 6.055 9.698 -2 8.614 10.05 9.202 9.508 10.66 9.63 11.156 7.758 9.789 10.324 9.068 6.15 9.948 -2 8.522 10.158 8.992 9.684 9.992 8.55 11.125 7.914 8.976 10.311 8.574 5.889 9.566 -1 8.086 9.6 8.522 9.544 9.641 8.514 10.99 7.386 8.506 10.194 8.234 6.02 8.736 -1 7.873 9.596 8.452 9.422 9.278 8.509 10.958 7.057 8.081 9.981 7.969 6.136 8.958 -2 8.371 9.99 8.949 9.931 10.195 8.935 10.83 7.694 9.183 10.493 9.124 6.128 9.396 -2 8.476 9.982 9.115 9.639 10.465 9.833 11.105 8.058 9.9 10.351 9.182 6.05 9.884 -1 8.512 9.995 8.846 9.951 9.561 8.558 10.769 7.584 8.901 10.139 8.769 5.959 9.203 -1 8.358 9.858 8.99 9.981 10.123 9.368 10.989 7.463 9.327 9.93 8.54 6.02 9.543 -1 8.23 9.614 8.806 9.919 9.939 9.108 11.184 7.766 8.793 10.174 8.605 5.972 9.068 -2 8.238 9.802 8.926 9.595 10.062 8.77 11.202 7.712 9.131 10.34 8.57 6.05 9.464 -1 8.533 10.108 9.083 10.214 10.514 8.463 11.008 7.356 9.344 10.196 8.736 6.262 9.257 -1 7.866 9.444 8.223 9.865 8.95 8.539 10.935 6.754 7.748 10.177 7.826 6.29 8.716 -2 8.888 10.031 9.158 9.407 10.8 9.547 11.238 7.659 9.602 10.398 9.337 6.028 9.529 -1 8.026 9.682 8.398 9.824 9.202 8.041 10.703 7.322 8.352 10.209 8.196 6.009 9.001 -2 8.974 10.071 9.451 9.348 11.061 9.686 11.255 8.077 10.101 10.323 9.557 6.006 10.072 -1 8.181 9.432 9.045 9.544 10.651 9.18 10.832 7.419 8.742 9.818 8.546 6.33 9.201 -1 8.137 9.676 9.024 9.37 10.206 9.944 10.985 7.226 8.9 10.362 8.918 6.352 9.367 - diff --git a/sourcecodes/data/example_chr2_spleen/cuLgraphviz.txt b/sourcecodes/data/example_chr2_spleen/cuLgraphviz.txt deleted file mode 100644 index 824e26d5..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLgraphviz.txt +++ /dev/null @@ -1,32 +0,0 @@ -digraph G { -size="10,10"; ratio = fill; -node [shape=square,width=1.5]; -rs3664317 -> Dhx58; -rs3664317 -> Cd1d1; -rs3664317 -> Ifit1; -rs3664317 -> Oas1g; -rs3664317 -> Ifih1; -Parp9 -> Oas1a; -Dhx58 -> Irf7; -Dhx58 -> Mx1; -Dhx58 -> Ifit1; -Dhx58 -> Trim25; -Dhx58 -> Oas1g; -Cd1d1 -> Oas3; -Cd1d1 -> Trim25; -Cd1d1 -> Pglyrp3; -Oas3 -> Pglyrp3; -Pml -> Oas3; -Pml -> Pglyrp3; -Ifit1 -> Irf7; -Ifit1 -> Mx1; -Trim25 -> Parp9; -Trim25 -> Pml; -Trim25 -> Pglyrp3; -Ifih1 -> Parp9; -Ifih1 -> Dhx58; -Ifih1 -> Cd1d1; -Ifih1 -> Oas3; -Ifih1 -> Ifit1; -Ifih1 -> Trim25; -} \ No newline at end of file diff --git a/sourcecodes/data/example_chr2_spleen/cuLk.txt b/sourcecodes/data/example_chr2_spleen/cuLk.txt deleted file mode 100644 index 29d6383b..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLk.txt +++ /dev/null @@ -1 +0,0 @@ -100 diff --git a/sourcecodes/data/example_chr2_spleen/cuLmap.txt b/sourcecodes/data/example_chr2_spleen/cuLmap.txt deleted file mode 100644 index 9ca8e641..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLmap.txt +++ /dev/null @@ -1,14 +0,0 @@ -rs3664317 0.501140 1.452055 -Oas1a 0.347301 8.281466 -Parp9 0.216211 9.804164 -Dhx58 0.302026 8.891247 -Cd1d1 0.268738 9.643644 -Irf7 0.548579 10.009315 -Oas3 0.548788 8.957397 -Pml 0.190985 11.075425 -Mx1 0.336795 7.483137 -Ifit1 0.569192 8.828521 -Trim25 0.176657 10.255192 -Oas1g 0.458134 8.632151 -Pglyrp3 0.123345 6.070877 -Ifih1 0.387383 9.298137 diff --git a/sourcecodes/data/example_chr2_spleen/cuLmapdata.txt b/sourcecodes/data/example_chr2_spleen/cuLmapdata.txt deleted file mode 100644 index 64d3fc62..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLmapdata.txt +++ /dev/null @@ -1 +0,0 @@ -rs3664317 Ifih1 Cd1d1 Dhx58 Oas1g Trim25 Pml Oas3 Pglyrp3 Parp9 Oas1a Ifit1 Mx1 Irf7 diff --git a/sourcecodes/data/example_chr2_spleen/cuLname.txt b/sourcecodes/data/example_chr2_spleen/cuLname.txt deleted file mode 100644 index 1cc6fe19..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLname.txt +++ /dev/null @@ -1 +0,0 @@ -rs3664317 Oas1a Parp9 Dhx58 Cd1d1 Irf7 Oas3 Pml Mx1 Ifit1 Trim25 Oas1g Pglyrp3 Ifih1 diff --git a/sourcecodes/data/example_chr2_spleen/cuLnet_figure.txt b/sourcecodes/data/example_chr2_spleen/cuLnet_figure.txt deleted file mode 100644 index db0c7cf0..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLnet_figure.txt +++ /dev/null @@ -1,1387 +0,0 @@ -14 -1200 1400 -rs3664317 360 0 -Ifih1 480 175 -Cd1d1 160 350 -Dhx58 560 350 -Oas1g 180 525 -Trim25 480 525 -Pml 0 700 -Oas3 280 875 -Pglyrp3 360 1050 -Parp9 240 700 -Oas1a 680 875 -Ifit1 780 525 -Mx1 480 700 -Irf7 720 700 -rs3664317 2 -250 150 -0 -5 2 3 4 5 12 -1 0.5479 -2 0.4521 -Ifih1 1 -250 150 -1 1 -6 3 4 6 8 10 12 -8.0586 0.0023 -8.0826 0.0028 -8.1066 0.0034 -8.1306 0.0041 -8.1546 0.0050 -8.1787 0.0060 -8.2027 0.0071 -8.2267 0.0085 -8.2507 0.0101 -8.2747 0.0119 -8.2987 0.0140 -8.3227 0.0164 -8.3467 0.0192 -8.3707 0.0223 -8.3947 0.0259 -8.4187 0.0299 -8.4427 0.0343 -8.4667 0.0393 -8.4908 0.0449 -8.5148 0.0510 -8.5388 0.0578 -8.5628 0.0652 -8.5868 0.0733 -8.6108 0.0820 -8.6348 0.0914 -8.6588 0.1015 -8.6828 0.1124 -8.7068 0.1238 -8.7308 0.1359 -8.7548 0.1487 -8.7788 0.1620 -8.8029 0.1758 -8.8269 0.1900 -8.8509 0.2046 -8.8749 0.2195 -8.8989 0.2345 -8.9229 0.2496 -8.9469 0.2647 -8.9709 0.2795 -8.9949 0.2941 -9.0189 0.3082 -9.0429 0.3218 -9.0669 0.3347 -9.0909 0.3467 -9.1150 0.3578 -9.1390 0.3678 -9.1630 0.3766 -9.1870 0.3842 -9.2110 0.3903 -9.2350 0.3951 -9.2590 0.3984 -9.2830 0.4001 -9.3070 0.4003 -9.3310 0.3990 -9.3550 0.3961 -9.3790 0.3917 -9.4030 0.3859 -9.4271 0.3787 -9.4511 0.3702 -9.4751 0.3605 -9.4991 0.3497 -9.5231 0.3379 -9.5471 0.3252 -9.5711 0.3118 -9.5951 0.2978 -9.6191 0.2834 -9.6431 0.2685 -9.6671 0.2535 -9.6911 0.2384 -9.7151 0.2234 -9.7392 0.2084 -9.7632 0.1938 -9.7872 0.1794 -9.8112 0.1655 -9.8352 0.1521 -9.8592 0.1392 -9.8832 0.1269 -9.9072 0.1153 -9.9312 0.1043 -9.9552 0.0940 -9.9792 0.0844 -10.0032 0.0755 -10.0272 0.0672 -10.0513 0.0597 -10.0753 0.0527 -10.0993 0.0464 -10.1233 0.0407 -10.1473 0.0356 -10.1713 0.0310 -10.1953 0.0269 -10.2193 0.0232 -10.2433 0.0200 -10.2673 0.0171 -10.2913 0.0146 -10.3153 0.0124 -10.3393 0.0105 -10.3634 0.0089 -10.3874 0.0075 -10.4114 0.0063 -10.4354 0.0052 -10.4594 0.0043 -Cd1d1 1 -250 150 -2 1 2 -3 6 8 9 -8.7133 0.0010 -8.7310 0.0012 -8.7487 0.0015 -8.7663 0.0019 -8.7840 0.0023 -8.8017 0.0029 -8.8194 0.0035 -8.8371 0.0043 -8.8548 0.0052 -8.8725 0.0064 -8.8902 0.0077 -8.9079 0.0092 -8.9256 0.0110 -8.9433 0.0131 -8.9610 0.0156 -8.9787 0.0184 -8.9964 0.0216 -9.0141 0.0253 -9.0318 0.0295 -9.0495 0.0342 -9.0672 0.0395 -9.0849 0.0455 -9.1025 0.0521 -9.1202 0.0594 -9.1379 0.0674 -9.1556 0.0762 -9.1733 0.0857 -9.1910 0.0960 -9.2087 0.1072 -9.2264 0.1190 -9.2441 0.1316 -9.2618 0.1449 -9.2795 0.1589 -9.2972 0.1734 -9.3149 0.1885 -9.3326 0.2039 -9.3503 0.2197 -9.3680 0.2357 -9.3857 0.2517 -9.4034 0.2677 -9.4211 0.2834 -9.4387 0.2987 -9.4564 0.3135 -9.4741 0.3276 -9.4918 0.3408 -9.5095 0.3530 -9.5272 0.3641 -9.5449 0.3739 -9.5626 0.3823 -9.5803 0.3891 -9.5980 0.3944 -9.6157 0.3980 -9.6334 0.3999 -9.6511 0.4000 -9.6688 0.3984 -9.6865 0.3951 -9.7042 0.3901 -9.7219 0.3835 -9.7396 0.3753 -9.7573 0.3658 -9.7749 0.3549 -9.7926 0.3428 -9.8103 0.3297 -9.8280 0.3158 -9.8457 0.3011 -9.8634 0.2858 -9.8811 0.2702 -9.8988 0.2543 -9.9165 0.2382 -9.9342 0.2223 -9.9519 0.2064 -9.9696 0.1909 -9.9873 0.1758 -10.0050 0.1612 -10.0227 0.1471 -10.0404 0.1337 -10.0581 0.1210 -10.0758 0.1090 -10.0935 0.0978 -10.1111 0.0873 -10.1288 0.0776 -10.1465 0.0687 -10.1642 0.0606 -10.1819 0.0532 -10.1996 0.0465 -10.2173 0.0404 -10.2350 0.0350 -10.2527 0.0302 -10.2704 0.0259 -10.2881 0.0222 -10.3058 0.0189 -10.3235 0.0160 -10.3412 0.0135 -10.3589 0.0113 -10.3766 0.0095 -10.3943 0.0079 -10.4120 0.0066 -10.4297 0.0054 -10.4473 0.0044 -10.4650 0.0036 -10.4827 0.0030 -Dhx58 1 -250 150 -2 1 2 -5 5 6 12 13 14 -7.9210 0.0024 -7.9408 0.0029 -7.9606 0.0035 -7.9804 0.0043 -8.0002 0.0053 -8.0200 0.0064 -8.0398 0.0076 -8.0596 0.0092 -8.0794 0.0110 -8.0992 0.0130 -8.1190 0.0154 -8.1388 0.0182 -8.1586 0.0213 -8.1784 0.0249 -8.1982 0.0290 -8.2180 0.0336 -8.2378 0.0388 -8.2576 0.0446 -8.2774 0.0510 -8.2972 0.0581 -8.3170 0.0659 -8.3368 0.0745 -8.3566 0.0838 -8.3764 0.0938 -8.3962 0.1046 -8.4160 0.1162 -8.4358 0.1284 -8.4556 0.1414 -8.4754 0.1550 -8.4952 0.1692 -8.5150 0.1839 -8.5348 0.1990 -8.5546 0.2145 -8.5744 0.2302 -8.5942 0.2459 -8.6140 0.2617 -8.6338 0.2772 -8.6536 0.2924 -8.6734 0.3071 -8.6932 0.3212 -8.7130 0.3346 -8.7328 0.3469 -8.7526 0.3582 -8.7724 0.3683 -8.7922 0.3771 -8.8120 0.3844 -8.8318 0.3902 -8.8516 0.3944 -8.8714 0.3970 -8.8912 0.3978 -8.9110 0.3970 -8.9308 0.3944 -8.9506 0.3902 -8.9704 0.3845 -8.9902 0.3771 -9.0100 0.3684 -9.0298 0.3583 -9.0496 0.3470 -9.0694 0.3346 -9.0892 0.3213 -9.1090 0.3072 -9.1288 0.2925 -9.1486 0.2773 -9.1684 0.2617 -9.1882 0.2460 -9.2080 0.2302 -9.2278 0.2146 -9.2476 0.1991 -9.2674 0.1840 -9.2872 0.1693 -9.3070 0.1551 -9.3268 0.1415 -9.3466 0.1285 -9.3664 0.1162 -9.3862 0.1047 -9.4060 0.0939 -9.4258 0.0838 -9.4456 0.0745 -9.4654 0.0660 -9.4852 0.0582 -9.5050 0.0510 -9.5248 0.0446 -9.5446 0.0388 -9.5644 0.0337 -9.5842 0.0290 -9.6040 0.0250 -9.6238 0.0213 -9.6436 0.0182 -9.6634 0.0154 -9.6832 0.0130 -9.7030 0.0110 -9.7228 0.0092 -9.7426 0.0077 -9.7624 0.0064 -9.7822 0.0053 -9.8020 0.0043 -9.8218 0.0035 -9.8416 0.0029 -9.8614 0.0024 -9.8812 0.0019 -9.9010 0.0015 -Oas1g 1 -250 150 -2 1 4 -0 -7.0199 0.0009 -7.0513 0.0011 -7.0827 0.0014 -7.1141 0.0018 -7.1456 0.0022 -7.1770 0.0028 -7.2084 0.0034 -7.2398 0.0042 -7.2712 0.0052 -7.3027 0.0063 -7.3341 0.0076 -7.3655 0.0092 -7.3969 0.0111 -7.4284 0.0133 -7.4598 0.0158 -7.4912 0.0187 -7.5226 0.0221 -7.5541 0.0260 -7.5855 0.0304 -7.6169 0.0353 -7.6483 0.0409 -7.6797 0.0472 -7.7112 0.0542 -7.7426 0.0619 -7.7740 0.0704 -7.8054 0.0797 -7.8369 0.0899 -7.8683 0.1008 -7.8997 0.1125 -7.9311 0.1251 -7.9625 0.1383 -7.9940 0.1523 -8.0254 0.1670 -8.0568 0.1822 -8.0882 0.1978 -8.1197 0.2138 -8.1511 0.2300 -8.1825 0.2464 -8.2139 0.2626 -8.2454 0.2787 -8.2768 0.2943 -8.3082 0.3094 -8.3396 0.3238 -8.3710 0.3373 -8.4025 0.3497 -8.4339 0.3609 -8.4653 0.3707 -8.4967 0.3791 -8.5282 0.3858 -8.5596 0.3909 -8.5910 0.3942 -8.6224 0.3956 -8.6538 0.3953 -8.6853 0.3931 -8.7167 0.3891 -8.7481 0.3834 -8.7795 0.3761 -8.8110 0.3672 -8.8424 0.3568 -8.8738 0.3451 -8.9052 0.3323 -8.9366 0.3184 -8.9681 0.3038 -8.9995 0.2884 -9.0309 0.2726 -9.0623 0.2565 -9.0938 0.2401 -9.1252 0.2238 -9.1566 0.2077 -9.1880 0.1918 -9.2195 0.1763 -9.2509 0.1613 -9.2823 0.1469 -9.3137 0.1332 -9.3451 0.1202 -9.3766 0.1080 -9.4080 0.0965 -9.4394 0.0859 -9.4708 0.0761 -9.5023 0.0671 -9.5337 0.0589 -9.5651 0.0514 -9.5965 0.0447 -9.6279 0.0387 -9.6594 0.0334 -9.6908 0.0286 -9.7222 0.0244 -9.7536 0.0208 -9.7851 0.0176 -9.8165 0.0148 -9.8479 0.0124 -9.8793 0.0103 -9.9108 0.0086 -9.9422 0.0071 -9.9736 0.0058 -10.0050 0.0048 -10.0364 0.0039 -10.0679 0.0032 -10.0993 0.0025 -10.1307 0.0020 -10.1621 0.0016 -Trim25 1 -250 150 -3 2 3 4 -3 7 9 10 -9.6413 0.0009 -9.6523 0.0012 -9.6633 0.0014 -9.6743 0.0018 -9.6852 0.0022 -9.6962 0.0026 -9.7072 0.0032 -9.7182 0.0039 -9.7291 0.0047 -9.7401 0.0056 -9.7511 0.0068 -9.7620 0.0081 -9.7730 0.0096 -9.7840 0.0113 -9.7950 0.0133 -9.8059 0.0156 -9.8169 0.0183 -9.8279 0.0213 -9.8389 0.0247 -9.8498 0.0286 -9.8608 0.0329 -9.8718 0.0377 -9.8828 0.0431 -9.8937 0.0490 -9.9047 0.0556 -9.9157 0.0628 -9.9266 0.0706 -9.9376 0.0791 -9.9486 0.0883 -9.9596 0.0982 -9.9705 0.1087 -9.9815 0.1200 -9.9925 0.1319 -10.0035 0.1444 -10.0144 0.1575 -10.0254 0.1711 -10.0364 0.1851 -10.0473 0.1996 -10.0583 0.2144 -10.0693 0.2293 -10.0803 0.2444 -10.0912 0.2594 -10.1022 0.2743 -10.1132 0.2889 -10.1242 0.3031 -10.1351 0.3168 -10.1461 0.3299 -10.1571 0.3422 -10.1681 0.3535 -10.1790 0.3638 -10.1900 0.3730 -10.2010 0.3809 -10.2119 0.3875 -10.2229 0.3927 -10.2339 0.3964 -10.2449 0.3987 -10.2558 0.3993 -10.2668 0.3985 -10.2778 0.3961 -10.2888 0.3922 -10.2997 0.3868 -10.3107 0.3801 -10.3217 0.3720 -10.3327 0.3627 -10.3436 0.3522 -10.3546 0.3408 -10.3656 0.3284 -10.3765 0.3153 -10.3875 0.3015 -10.3985 0.2872 -10.4095 0.2725 -10.4204 0.2576 -10.4314 0.2426 -10.4424 0.2275 -10.4534 0.2126 -10.4643 0.1979 -10.4753 0.1835 -10.4863 0.1695 -10.4972 0.1559 -10.5082 0.1429 -10.5192 0.1304 -10.5302 0.1186 -10.5411 0.1075 -10.5521 0.0970 -10.5631 0.0872 -10.5741 0.0781 -10.5850 0.0696 -10.5960 0.0619 -10.6070 0.0548 -10.6180 0.0483 -10.6289 0.0424 -10.6399 0.0371 -10.6509 0.0323 -10.6618 0.0281 -10.6728 0.0243 -10.6838 0.0209 -10.6948 0.0180 -10.7057 0.0153 -10.7167 0.0131 -10.7277 0.0111 -10.7387 0.0094 -Pml 1 -250 150 -1 6 -2 8 9 -10.2950 0.0001 -10.3083 0.0001 -10.3217 0.0002 -10.3350 0.0002 -10.3483 0.0003 -10.3616 0.0004 -10.3749 0.0005 -10.3883 0.0006 -10.4016 0.0008 -10.4149 0.0010 -10.4282 0.0013 -10.4415 0.0016 -10.4549 0.0020 -10.4682 0.0026 -10.4815 0.0032 -10.4948 0.0040 -10.5081 0.0049 -10.5214 0.0060 -10.5348 0.0073 -10.5481 0.0089 -10.5614 0.0107 -10.5747 0.0129 -10.5880 0.0154 -10.6014 0.0184 -10.6147 0.0218 -10.6280 0.0257 -10.6413 0.0302 -10.6546 0.0353 -10.6680 0.0411 -10.6813 0.0476 -10.6946 0.0548 -10.7079 0.0628 -10.7212 0.0716 -10.7346 0.0813 -10.7479 0.0918 -10.7612 0.1032 -10.7745 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diff --git a/sourcecodes/data/example_chr2_spleen/cuLnet_figure_new.txt b/sourcecodes/data/example_chr2_spleen/cuLnet_figure_new.txt deleted file mode 100644 index 7f631ad5..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLnet_figure_new.txt +++ /dev/null @@ -1,1288 +0,0 @@ -2 -14 -1200 1400 -rs3664317 360 0 -Ifih1 480 175 -Cd1d1 160 350 -Dhx58 560 350 -Oas1g 180 525 -Trim25 480 525 -Pml 0 700 -Oas3 280 875 -Pglyrp3 360 1050 -Parp9 240 700 -Oas1a 680 875 -Ifit1 780 525 -Mx1 480 700 -Irf7 720 700 -rs3664317 2 -250 150 -0 -5 2 3 4 5 12 -1 0.9980 -2 0.0020 -Ifih1 1 -250 150 -1 1 -6 3 4 6 8 10 12 --3.3510 1.0000 -Cd1d1 1 -250 150 -2 1 2 -3 6 8 9 --3.4620 0.0000 --3.3962 0.0000 --3.3304 0.0000 --3.2645 0.0000 --3.1987 0.0000 --3.1328 0.0000 --3.0670 0.0000 --3.0011 0.0000 --2.9353 0.0000 --2.8694 0.0000 --2.8036 0.0000 --2.7378 0.0001 --2.6719 0.0001 --2.6061 0.0001 --2.5402 0.0001 --2.4744 0.0002 --2.4085 0.0002 --2.3427 0.0003 --2.2768 0.0004 --2.2110 0.0006 --2.1452 0.0007 --2.0793 0.0009 --2.0135 0.0012 --1.9476 0.0016 --1.8818 0.0020 --1.8159 0.0026 --1.7501 0.0032 --1.6843 0.0041 --1.6184 0.0051 --1.5526 0.0063 --1.4867 0.0078 --1.4209 0.0097 --1.3550 0.0118 --1.2892 0.0144 --1.2233 0.0175 --1.1575 0.0210 --1.0917 0.0252 --1.0258 0.0300 --0.9600 0.0356 --0.8941 0.0419 --0.8283 0.0491 --0.7624 0.0572 --0.6966 0.0663 --0.6308 0.0765 --0.5649 0.0877 --0.4991 0.1000 --0.4332 0.1133 --0.3674 0.1278 --0.3015 0.1434 --0.2357 0.1599 --0.1698 0.1774 --0.1040 0.1957 --0.0382 0.2147 -0.0277 0.2343 -0.0935 0.2543 -0.1594 0.2744 -0.2252 0.2946 -0.2911 0.3144 -0.3569 0.3338 -0.4227 0.3524 -0.4886 0.3701 -0.5544 0.3865 -0.6203 0.4014 -0.6861 0.4146 -0.7520 0.4259 -0.8178 0.4351 -0.8837 0.4420 -0.9495 0.4466 -1.0153 0.4488 -1.0812 0.4485 -1.1470 0.4458 -1.2129 0.4407 -1.2787 0.4332 -1.3446 0.4236 -1.4104 0.4118 -1.4763 0.3983 -1.5421 0.3830 -1.6079 0.3663 -1.6738 0.3484 -1.7396 0.3296 -1.8055 0.3101 -1.8713 0.2902 -1.9372 0.2700 -2.0030 0.2499 -2.0688 0.2300 -2.1347 0.2105 -2.2005 0.1916 -2.2664 0.1735 -2.3322 0.1562 -2.3981 0.1399 -2.4639 0.1246 -2.5298 0.1103 -2.5956 0.0972 -2.6614 0.0851 -2.7273 0.0742 -2.7931 0.0643 -2.8590 0.0554 -2.9248 0.0474 -2.9907 0.0404 -3.0565 0.0343 -3.1223 0.0289 -Dhx58 1 -250 150 -2 1 2 -5 5 6 12 13 14 --3.2125 0.2772 --3.1470 0.3638 --3.0814 0.4631 --3.0159 0.5716 --2.9503 0.6843 --2.8848 0.7945 --2.8192 0.8946 --2.7536 0.9769 --2.6881 1.0347 --2.6225 1.0628 --2.5570 1.0587 --2.4914 1.0228 --2.4258 0.9583 --2.3603 0.8708 --2.2947 0.7674 --2.2292 0.6559 --2.1636 0.5437 --2.0980 0.4371 --2.0325 0.3408 --1.9669 0.2577 --1.9014 0.1890 --1.8358 0.1344 --1.7702 0.0927 --1.7047 0.0620 --1.6391 0.0402 --1.5736 0.0253 --1.5080 0.0154 --1.4425 0.0091 --1.3769 0.0052 --1.3113 0.0029 --1.2458 0.0016 --1.1802 0.0008 --1.1147 0.0004 --1.0491 0.0002 --0.9835 0.0001 --0.9180 0.0000 --0.8524 0.0000 --0.7869 0.0000 --0.7213 0.0000 --0.6557 0.0000 --0.5902 0.0000 --0.5246 0.0000 --0.4591 0.0000 --0.3935 0.0000 --0.3280 0.0000 --0.2624 0.0000 --0.1968 0.0000 --0.1313 0.0000 --0.0657 0.0000 --0.0002 0.0000 -0.0654 0.0000 -0.1310 0.0000 -0.1965 0.0000 -0.2621 0.0000 -0.3276 0.0000 -0.3932 0.0000 -0.4588 0.0000 -0.5243 0.0000 -0.5899 0.0000 -0.6554 0.0000 -0.7210 0.0000 -0.7866 0.0000 -0.8521 0.0000 -0.9177 0.0000 -0.9832 0.0000 -1.0488 0.0000 -1.1143 0.0000 -1.1799 0.0000 -1.2455 0.0000 -1.3110 0.0000 -1.3766 0.0000 -1.4421 0.0000 -1.5077 0.0000 -1.5733 0.0000 -1.6388 0.0000 -1.7044 0.0000 -1.7699 0.0000 -1.8355 0.0000 -1.9011 0.0000 -1.9666 0.0000 -2.0322 0.0000 -2.0977 0.0000 -2.1633 0.0000 -2.2288 0.0000 -2.2944 0.0000 -2.3600 0.0000 -2.4255 0.0000 -2.4911 0.0000 -2.5566 0.0000 -2.6222 0.0000 -2.6878 0.0000 -2.7533 0.0000 -2.8189 0.0000 -2.8844 0.0000 -2.9500 0.0000 -3.0156 0.0000 -3.0811 0.0000 -3.1467 0.0000 -3.2122 0.0000 -3.2778 0.0000 -3.3434 0.0000 -Oas1g 1 -250 150 -2 1 4 -0 --3.5192 0.0005 --3.4507 0.0009 --3.3821 0.0017 --3.3135 0.0030 --3.2449 0.0053 --3.1763 0.0090 --3.1077 0.0148 --3.0391 0.0238 --2.9705 0.0371 --2.9019 0.0562 --2.8334 0.0829 --2.7648 0.1187 --2.6962 0.1652 --2.6276 0.2236 --2.5590 0.2943 --2.4904 0.3764 --2.4218 0.4681 --2.3532 0.5659 --2.2847 0.6652 --2.2161 0.7600 --2.1475 0.8442 --2.0789 0.9116 --2.0103 0.9570 --1.9417 0.9767 --1.8731 0.9691 --1.8045 0.9347 --1.7359 0.8764 --1.6674 0.7989 --1.5988 0.7080 --1.5302 0.6100 --1.4616 0.5109 --1.3930 0.4159 --1.3244 0.3292 --1.2558 0.2533 --1.1872 0.1895 --1.1186 0.1378 --1.0501 0.0974 --0.9815 0.0670 --0.9129 0.0448 --0.8443 0.0291 --0.7757 0.0184 --0.7071 0.0113 --0.6385 0.0067 --0.5699 0.0039 --0.5014 0.0022 --0.4328 0.0012 --0.3642 0.0006 --0.2956 0.0003 --0.2270 0.0002 --0.1584 0.0001 --0.0898 0.0000 --0.0212 0.0000 -0.0474 0.0000 -0.1159 0.0000 -0.1845 0.0000 -0.2531 0.0000 -0.3217 0.0000 -0.3903 0.0000 -0.4589 0.0000 -0.5275 0.0000 -0.5961 0.0000 -0.6646 0.0000 -0.7332 0.0000 -0.8018 0.0000 -0.8704 0.0000 -0.9390 0.0000 -1.0076 0.0000 -1.0762 0.0000 -1.1448 0.0000 -1.2134 0.0000 -1.2819 0.0000 -1.3505 0.0000 -1.4191 0.0000 -1.4877 0.0000 -1.5563 0.0000 -1.6249 0.0000 -1.6935 0.0000 -1.7621 0.0000 -1.8307 0.0000 -1.8992 0.0000 -1.9678 0.0000 -2.0364 0.0000 -2.1050 0.0000 -2.1736 0.0000 -2.2422 0.0000 -2.3108 0.0000 -2.3794 0.0000 -2.4479 0.0000 -2.5165 0.0000 -2.5851 0.0000 -2.6537 0.0000 -2.7223 0.0000 -2.7909 0.0000 -2.8595 0.0000 -2.9281 0.0000 -2.9967 0.0000 -3.0652 0.0000 -3.1338 0.0000 -3.2024 0.0000 -3.2710 0.0000 -3.3396 0.0000 -Trim25 1 -250 150 -3 2 3 4 -3 7 9 10 --3.4748 0.0273 --3.4127 0.0331 --3.3506 0.0400 --3.2885 0.0479 --3.2263 0.0570 --3.1642 0.0675 --3.1021 0.0792 --3.0400 0.0925 --2.9779 0.1072 --2.9158 0.1235 --2.8536 0.1413 --2.7915 0.1606 --2.7294 0.1814 --2.6673 0.2034 --2.6052 0.2267 --2.5431 0.2510 --2.4810 0.2760 --2.4188 0.3015 --2.3567 0.3273 --2.2946 0.3528 --2.2325 0.3779 --2.1704 0.4021 --2.1083 0.4250 --2.0461 0.4463 --1.9840 0.4655 --1.9219 0.4824 --1.8598 0.4966 --1.7977 0.5078 --1.7356 0.5159 --1.6735 0.5207 --1.6113 0.5220 --1.5492 0.5199 --1.4871 0.5144 --1.4250 0.5056 --1.3629 0.4937 --1.3008 0.4789 --1.2386 0.4615 --1.1765 0.4417 --1.1144 0.4201 --1.0523 0.3969 --0.9902 0.3724 --0.9281 0.3472 --0.8660 0.3216 --0.8038 0.2959 --0.7417 0.2705 --0.6796 0.2456 --0.6175 0.2215 --0.5554 0.1985 --0.4933 0.1767 --0.4311 0.1562 --0.3690 0.1373 --0.3069 0.1198 --0.2448 0.1039 --0.1827 0.0894 --0.1206 0.0765 --0.0585 0.0650 -0.0037 0.0549 -0.0658 0.0461 -0.1279 0.0384 -0.1900 0.0318 -0.2521 0.0261 -0.3142 0.0213 -0.3764 0.0173 -0.4385 0.0140 -0.5006 0.0112 -0.5627 0.0089 -0.6248 0.0070 -0.6869 0.0055 -0.7490 0.0043 -0.8112 0.0033 -0.8733 0.0026 -0.9354 0.0020 -0.9975 0.0015 -1.0596 0.0011 -1.1217 0.0008 -1.1839 0.0006 -1.2460 0.0005 -1.3081 0.0003 -1.3702 0.0002 -1.4323 0.0002 -1.4944 0.0001 -1.5565 0.0001 -1.6187 0.0001 -1.6808 0.0000 -1.7429 0.0000 -1.8050 0.0000 -1.8671 0.0000 -1.9292 0.0000 -1.9914 0.0000 -2.0535 0.0000 -2.1156 0.0000 -2.1777 0.0000 -2.2398 0.0000 -2.3019 0.0000 -2.3640 0.0000 -2.4262 0.0000 -2.4883 0.0000 -2.5504 0.0000 -2.6125 0.0000 -2.6746 0.0000 -2.7367 0.0000 -Pml 1 -250 150 -1 6 -2 8 9 --4.0862 0.0013 --4.0165 0.0017 --3.9468 0.0022 --3.8770 0.0028 --3.8073 0.0036 --3.7375 0.0045 --3.6678 0.0057 --3.5980 0.0071 --3.5283 0.0088 --3.4586 0.0108 --3.3888 0.0133 --3.3191 0.0162 --3.2493 0.0196 --3.1796 0.0236 --3.1098 0.0283 --3.0401 0.0337 --2.9704 0.0399 --2.9006 0.0470 --2.8309 0.0550 --2.7611 0.0640 --2.6914 0.0741 --2.6217 0.0852 --2.5519 0.0975 --2.4822 0.1109 --2.4124 0.1254 --2.3427 0.1409 --2.2729 0.1575 --2.2032 0.1750 --2.1335 0.1934 --2.0637 0.2124 --1.9940 0.2320 --1.9242 0.2519 --1.8545 0.2720 --1.7847 0.2919 --1.7150 0.3115 --1.6453 0.3305 --1.5755 0.3487 --1.5058 0.3657 --1.4360 0.3814 --1.3663 0.3954 --1.2966 0.4075 --1.2268 0.4177 --1.1571 0.4256 --1.0873 0.4311 --1.0176 0.4343 --0.9478 0.4349 --0.8781 0.4330 --0.8084 0.4286 --0.7386 0.4218 --0.6689 0.4128 --0.5991 0.4016 --0.5294 0.3884 --0.4596 0.3736 --0.3899 0.3572 --0.3202 0.3395 --0.2504 0.3209 --0.1807 0.3016 --0.1109 0.2818 --0.0412 0.2617 -0.0286 0.2417 -0.0983 0.2220 -0.1680 0.2026 -0.2378 0.1839 -0.3075 0.1660 -0.3773 0.1489 -0.4470 0.1328 -0.5167 0.1178 -0.5865 0.1039 -0.6562 0.0911 -0.7260 0.0794 -0.7957 0.0688 -0.8655 0.0593 -0.9352 0.0508 -1.0049 0.0433 -1.0747 0.0366 -1.1444 0.0308 -1.2142 0.0258 -1.2839 0.0215 -1.3537 0.0178 -1.4234 0.0146 -1.4931 0.0120 -1.5629 0.0097 -1.6326 0.0079 -1.7024 0.0063 -1.7721 0.0051 -1.8418 0.0040 -1.9116 0.0032 -1.9813 0.0025 -2.0511 0.0019 -2.1208 0.0015 -2.1906 0.0012 -2.2603 0.0009 -2.3300 0.0007 -2.3998 0.0005 -2.4695 0.0004 -2.5393 0.0003 -2.6090 0.0002 -2.6788 0.0002 -2.7485 0.0001 -2.8182 0.0001 -2.8880 0.0001 -Oas3 1 -250 150 -3 2 3 7 -1 9 --3.0744 0.1968 --3.0125 0.2591 --2.9506 0.3326 --2.8888 0.4165 --2.8269 0.5085 --2.7650 0.6055 --2.7031 0.7031 --2.6413 0.7962 --2.5794 0.8793 --2.5175 0.9470 --2.4556 0.9947 --2.3938 1.0188 --2.3319 1.0177 --2.2700 0.9913 --2.2081 0.9417 --2.1463 0.8724 --2.0844 0.7882 --2.0225 0.6945 --1.9606 0.5967 --1.8988 0.5000 --1.8369 0.4086 --1.7750 0.3256 --1.7132 0.2531 --1.6513 0.1918 --1.5894 0.1418 --1.5275 0.1022 --1.4657 0.0718 --1.4038 0.0492 --1.3419 0.0329 --1.2800 0.0215 --1.2182 0.0136 --1.1563 0.0085 --1.0944 0.0051 --1.0325 0.0030 --0.9707 0.0017 --0.9088 0.0010 --0.8469 0.0005 --0.7850 0.0003 --0.7232 0.0001 --0.6613 0.0001 --0.5994 0.0000 --0.5375 0.0000 --0.4757 0.0000 --0.4138 0.0000 --0.3519 0.0000 --0.2901 0.0000 --0.2282 0.0000 --0.1663 0.0000 --0.1044 0.0000 --0.0426 0.0000 -0.0193 0.0000 -0.0812 0.0000 -0.1431 0.0000 -0.2049 0.0000 -0.2668 0.0000 -0.3287 0.0000 -0.3906 0.0000 -0.4524 0.0000 -0.5143 0.0000 -0.5762 0.0000 -0.6381 0.0000 -0.6999 0.0000 -0.7618 0.0000 -0.8237 0.0000 -0.8856 0.0000 -0.9474 0.0000 -1.0093 0.0000 -1.0712 0.0000 -1.1331 0.0000 -1.1949 0.0000 -1.2568 0.0000 -1.3187 0.0000 -1.3805 0.0000 -1.4424 0.0000 -1.5043 0.0000 -1.5662 0.0000 -1.6280 0.0000 -1.6899 0.0000 -1.7518 0.0000 -1.8137 0.0000 -1.8755 0.0000 -1.9374 0.0000 -1.9993 0.0000 -2.0612 0.0000 -2.1230 0.0000 -2.1849 0.0000 -2.2468 0.0000 -2.3087 0.0000 -2.3705 0.0000 -2.4324 0.0000 -2.4943 0.0000 -2.5562 0.0000 -2.6180 0.0000 -2.6799 0.0000 -2.7418 0.0000 -2.8037 0.0000 -2.8655 0.0000 -2.9274 0.0000 -2.9893 0.0000 -3.0511 0.0000 -3.1130 0.0000 -Pglyrp3 1 -250 150 -4 3 6 7 8 -0 --3.5690 0.0027 --3.5005 0.0034 --3.4321 0.0041 --3.3636 0.0050 --3.2951 0.0061 --3.2266 0.0074 --3.1581 0.0089 --3.0897 0.0106 --3.0212 0.0127 --2.9527 0.0150 --2.8842 0.0178 --2.8157 0.0209 --2.7472 0.0245 --2.6788 0.0285 --2.6103 0.0331 --2.5418 0.0383 --2.4733 0.0441 --2.4048 0.0505 --2.3364 0.0576 --2.2679 0.0655 --2.1994 0.0740 --2.1309 0.0833 --2.0624 0.0934 --1.9939 0.1042 --1.9255 0.1158 --1.8570 0.1281 --1.7885 0.1411 --1.7200 0.1547 --1.6515 0.1689 --1.5831 0.1835 --1.5146 0.1986 --1.4461 0.2140 --1.3776 0.2295 --1.3091 0.2450 --1.2406 0.2605 --1.1722 0.2757 --1.1037 0.2906 --1.0352 0.3049 --0.9667 0.3185 --0.8982 0.3312 --0.8298 0.3429 --0.7613 0.3535 --0.6928 0.3628 --0.6243 0.3707 --0.5558 0.3771 --0.4873 0.3819 --0.4189 0.3851 --0.3504 0.3866 --0.2819 0.3865 --0.2134 0.3846 --0.1449 0.3810 --0.0765 0.3758 --0.0080 0.3691 -0.0605 0.3609 -0.1290 0.3513 -0.1975 0.3404 -0.2660 0.3285 -0.3344 0.3155 -0.4029 0.3018 -0.4714 0.2874 -0.5399 0.2724 -0.6084 0.2571 -0.6769 0.2416 -0.7453 0.2261 -0.8138 0.2106 -0.8823 0.1953 -0.9508 0.1803 -1.0193 0.1657 -1.0877 0.1517 -1.1562 0.1382 -1.2247 0.1254 -1.2932 0.1132 -1.3617 0.1018 -1.4302 0.0911 -1.4986 0.0812 -1.5671 0.0721 -1.6356 0.0637 -1.7041 0.0560 -1.7726 0.0490 -1.8410 0.0428 -1.9095 0.0371 -1.9780 0.0321 -2.0465 0.0276 -2.1150 0.0236 -2.1835 0.0202 -2.2519 0.0171 -2.3204 0.0145 -2.3889 0.0122 -2.4574 0.0102 -2.5259 0.0085 -2.5943 0.0071 -2.6628 0.0058 -2.7313 0.0048 -2.7998 0.0039 -2.8683 0.0032 -2.9368 0.0026 -3.0052 0.0021 -3.0737 0.0017 -3.1422 0.0014 -3.2107 0.0011 -3.2792 0.0009 -Parp9 1 -250 150 -2 2 6 -1 11 --2.7999 0.3911 --2.7399 0.4346 --2.6799 0.4778 --2.6199 0.5196 --2.5599 0.5590 --2.4999 0.5949 --2.4399 0.6263 --2.3799 0.6523 --2.3199 0.6721 --2.2599 0.6850 --2.1999 0.6907 --2.1398 0.6890 --2.0798 0.6798 --2.0198 0.6636 --1.9598 0.6408 --1.8998 0.6122 --1.8398 0.5785 --1.7798 0.5408 --1.7198 0.5002 --1.6598 0.4576 --1.5998 0.4141 --1.5398 0.3708 --1.4798 0.3284 --1.4198 0.2878 --1.3598 0.2494 --1.2997 0.2139 --1.2397 0.1814 --1.1797 0.1522 --1.1197 0.1264 --1.0597 0.1038 --0.9997 0.0843 --0.9397 0.0678 --0.8797 0.0539 --0.8197 0.0424 --0.7597 0.0330 --0.6997 0.0254 --0.6397 0.0193 --0.5797 0.0145 --0.5197 0.0108 --0.4596 0.0080 --0.3996 0.0058 --0.3396 0.0042 --0.2796 0.0030 --0.2196 0.0021 --0.1596 0.0015 --0.0996 0.0010 --0.0396 0.0007 -0.0204 0.0005 -0.0804 0.0003 -0.1404 0.0002 -0.2004 0.0001 -0.2604 0.0001 -0.3204 0.0001 -0.3805 0.0000 -0.4405 0.0000 -0.5005 0.0000 -0.5605 0.0000 -0.6205 0.0000 -0.6805 0.0000 -0.7405 0.0000 -0.8005 0.0000 -0.8605 0.0000 -0.9205 0.0000 -0.9805 0.0000 -1.0405 0.0000 -1.1005 0.0000 -1.1605 0.0000 -1.2206 0.0000 -1.2806 0.0000 -1.3406 0.0000 -1.4006 0.0000 -1.4606 0.0000 -1.5206 0.0000 -1.5806 0.0000 -1.6406 0.0000 -1.7006 0.0000 -1.7606 0.0000 -1.8206 0.0000 -1.8806 0.0000 -1.9406 0.0000 -2.0006 0.0000 -2.0607 0.0000 -2.1207 0.0000 -2.1807 0.0000 -2.2407 0.0000 -2.3007 0.0000 -2.3607 0.0000 -2.4207 0.0000 -2.4807 0.0000 -2.5407 0.0000 -2.6007 0.0000 -2.6607 0.0000 -2.7207 0.0000 -2.7807 0.0000 -2.8407 0.0000 -2.9008 0.0000 -2.9608 0.0000 -3.0208 0.0000 -3.0808 0.0000 -3.1408 0.0000 -3.2008 0.0000 -Oas1a 1 -250 150 -1 10 -0 --3.0946 0.0747 --3.0304 0.0873 --2.9662 0.1013 --2.9019 0.1168 --2.8377 0.1338 --2.7735 0.1522 --2.7093 0.1720 --2.6450 0.1932 --2.5808 0.2155 --2.5166 0.2388 --2.4524 0.2629 --2.3881 0.2875 --2.3239 0.3124 --2.2597 0.3371 --2.1955 0.3615 --2.1312 0.3850 --2.0670 0.4074 --2.0028 0.4282 --1.9385 0.4472 --1.8743 0.4639 --1.8101 0.4780 --1.7459 0.4894 --1.6816 0.4977 --1.6174 0.5029 --1.5532 0.5047 --1.4890 0.5032 --1.4247 0.4985 --1.3605 0.4905 --1.2963 0.4795 --1.2320 0.4656 --1.1678 0.4492 --1.1036 0.4304 --1.0394 0.4098 --0.9751 0.3876 --0.9109 0.3642 --0.8467 0.3399 --0.7825 0.3152 --0.7182 0.2903 --0.6540 0.2656 --0.5898 0.2415 --0.5256 0.2181 --0.4613 0.1956 --0.3971 0.1744 --0.3329 0.1544 --0.2686 0.1358 --0.2044 0.1186 --0.1402 0.1030 --0.0760 0.0888 --0.0117 0.0761 -0.0525 0.0647 -0.1167 0.0547 -0.1809 0.0459 -0.2452 0.0383 -0.3094 0.0318 -0.3736 0.0262 -0.4378 0.0214 -0.5021 0.0174 -0.5663 0.0140 -0.6305 0.0113 -0.6948 0.0090 -0.7590 0.0071 -0.8232 0.0056 -0.8874 0.0044 -0.9517 0.0034 -1.0159 0.0026 -1.0801 0.0020 -1.1443 0.0015 -1.2086 0.0011 -1.2728 0.0009 -1.3370 0.0006 -1.4012 0.0005 -1.4655 0.0003 -1.5297 0.0003 -1.5939 0.0002 -1.6582 0.0001 -1.7224 0.0001 -1.7866 0.0001 -1.8508 0.0000 -1.9151 0.0000 -1.9793 0.0000 -2.0435 0.0000 -2.1077 0.0000 -2.1720 0.0000 -2.2362 0.0000 -2.3004 0.0000 -2.3646 0.0000 -2.4289 0.0000 -2.4931 0.0000 -2.5573 0.0000 -2.6216 0.0000 -2.6858 0.0000 -2.7500 0.0000 -2.8142 0.0000 -2.8785 0.0000 -2.9427 0.0000 -3.0069 0.0000 -3.0711 0.0000 -3.1354 0.0000 -3.1996 0.0000 -3.2638 0.0000 -3.3280 0.0000 -Ifit1 1 -250 150 -3 1 2 4 -2 13 14 --2.8983 0.9160 --2.8370 1.0549 --2.7756 1.1688 --2.7142 1.2459 --2.6528 1.2777 --2.5915 1.2606 --2.5301 1.1965 --2.4687 1.0926 --2.4073 0.9599 --2.3460 0.8113 --2.2846 0.6598 --2.2232 0.5161 --2.1618 0.3885 --2.1005 0.2813 --2.0391 0.1960 --1.9777 0.1313 --1.9164 0.0847 --1.8550 0.0525 --1.7936 0.0313 --1.7322 0.0180 --1.6709 0.0099 --1.6095 0.0053 --1.5481 0.0027 --1.4867 0.0013 --1.4254 0.0006 --1.3640 0.0003 --1.3026 0.0001 --1.2412 0.0001 --1.1799 0.0000 --1.1185 0.0000 --1.0571 0.0000 --0.9957 0.0000 --0.9344 0.0000 --0.8730 0.0000 --0.8116 0.0000 --0.7502 0.0000 --0.6889 0.0000 --0.6275 0.0000 --0.5661 0.0000 --0.5047 0.0000 --0.4434 0.0000 --0.3820 0.0000 --0.3206 0.0000 --0.2592 0.0000 --0.1979 0.0000 --0.1365 0.0000 --0.0751 0.0000 --0.0137 0.0000 -0.0476 0.0000 -0.1090 0.0000 -0.1704 0.0000 -0.2318 0.0000 -0.2931 0.0000 -0.3545 0.0000 -0.4159 0.0000 -0.4773 0.0000 -0.5386 0.0000 -0.6000 0.0000 -0.6614 0.0000 -0.7228 0.0000 -0.7841 0.0000 -0.8455 0.0000 -0.9069 0.0000 -0.9682 0.0000 -1.0296 0.0000 -1.0910 0.0000 -1.1524 0.0000 -1.2137 0.0000 -1.2751 0.0000 -1.3365 0.0000 -1.3979 0.0000 -1.4592 0.0000 -1.5206 0.0000 -1.5820 0.0000 -1.6434 0.0000 -1.7047 0.0000 -1.7661 0.0000 -1.8275 0.0000 -1.8889 0.0000 -1.9502 0.0000 -2.0116 0.0000 -2.0730 0.0000 -2.1344 0.0000 -2.1957 0.0000 -2.2571 0.0000 -2.3185 0.0000 -2.3799 0.0000 -2.4412 0.0000 -2.5026 0.0000 -2.5640 0.0000 -2.6254 0.0000 -2.6867 0.0000 -2.7481 0.0000 -2.8095 0.0000 -2.8709 0.0000 -2.9322 0.0000 -2.9936 0.0000 -3.0550 0.0000 -3.1164 0.0000 -3.1777 0.0000 -3.2391 0.0000 -Mx1 1 -250 150 -2 4 12 -0 --3.1709 0.1330 --3.0983 0.1643 --3.0258 0.2000 --2.9533 0.2398 --2.8808 0.2834 --2.8082 0.3299 --2.7357 0.3785 --2.6632 0.4278 --2.5907 0.4764 --2.5181 0.5228 --2.4456 0.5653 --2.3731 0.6022 --2.3006 0.6321 --2.2280 0.6538 --2.1555 0.6662 --2.0830 0.6690 --2.0105 0.6619 --1.9379 0.6452 --1.8654 0.6197 --1.7929 0.5865 --1.7204 0.5469 --1.6479 0.5024 --1.5753 0.4548 --1.5028 0.4057 --1.4303 0.3566 --1.3578 0.3088 --1.2852 0.2635 --1.2127 0.2215 --1.1402 0.1835 --1.0677 0.1497 --0.9951 0.1204 --0.9226 0.0954 --0.8501 0.0745 --0.7776 0.0573 --0.7050 0.0434 --0.6325 0.0324 --0.5600 0.0239 --0.4875 0.0173 --0.4149 0.0124 --0.3424 0.0087 --0.2699 0.0060 --0.1974 0.0041 --0.1248 0.0028 --0.0523 0.0018 -0.0202 0.0012 -0.0927 0.0008 -0.1653 0.0005 -0.2378 0.0003 -0.3103 0.0002 -0.3828 0.0001 -0.4554 0.0001 -0.5279 0.0000 -0.6004 0.0000 -0.6729 0.0000 -0.7455 0.0000 -0.8180 0.0000 -0.8905 0.0000 -0.9630 0.0000 -1.0356 0.0000 -1.1081 0.0000 -1.1806 0.0000 -1.2531 0.0000 -1.3257 0.0000 -1.3982 0.0000 -1.4707 0.0000 -1.5432 0.0000 -1.6158 0.0000 -1.6883 0.0000 -1.7608 0.0000 -1.8333 0.0000 -1.9059 0.0000 -1.9784 0.0000 -2.0509 0.0000 -2.1234 0.0000 -2.1959 0.0000 -2.2685 0.0000 -2.3410 0.0000 -2.4135 0.0000 -2.4860 0.0000 -2.5586 0.0000 -2.6311 0.0000 -2.7036 0.0000 -2.7761 0.0000 -2.8487 0.0000 -2.9212 0.0000 -2.9937 0.0000 -3.0662 0.0000 -3.1388 0.0000 -3.2113 0.0000 -3.2838 0.0000 -3.3563 0.0000 -3.4289 0.0000 -3.5014 0.0000 -3.5739 0.0000 -3.6464 0.0000 -3.7190 0.0000 -3.7915 0.0000 -3.8640 0.0000 -3.9365 0.0000 -4.0091 0.0000 -4.0816 0.0000 -Irf7 1 -250 150 -2 4 12 -0 --3.9154 0.0040 --3.8440 0.0068 --3.7726 0.0113 --3.7012 0.0181 --3.6298 0.0282 --3.5583 0.0429 --3.4869 0.0635 --3.4155 0.0916 --3.3441 0.1284 --3.2727 0.1753 --3.2013 0.2330 --3.1299 0.3015 --3.0585 0.3798 --2.9871 0.4657 --2.9157 0.5560 --2.8443 0.6461 --2.7729 0.7310 --2.7015 0.8051 --2.6301 0.8632 --2.5587 0.9010 --2.4873 0.9155 --2.4159 0.9056 --2.3445 0.8721 --2.2730 0.8175 --2.2016 0.7461 --2.1302 0.6628 --2.0588 0.5732 --1.9874 0.4827 --1.9160 0.3956 --1.8446 0.3157 --1.7732 0.2452 --1.7018 0.1854 --1.6304 0.1365 --1.5590 0.0978 --1.4876 0.0682 --1.4162 0.0463 --1.3448 0.0306 --1.2734 0.0197 --1.2020 0.0124 --1.1306 0.0075 --1.0592 0.0045 --0.9878 0.0026 --0.9163 0.0015 --0.8449 0.0008 --0.7735 0.0004 --0.7021 0.0002 --0.6307 0.0001 --0.5593 0.0001 --0.4879 0.0000 --0.4165 0.0000 --0.3451 0.0000 --0.2737 0.0000 --0.2023 0.0000 --0.1309 0.0000 --0.0595 0.0000 -0.0119 0.0000 -0.0833 0.0000 -0.1547 0.0000 -0.2261 0.0000 -0.2975 0.0000 -0.3690 0.0000 -0.4404 0.0000 -0.5118 0.0000 -0.5832 0.0000 -0.6546 0.0000 -0.7260 0.0000 -0.7974 0.0000 -0.8688 0.0000 -0.9402 0.0000 -1.0116 0.0000 -1.0830 0.0000 -1.1544 0.0000 -1.2258 0.0000 -1.2972 0.0000 -1.3686 0.0000 -1.4400 0.0000 -1.5114 0.0000 -1.5828 0.0000 -1.6543 0.0000 -1.7257 0.0000 -1.7971 0.0000 -1.8685 0.0000 -1.9399 0.0000 -2.0113 0.0000 -2.0827 0.0000 -2.1541 0.0000 -2.2255 0.0000 -2.2969 0.0000 -2.3683 0.0000 -2.4397 0.0000 -2.5111 0.0000 -2.5825 0.0000 -2.6539 0.0000 -2.7253 0.0000 -2.7967 0.0000 -2.8681 0.0000 -2.9396 0.0000 -3.0110 0.0000 -3.0824 0.0000 -3.1538 0.0000 -3.2252 0.0000 diff --git a/sourcecodes/data/example_chr2_spleen/cuLnlevels.txt b/sourcecodes/data/example_chr2_spleen/cuLnlevels.txt deleted file mode 100644 index 605579c3..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLnlevels.txt +++ /dev/null @@ -1,2 +0,0 @@ -rs3664317 1 2 - diff --git a/sourcecodes/data/example_chr2_spleen/cuLnnode.txt b/sourcecodes/data/example_chr2_spleen/cuLnnode.txt deleted file mode 100644 index 8351c193..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLnnode.txt +++ /dev/null @@ -1 +0,0 @@ -14 diff --git a/sourcecodes/data/example_chr2_spleen/cuLnrows.txt b/sourcecodes/data/example_chr2_spleen/cuLnrows.txt deleted file mode 100644 index fff0a247..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLnrows.txt +++ /dev/null @@ -1 +0,0 @@ -74 diff --git a/sourcecodes/data/example_chr2_spleen/cuLparameters.txt b/sourcecodes/data/example_chr2_spleen/cuLparameters.txt deleted file mode 100644 index 545d6e91..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLparameters.txt +++ /dev/null @@ -1,57 +0,0 @@ -rs3664317 -Discrete node with 2 states -1 0.5479 -2 0.4521 - -Oas1a -Continuous node -8.2815 0.3487 - -Parp9 -Continuous node -9.8042 0.2165 - -Dhx58 -Continuous node -8.8912 0.3029 - -Cd1d1 -Continuous node -9.6436 0.2679 - -Irf7 -Continuous node -10.0093 0.5542 - -Oas3 -Continuous node -8.9574 0.5062 - -Pml -Continuous node -11.0754 0.1911 - -Mx1 -Continuous node -7.4831 0.3389 - -Ifit1 -Continuous node -8.8285 0.5736 - -Trim25 -Continuous node -10.2552 0.1765 - -Oas1g -Continuous node -8.6322 0.4619 - -Pglyrp3 -Continuous node -6.0709 0.1286 - -Ifih1 -Continuous node -9.2981 0.3860 - diff --git a/sourcecodes/data/example_chr2_spleen/cuLparent.txt b/sourcecodes/data/example_chr2_spleen/cuLparent.txt deleted file mode 100644 index b8626c4c..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLparent.txt +++ /dev/null @@ -1 +0,0 @@ -4 diff --git a/sourcecodes/data/example_chr2_spleen/cuLstructure_old.txt b/sourcecodes/data/example_chr2_spleen/cuLstructure_old.txt deleted file mode 100644 index f0815c7a..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLstructure_old.txt +++ /dev/null @@ -1,14 +0,0 @@ -rs3664317 0.5479 0.4521 -Dhx58 0.0024 0.0029 0.0035 0.0043 0.0053 0.0064 0.0076 0.0092 0.0110 0.0130 0.0154 0.0182 0.0213 0.0249 0.0290 0.0336 0.0388 0.0446 0.0510 0.0581 0.0659 0.0745 0.0838 0.0938 0.1046 0.1162 0.1284 0.1414 0.1550 0.1692 0.1839 0.1990 0.2145 0.2302 0.2459 0.2617 0.2772 0.2924 0.3071 0.3212 0.3346 0.3469 0.3582 0.3683 0.3771 0.3844 0.3902 0.3944 0.3970 0.3978 0.3970 0.3944 0.3902 0.3845 0.3771 0.3684 0.3583 0.3470 0.3346 0.3213 0.3072 0.2925 0.2773 0.2617 0.2460 0.2302 0.2146 0.1991 0.1840 0.1693 0.1551 0.1415 0.1285 0.1162 0.1047 0.0939 0.0838 0.0745 0.0660 0.0582 0.0510 0.0446 0.0388 0.0337 0.0290 0.0250 0.0213 0.0182 0.0154 0.0130 0.0110 0.0092 0.0077 0.0064 0.0053 0.0043 0.0035 0.0029 0.0024 0.0019 0.0015 -Cd1d1 0.0010 0.0012 0.0015 0.0019 0.0023 0.0029 0.0035 0.0043 0.0052 0.0064 0.0077 0.0092 0.0110 0.0131 0.0156 0.0184 0.0216 0.0253 0.0295 0.0342 0.0395 0.0455 0.0521 0.0594 0.0674 0.0762 0.0857 0.0960 0.1072 0.1190 0.1316 0.1449 0.1589 0.1734 0.1885 0.2039 0.2197 0.2357 0.2517 0.2677 0.2834 0.2987 0.3135 0.3276 0.3408 0.3530 0.3641 0.3739 0.3823 0.3891 0.3944 0.3980 0.3999 0.4000 0.3984 0.3951 0.3901 0.3835 0.3753 0.3658 0.3549 0.3428 0.3297 0.3158 0.3011 0.2858 0.2702 0.2543 0.2382 0.2223 0.2064 0.1909 0.1758 0.1612 0.1471 0.1337 0.1210 0.1090 0.0978 0.0873 0.0776 0.0687 0.0606 0.0532 0.0465 0.0404 0.0350 0.0302 0.0259 0.0222 0.0189 0.0160 0.0135 0.0113 0.0095 0.0079 0.0066 0.0054 0.0044 0.0036 0.0030 -Ifit1 0.0063 0.0075 0.0089 0.0105 0.0124 0.0145 0.0169 0.0197 0.0228 0.0264 0.0303 0.0347 0.0397 0.0451 0.0511 0.0577 0.0649 0.0728 0.0812 0.0904 0.1002 0.1106 0.1217 0.1333 0.1456 0.1584 0.1717 0.1854 0.1995 0.2138 0.2284 0.2430 0.2576 0.2720 0.2862 0.3001 0.3134 0.3261 0.3381 0.3492 0.3593 0.3684 0.3763 0.3830 0.3883 0.3922 0.3948 0.3958 0.3954 0.3936 0.3902 0.3855 0.3795 0.3721 0.3635 0.3539 0.3432 0.3316 0.3192 0.3061 0.2925 0.2784 0.2641 0.2495 0.2349 0.2203 0.2059 0.1917 0.1778 0.1643 0.1513 0.1388 0.1268 0.1155 0.1047 0.0947 0.0852 0.0765 0.0683 0.0609 0.0540 0.0477 0.0420 0.0369 0.0322 0.0281 0.0244 0.0211 0.0181 0.0156 0.0133 0.0113 0.0096 0.0081 0.0068 0.0057 0.0048 0.0040 0.0033 0.0027 0.0023 -Oas1g 0.0009 0.0011 0.0014 0.0018 0.0022 0.0028 0.0034 0.0042 0.0052 0.0063 0.0076 0.0092 0.0111 0.0133 0.0158 0.0187 0.0221 0.0260 0.0304 0.0353 0.0409 0.0472 0.0542 0.0619 0.0704 0.0797 0.0899 0.1008 0.1125 0.1251 0.1383 0.1523 0.1670 0.1822 0.1978 0.2138 0.2300 0.2464 0.2626 0.2787 0.2943 0.3094 0.3238 0.3373 0.3497 0.3609 0.3707 0.3791 0.3858 0.3909 0.3942 0.3956 0.3953 0.3931 0.3891 0.3834 0.3761 0.3672 0.3568 0.3451 0.3323 0.3184 0.3038 0.2884 0.2726 0.2565 0.2401 0.2238 0.2077 0.1918 0.1763 0.1613 0.1469 0.1332 0.1202 0.1080 0.0965 0.0859 0.0761 0.0671 0.0589 0.0514 0.0447 0.0387 0.0334 0.0286 0.0244 0.0208 0.0176 0.0148 0.0124 0.0103 0.0086 0.0071 0.0058 0.0048 0.0039 0.0032 0.0025 0.0020 0.0016 -Ifih1 0.0023 0.0028 0.0034 0.0041 0.0050 0.0060 0.0071 0.0085 0.0101 0.0119 0.0140 0.0164 0.0192 0.0223 0.0259 0.0299 0.0343 0.0393 0.0449 0.0510 0.0578 0.0652 0.0733 0.0820 0.0914 0.1015 0.1124 0.1238 0.1359 0.1487 0.1620 0.1758 0.1900 0.2046 0.2195 0.2345 0.2496 0.2647 0.2795 0.2941 0.3082 0.3218 0.3347 0.3467 0.3578 0.3678 0.3766 0.3842 0.3903 0.3951 0.3984 0.4001 0.4003 0.3990 0.3961 0.3917 0.3859 0.3787 0.3702 0.3605 0.3497 0.3379 0.3252 0.3118 0.2978 0.2834 0.2685 0.2535 0.2384 0.2234 0.2084 0.1938 0.1794 0.1655 0.1521 0.1392 0.1269 0.1153 0.1043 0.0940 0.0844 0.0755 0.0672 0.0597 0.0527 0.0464 0.0407 0.0356 0.0310 0.0269 0.0232 0.0200 0.0171 0.0146 0.0124 0.0105 0.0089 0.0075 0.0063 0.0052 0.0043 -Parp9 0.0080 0.0094 0.0111 0.0130 0.0152 0.0177 0.0205 0.0237 0.0272 0.0312 0.0357 0.0406 0.0461 0.0521 0.0587 0.0659 0.0737 0.0821 0.0912 0.1009 0.1112 0.1222 0.1337 0.1458 0.1585 0.1716 0.1851 0.1990 0.2132 0.2276 0.2420 0.2565 0.2709 0.2850 0.2988 0.3121 0.3249 0.3369 0.3482 0.3586 0.3679 0.3761 0.3832 0.3889 0.3934 0.3964 0.3981 0.3983 0.3971 0.3945 0.3905 0.3851 0.3785 0.3706 0.3617 0.3516 0.3406 0.3288 0.3163 0.3031 0.2894 0.2754 0.2611 0.2467 0.2322 0.2178 0.2035 0.1895 0.1759 0.1626 0.1498 0.1375 0.1258 0.1146 0.1041 0.0942 0.0849 0.0763 0.0683 0.0609 0.0541 0.0480 0.0423 0.0372 0.0326 0.0285 0.0247 0.0214 0.0185 0.0159 0.0137 0.0117 0.0099 0.0084 0.0071 0.0060 0.0050 0.0042 0.0035 0.0029 0.0024 -Oas1a 0.0034 0.0042 0.0051 0.0061 0.0073 0.0087 0.0104 0.0124 0.0146 0.0172 0.0201 0.0235 0.0273 0.0316 0.0364 0.0417 0.0477 0.0543 0.0616 0.0695 0.0782 0.0876 0.0977 0.1085 0.1201 0.1323 0.1452 0.1586 0.1727 0.1871 0.2020 0.2172 0.2325 0.2479 0.2633 0.2785 0.2933 0.3077 0.3214 0.3344 0.3465 0.3576 0.3675 0.3761 0.3834 0.3892 0.3935 0.3963 0.3974 0.3969 0.3947 0.3910 0.3857 0.3790 0.3708 0.3613 0.3507 0.3389 0.3263 0.3128 0.2986 0.2839 0.2689 0.2536 0.2382 0.2228 0.2075 0.1925 0.1779 0.1637 0.1500 0.1369 0.1245 0.1127 0.1016 0.0912 0.0816 0.0726 0.0644 0.0569 0.0501 0.0439 0.0383 0.0332 0.0288 0.0248 0.0213 0.0182 0.0155 0.0131 0.0111 0.0093 0.0078 0.0065 0.0054 0.0045 0.0037 0.0030 0.0025 0.0020 0.0016 -Irf7 0.0002 0.0003 0.0004 0.0005 0.0006 0.0008 0.0010 0.0013 0.0016 0.0021 0.0026 0.0033 0.0040 0.0050 0.0061 0.0075 0.0091 0.0111 0.0133 0.0160 0.0191 0.0226 0.0267 0.0314 0.0367 0.0428 0.0495 0.0570 0.0654 0.0746 0.0846 0.0956 0.1074 0.1201 0.1336 0.1478 0.1628 0.1784 0.1946 0.2111 0.2279 0.2448 0.2617 0.2783 0.2946 0.3102 0.3250 0.3388 0.3514 0.3627 0.3725 0.3806 0.3870 0.3916 0.3942 0.3948 0.3935 0.3903 0.3851 0.3781 0.3694 0.3591 0.3473 0.3343 0.3201 0.3050 0.2892 0.2728 0.2561 0.2392 0.2223 0.2056 0.1891 0.1732 0.1577 0.1430 0.1290 0.1157 0.1033 0.0918 0.0812 0.0714 0.0625 0.0544 0.0472 0.0407 0.0349 0.0298 0.0253 0.0214 0.0180 0.0151 0.0125 0.0104 0.0086 0.0070 0.0057 0.0047 0.0038 0.0030 0.0024 -Mx1 0.0028 0.0035 0.0043 0.0053 0.0066 0.0081 0.0098 0.0119 0.0144 0.0173 0.0207 0.0246 0.0291 0.0342 0.0400 0.0465 0.0539 0.0621 0.0711 0.0811 0.0919 0.1037 0.1164 0.1300 0.1444 0.1595 0.1754 0.1918 0.2086 0.2258 0.2431 0.2604 0.2775 0.2941 0.3102 0.3254 0.3396 0.3526 0.3641 0.3742 0.3824 0.3889 0.3934 0.3959 0.3964 0.3948 0.3911 0.3855 0.3780 0.3688 0.3579 0.3455 0.3318 0.3170 0.3013 0.2849 0.2680 0.2508 0.2335 0.2162 0.1992 0.1826 0.1665 0.1510 0.1363 0.1223 0.1092 0.0970 0.0858 0.0754 0.0660 0.0574 0.0497 0.0428 0.0367 0.0312 0.0265 0.0223 0.0187 0.0156 0.0130 0.0107 0.0088 0.0072 0.0059 0.0047 0.0038 0.0031 0.0024 0.0019 0.0015 0.0012 0.0009 0.0007 0.0006 0.0004 0.0003 0.0002 0.0002 0.0001 0.0001 -Trim25 0.0009 0.0012 0.0014 0.0018 0.0022 0.0026 0.0032 0.0039 0.0047 0.0056 0.0068 0.0081 0.0096 0.0113 0.0133 0.0156 0.0183 0.0213 0.0247 0.0286 0.0329 0.0377 0.0431 0.0490 0.0556 0.0628 0.0706 0.0791 0.0883 0.0982 0.1087 0.1200 0.1319 0.1444 0.1575 0.1711 0.1851 0.1996 0.2144 0.2293 0.2444 0.2594 0.2743 0.2889 0.3031 0.3168 0.3299 0.3422 0.3535 0.3638 0.3730 0.3809 0.3875 0.3927 0.3964 0.3987 0.3993 0.3985 0.3961 0.3922 0.3868 0.3801 0.3720 0.3627 0.3522 0.3408 0.3284 0.3153 0.3015 0.2872 0.2725 0.2576 0.2426 0.2275 0.2126 0.1979 0.1835 0.1695 0.1559 0.1429 0.1304 0.1186 0.1075 0.0970 0.0872 0.0781 0.0696 0.0619 0.0548 0.0483 0.0424 0.0371 0.0323 0.0281 0.0243 0.0209 0.0180 0.0153 0.0131 0.0111 0.0094 -Oas3 0.0017 0.0021 0.0026 0.0032 0.0039 0.0048 0.0059 0.0072 0.0087 0.0104 0.0125 0.0149 0.0177 0.0209 0.0246 0.0289 0.0337 0.0391 0.0452 0.0520 0.0595 0.0679 0.0771 0.0871 0.0980 0.1098 0.1224 0.1358 0.1501 0.1651 0.1808 0.1971 0.2139 0.2311 0.2486 0.2662 0.2837 0.3011 0.3181 0.3345 0.3502 0.3650 0.3787 0.3911 0.4021 0.4116 0.4195 0.4255 0.4297 0.4320 0.4324 0.4308 0.4273 0.4220 0.4148 0.4059 0.3954 0.3835 0.3702 0.3558 0.3405 0.3243 0.3075 0.2903 0.2728 0.2552 0.2377 0.2204 0.2034 0.1869 0.1709 0.1557 0.1411 0.1273 0.1144 0.1023 0.0911 0.0807 0.0712 0.0626 0.0547 0.0476 0.0413 0.0356 0.0306 0.0262 0.0223 0.0189 0.0159 0.0134 0.0112 0.0093 0.0077 0.0064 0.0052 0.0043 0.0035 0.0028 0.0023 0.0018 0.0015 -Pglyrp3 0.0011 0.0014 0.0017 0.0021 0.0026 0.0032 0.0039 0.0047 0.0057 0.0069 0.0083 0.0100 0.0119 0.0141 0.0166 0.0196 0.0229 0.0267 0.0310 0.0359 0.0413 0.0474 0.0541 0.0614 0.0695 0.0783 0.0878 0.0981 0.1091 0.1208 0.1332 0.1462 0.1598 0.1739 0.1885 0.2034 0.2185 0.2337 0.2490 0.2640 0.2788 0.2931 0.3069 0.3199 0.3320 0.3431 0.3530 0.3617 0.3690 0.3748 0.3790 0.3817 0.3827 0.3821 0.3798 0.3759 0.3705 0.3635 0.3552 0.3455 0.3347 0.3228 0.3100 0.2964 0.2822 0.2675 0.2525 0.2373 0.2220 0.2069 0.1919 0.1773 0.1631 0.1493 0.1362 0.1236 0.1118 0.1006 0.0902 0.0804 0.0715 0.0632 0.0557 0.0489 0.0427 0.0371 0.0321 0.0277 0.0238 0.0203 0.0173 0.0147 0.0124 0.0104 0.0087 0.0072 0.0060 0.0050 0.0041 0.0033 0.0027 -Pml 0.0001 0.0001 0.0002 0.0002 0.0003 0.0004 0.0005 0.0006 0.0008 0.0010 0.0013 0.0016 0.0020 0.0026 0.0032 0.0040 0.0049 0.0060 0.0073 0.0089 0.0107 0.0129 0.0154 0.0184 0.0218 0.0257 0.0302 0.0353 0.0411 0.0476 0.0548 0.0628 0.0716 0.0813 0.0918 0.1032 0.1155 0.1285 0.1424 0.1570 0.1722 0.1880 0.2043 0.2209 0.2377 0.2546 0.2713 0.2877 0.3036 0.3188 0.3332 0.3466 0.3587 0.3695 0.3787 0.3863 0.3922 0.3962 0.3983 0.3985 0.3967 0.3930 0.3875 0.3802 0.3713 0.3608 0.3489 0.3357 0.3215 0.3064 0.2906 0.2743 0.2576 0.2408 0.2240 0.2073 0.1910 0.1751 0.1597 0.1450 0.1310 0.1178 0.1054 0.0938 0.0831 0.0733 0.0643 0.0562 0.0488 0.0422 0.0363 0.0311 0.0265 0.0225 0.0190 0.0159 0.0133 0.0111 0.0092 0.0076 0.0062 diff --git a/sourcecodes/data/example_chr2_spleen/cuLthr.txt b/sourcecodes/data/example_chr2_spleen/cuLthr.txt deleted file mode 100644 index b63ba696..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLthr.txt +++ /dev/null @@ -1 +0,0 @@ -0.9 diff --git a/sourcecodes/data/example_chr2_spleen/cuLtier.txt b/sourcecodes/data/example_chr2_spleen/cuLtier.txt deleted file mode 100644 index e71cfdda..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLtier.txt +++ /dev/null @@ -1 +0,0 @@ -3,Tier1,1,rs3664317,Tier2,1,Ifih1,Tier3,12,Oas1a,Parp9,Dhx58,Cd1d1,Irf7,Oas3,Pml,Mx1,Ifit1,Trim25,Oas1g,Pglyrp3, \ No newline at end of file diff --git a/sourcecodes/data/example_chr2_spleen/cuLtype.txt b/sourcecodes/data/example_chr2_spleen/cuLtype.txt deleted file mode 100644 index 1b707710..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLtype.txt +++ /dev/null @@ -1,2 +0,0 @@ -rs3664317 Oas1a Parp9 Dhx58 Cd1d1 Irf7 Oas3 Pml Mx1 Ifit1 Trim25 Oas1g Pglyrp3 Ifih1 -2 1 1 1 1 1 1 1 1 1 1 1 1 1 diff --git a/sourcecodes/data/example_chr2_spleen/cuLwhite.txt b/sourcecodes/data/example_chr2_spleen/cuLwhite.txt deleted file mode 100644 index 83e81b8b..00000000 --- a/sourcecodes/data/example_chr2_spleen/cuLwhite.txt +++ /dev/null @@ -1 +0,0 @@ -From To diff --git a/sourcecodes/data/example_chr2_spleen/old/cuLrun_evidencemodified.sh b/sourcecodes/data/example_chr2_spleen/old/cuLrun_evidencemodified.sh deleted file mode 100644 index 5a228612..00000000 --- a/sourcecodes/data/example_chr2_spleen/old/cuLrun_evidencemodified.sh +++ /dev/null @@ -1,38 +0,0 @@ -#!/bin/sh -# script for execution of deployed applications -# -# Sets up the MCR environment for the current $ARCH and executes -# the specified command. -# -exe_name=$0 -exe_dir=`dirname "$0"` -echo "------------------------------------------" -if [ "x$1" = "x" ]; then - echo Usage: - echo $0 \<deployedMCRroot\> args -else - echo Setting up environment variables - MCRROOT="$1" - echo --- - LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; - MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; - XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; - export LD_LIBRARY_PATH; - export XAPPLRESDIR; - echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; - shift 1 - args= - while [ $# -gt 0 ]; do - token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank - args="${args} ${token}" - shift - done - "${exe_dir}"/evidencemodified cuL -fi -exit diff --git a/sourcecodes/data/example_chr2_spleen/old/cuLrun_initialstructure.sh b/sourcecodes/data/example_chr2_spleen/old/cuLrun_initialstructure.sh deleted file mode 100644 index 1d0835a4..00000000 --- a/sourcecodes/data/example_chr2_spleen/old/cuLrun_initialstructure.sh +++ /dev/null @@ -1,38 +0,0 @@ -#!/bin/sh -# script for execution of deployed applications -# -# Sets up the MCR environment for the current $ARCH and executes -# the specified command. -# -exe_name=$0 -exe_dir=`dirname "$0"` -echo "------------------------------------------" -if [ "x$1" = "x" ]; then - echo Usage: - echo $0 \<deployedMCRroot\> args -else - echo Setting up environment variables - MCRROOT="$1" - echo --- - LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; - MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; - XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; - export LD_LIBRARY_PATH; - export XAPPLRESDIR; - echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; - shift 1 - args= - while [ $# -gt 0 ]; do - token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank - args="${args} ${token}" - shift - done - "${exe_dir}"/initialstructure cuL -fi -exit diff --git a/sourcecodes/data/example_sample/sample_input.txt~ b/sourcecodes/data/example_sample/sample_input.txt~ deleted file mode 100644 index 62705bb9..00000000 --- a/sourcecodes/data/example_sample/sample_input.txt~ +++ /dev/null @@ -1,42 +0,0 @@ -Ctrq3 MAS Neutrophil Load Weight -2 0.969230769 3 3.252367514 1 -2 0.925170068 1.6 2.46322088 1.033472803 -1 0.427272727 33.8 4.206610024 0.831372549 -2 0.877835951 8.3 3.764250875 0.967153285 -2 0.914862915 4.4 3.691700208 1.046025105 -2 0.560334528 4.9 2.604550033 0.98046875 -1 0.383073497 13.1 4.273556814 0.812316716 -1 0.101010101 18.6 5.089640217 0.771929825 -1 0.106719368 18.9 4.915125346 0.80994152 -2 0.894736842 2.5 2.691700208 0.995515695 -1 0.067226891 19.8 4.878194228 0.846153846 -2 0.921022067 2.9 4.127428778 1.03875969 -2 0.938701923 0.7 4.366310867 0.984732824 -1 0.658008658 15.7 4.531121115 0.884210526 -2 0.9 4.8 2.604550033 0.913194444 -2 0.790923825 10.4 2.390670213 0.892857143 -1 0.295539033 8.6 4.24137213 0.85840708 -2 0.317757009 12.2 4.449648073 0.889830508 -1 0.032418953 20.2 5.053428044 0.811320755 -1 0.603960396 23.4 4.283775979 0.805460751 -2 0.939351199 3.6 2.349277527 0.952380952 -1 0.978448276 0.4 3.495405563 0.8875 -1 0.1 23.2 4.675613388 0.766101695 -1 0.036363636 32.6 4.938109253 0.828125 -1 0.660247593 9.2 3.826398782 0.921052632 -1 0.078651685 35.8 4.513630383 0.852112676 -1 0.186915888 20.7 5.048247532 0.779761905 -1 0.071578947 35.6 4.574586809 0.797356828 -1 0.239520958 15.4 4.331548761 0.941176471 -1 0.205741627 24.5 5.058547488 0.774193548 -1 0.062300319 13.4 4.594790195 0.832236842 -2 0.599675851 5 4.18178644 0.969348659 -1 0.324246772 13.5 4.252367514 0.858585859 -1 0.87628866 14.2 2.929061124 0.869863014 -1 0.146103896 15.6 4.579726449 0.9 -1 0.257383966 22.5 5.210214148 0.75 -1 0.033333333 31.1 4.632578756 0.718644068 -1 0.29739777 36.1 3.880756445 0.798353909 -2 0.872979215 4.2 4.097465554 0.856756757 -2 0.909221902 4.3 3.650307523 0.976 -1 0.10041841 28.3 4.46322088 0.757462687 diff --git a/sourcecodes/data/example_sci/LluOyOgrviz_name_file.txt b/sourcecodes/data/example_sci/LluOyOgrviz_name_file.txt deleted file mode 100644 index b31e4c3c..00000000 --- a/sourcecodes/data/example_sci/LluOyOgrviz_name_file.txt +++ /dev/null @@ -1,6 +0,0 @@ -Genotype -Gene3 -Gene2 -Phenotype -Gene1 - diff --git a/sourcecodes/data/example_sci/Lluban.txt b/sourcecodes/data/example_sci/Lluban.txt deleted file mode 100644 index 38108f00..00000000 --- a/sourcecodes/data/example_sci/Lluban.txt +++ /dev/null @@ -1,15 +0,0 @@ -From To -Gene1 Genotype -Gene2 Genotype -Gene3 Genotype -Phenotype Genotype -Gene1 Genotype -Gene2 Genotype -Gene3 Genotype -Phenotype Gene1 -Phenotype Gene2 -Phenotype Gene3 -Phenotype Genotype -Phenotype Gene1 -Phenotype Gene2 -Phenotype Gene3 diff --git a/sourcecodes/data/example_sci/Llucontinuous_input.txt b/sourcecodes/data/example_sci/Llucontinuous_input.txt deleted file mode 100644 index 79295d7e..00000000 --- a/sourcecodes/data/example_sci/Llucontinuous_input.txt +++ /dev/null @@ -1,503 +0,0 @@ -Genotype Gene3 Gene2 Phenotype Gene1 -2 1 1 1 1 -2 -1.0008 -0.44837 0.21808 -1.196 -1 -0.29368 -0.53043 -1.0893 -0.10136 -2 0.70835 0.72886 -0.18098 -0.42907 -1 0.63703 0.86428 1.7013 0.1425 -1 -1.2402 -0.69712 -1.7002 -0.71634 -1 -1.1952 0.27155 -0.79413 -1.0965 -2 0.62914 0.94265 1.8385 0.6135 -1 -1.91 -2.379 -3.1094 -1.0924 -2 -0.83436 -0.90968 -1.3598 1.335 -1 0.15685 0.4766 1.2891 -1.3309 -2 0.7047 1.0623 1.9811 1.2821 -1 0.59747 -0.023123 0.88555 -0.8844 -1 -1.0557 -1.5548 -1.3016 -0.77687 -2 1.5206 2.0289 0.90366 1.8089 -1 0.65525 -0.47226 -1.1824 0.41863 -2 -0.39262 0.382 -0.64829 0.40947 -2 0.14966 0.22972 0.33797 0.69647 -1 -1.8836 -0.68534 -0.99941 -0.78961 -1 0.48181 0.01241 1.2145 0.16835 -2 1.4673 2.0438 2.4674 2.5234 -1 -1.3242 -0.80218 -1.6446 -0.31044 -1 -1.2471 -2.0351 -1.0296 -1.937 -1 0.23695 -0.01724 -0.32851 -0.16484 -1 -0.13986 -0.6065 -0.8491 -0.95538 -2 0.90888 1.0365 2.7222 1.3507 -1 -0.30556 -1.1546 -0.86033 -2.2006 -2 0.5391 0.99532 0.96947 1.1575 -2 1.1235 0.37982 0.64439 0.94362 -2 1.7073 1.9303 2.8018 1.9158 -1 -0.20553 -0.074104 -0.50073 -1.0697 -1 -0.27415 0.23076 -0.27564 -0.11286 -1 -1.304 -1.1213 -0.71793 -1.3462 -2 0.54315 0.55846 0.87411 1.2432 -1 -1.0659 -0.38067 -1.4372 -2.0927 -1 0.21278 -1.0115 -1.0984 -0.72751 -1 -2.9061 -1.3118 -3.8372 -2.0448 -2 -0.69608 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-1.9011 -1 0.47029 -0.06201 -0.34515 -0.57857 -1 -2.6597 -1.5144 -3.0038 -1.949 -2 -0.064474 -0.25394 -0.34794 0.76334 -2 0.52259 0.76325 0.93484 0.060827 -1 0.89037 0.68007 0.50459 -0.88464 -2 1.0031 1.3853 1.7313 0.75303 -2 0.6954 1.3692 0.19298 1.6174 -2 -0.14026 1.1774 0.39386 -0.25913 -2 -1.7796 -1.2709 -2.5775 -0.36996 -2 0.41557 1.9905 1.839 1.1327 -1 0.53878 -0.71974 -0.65395 -0.62597 -2 0.22326 1.3888 0.17221 1.2265 -1 -0.12667 -1.1336 -0.67 -3.6161 -2 1.0183 1.5883 2.2784 1.7509 -1 -2.0415 -2.2483 -2.8307 -3.1148 -2 -1.1513 -0.08575 -0.62876 2.164 -1 0.1961 0.075096 1.9551 0.039445 -2 -0.96925 0.12921 -1.2741 1.8371 -1 0.34137 0.086468 1.4716 0.55236 -1 -0.20756 -0.74846 0.65256 -0.7032 -2 1.1736 1.0214 1.258 1.0002 -2 0.48081 1.3275 0.54443 1.2194 -2 -0.45146 0.38298 0.64902 0.90395 -1 0.75519 -1.0627 -0.35778 -1.7689 -1 -1.4308 -1.0998 -1.0094 -0.66361 -1 -0.097019 0.18029 -9.0423e-07 0.59444 -2 1.3769 2.4872 3.2855 0.98727 -2 0.79201 0.76361 0.88459 3.119 -2 2.5125 2.4776 4.6119 3.966 -1 0.57129 -0.93689 -0.20516 -0.42323 -1 -0.91517 -0.25445 -1.3515 -0.99354 -1 0.17456 -0.98904 -0.49643 -0.8997 -1 -2.2724 -1.6869 -3.8034 -2.0882 -2 -1.8188 -0.57721 -2.4386 0.058963 -2 -0.19227 0.038901 -0.85065 0.6644 -1 -1.5517 -0.57182 -0.9874 -1.4081 -2 -0.47999 0.49667 0.27351 0.6261 -2 0.45041 0.48469 0.55808 2.0659 -1 -1.1302 -1.255 -2.7206 -1.2712 -1 -0.60672 -1.1008 -2.6889 -1.0078 -1 -1.0508 -0.99612 -1.555 -1.0463 -2 0.14434 0.97791 1.2498 1.7391 -2 0.21333 1.6686 1.219 1.8919 -2 -0.35461 -0.64694 -1.3312 -0.10481 -1 -2.0611 -2.1245 -3.6067 -1.6584 -2 -0.3534 0.45962 -0.39991 0.45667 -1 -0.37564 -0.63085 -1.2641 -1.3292 -1 0.30023 -0.20283 0.041852 -0.17139 -2 0.25089 1.0204 1.8084 1.0493 -1 -0.44041 -1.1143 -0.59224 -0.84288 -2 -0.11392 0.5681 -0.054604 0.88897 -1 0.41829 -1.042 -0.0042274 -1.9512 -2 1.4863 2.9227 3.0012 3.1253 -1 -0.60588 -1.1196 -1.4647 -0.92268 -1 -0.10497 -0.74629 -1.8353 -0.35425 -1 -1.2499 -0.83335 -2.4047 -1.4657 -1 -0.51414 -1.4602 -0.54649 -1.0475 -1 0.56956 0.79545 0.86494 -0.59471 -1 -0.64964 -0.78543 -1.9412 -2.2114 -2 1.0044 0.56431 1.2968 1.3807 -1 -1.1924 -0.69401 -0.72828 -1.7252 -2 0.15739 1.0449 0.3742 1.4303 -2 0.49582 1.4353 1.1652 1.5814 - diff --git a/sourcecodes/data/example_sci/Llugraphviz.txt b/sourcecodes/data/example_sci/Llugraphviz.txt deleted file mode 100644 index 88bbd3ba..00000000 --- a/sourcecodes/data/example_sci/Llugraphviz.txt +++ /dev/null @@ -1,10 +0,0 @@ -digraph G { -size="10,10"; ratio = fill; -node [shape=square,width=1.5]; -Genotype -> Gene3; -Genotype -> Gene1; -Gene3 -> Phenotype; -Gene2 -> Gene3; -Gene2 -> Phenotype; -Gene1 -> Gene2; -} \ No newline at end of file diff --git a/sourcecodes/data/example_sci/Lluk.txt b/sourcecodes/data/example_sci/Lluk.txt deleted file mode 100644 index 83b33d23..00000000 --- a/sourcecodes/data/example_sci/Lluk.txt +++ /dev/null @@ -1 +0,0 @@ -1000 diff --git a/sourcecodes/data/example_sci/Llumap.txt b/sourcecodes/data/example_sci/Llumap.txt deleted file mode 100644 index dfe8ca75..00000000 --- a/sourcecodes/data/example_sci/Llumap.txt +++ /dev/null @@ -1,5 +0,0 @@ -Genotype 0.500305 1.514000 -Gene3 1.027261 -0.015284 -Gene2 1.160583 0.138097 -Phenotype 1.554104 0.069005 -Gene1 1.515414 0.174451 diff --git a/sourcecodes/data/example_sci/Llumapdata.txt b/sourcecodes/data/example_sci/Llumapdata.txt deleted file mode 100644 index d684ea06..00000000 --- a/sourcecodes/data/example_sci/Llumapdata.txt +++ /dev/null @@ -1 +0,0 @@ -Genotype Gene1 Gene2 Gene3 Phenotype diff --git a/sourcecodes/data/example_sci/Lluname.txt b/sourcecodes/data/example_sci/Lluname.txt deleted file mode 100644 index f3a1f5bf..00000000 --- a/sourcecodes/data/example_sci/Lluname.txt +++ /dev/null @@ -1 +0,0 @@ -Genotype Gene3 Gene2 Phenotype Gene1 diff --git a/sourcecodes/data/example_sci/Llunet_figure.txt b/sourcecodes/data/example_sci/Llunet_figure.txt deleted file mode 100644 index 2f383b1a..00000000 --- a/sourcecodes/data/example_sci/Llunet_figure.txt +++ /dev/null @@ -1,433 +0,0 @@ -5 -1200 1200 -Genotype 0 0 -Gene1 120 200 -Gene2 0 400 -Gene3 120 600 -Phenotype 0 800 -Genotype 2 -250 150 -0 -2 2 4 -1 0.4860 -2 0.5140 -Gene1 1 -250 150 -1 1 -1 3 --5.1315 0.0009 --5.0254 0.0012 --4.9193 0.0015 --4.8131 0.0019 --4.7070 0.0024 --4.6009 0.0030 --4.4947 0.0037 --4.3886 0.0046 --4.2825 0.0056 --4.1764 0.0069 --4.0702 0.0083 --3.9641 0.0101 --3.8580 0.0121 --3.7518 0.0145 --3.6457 0.0174 --3.5396 0.0206 --3.4334 0.0243 --3.3273 0.0286 --3.2212 0.0335 --3.1151 0.0389 --3.0089 0.0451 --2.9028 0.0520 --2.7967 0.0597 --2.6905 0.0682 --2.5844 0.0775 --2.4783 0.0876 --2.3722 0.0986 --2.2660 0.1105 --2.1599 0.1231 --2.0538 0.1366 --1.9476 0.1508 --1.8415 0.1657 --1.7354 0.1811 --1.6292 0.1971 --1.5231 0.2134 --1.4170 0.2300 --1.3109 0.2467 --1.2047 0.2633 --1.0986 0.2797 --0.9925 0.2956 --0.8863 0.3110 --0.7802 0.3256 --0.6741 0.3392 --0.5680 0.3517 --0.4618 0.3629 --0.3557 0.3726 --0.2496 0.3808 --0.1434 0.3873 --0.0373 0.3920 -0.0688 0.3948 -0.1749 0.3958 -0.2811 0.3948 -0.3872 0.3920 -0.4933 0.3872 -0.5995 0.3807 -0.7056 0.3726 -0.8117 0.3628 -0.9179 0.3516 -1.0240 0.3391 -1.1301 0.3254 -1.2362 0.3108 -1.3424 0.2955 -1.4485 0.2795 -1.5546 0.2631 -1.6608 0.2465 -1.7669 0.2299 -1.8730 0.2133 -1.9791 0.1969 -2.0853 0.1810 -2.1914 0.1655 -2.2975 0.1507 -2.4037 0.1365 -2.5098 0.1230 -2.6159 0.1103 -2.7221 0.0985 -2.8282 0.0875 -2.9343 0.0774 -3.0404 0.0681 -3.1466 0.0596 -3.2527 0.0520 -3.3588 0.0451 -3.4650 0.0389 -3.5711 0.0334 -3.6772 0.0286 -3.7833 0.0243 -3.8895 0.0206 -3.9956 0.0173 -4.1017 0.0145 -4.2079 0.0121 -4.3140 0.0101 -4.4201 0.0083 -4.5263 0.0068 -4.6324 0.0056 -4.7385 0.0046 -4.8446 0.0037 -4.9508 0.0030 -5.0569 0.0024 -5.1630 0.0019 -5.2692 0.0015 -5.3753 0.0012 -5.4814 0.0009 -Gene2 1 -250 150 -1 2 -2 4 5 --4.0240 0.0008 --3.9383 0.0010 --3.8526 0.0013 --3.7669 0.0016 --3.6813 0.0020 --3.5956 0.0026 --3.5099 0.0032 --3.4242 0.0041 --3.3385 0.0050 --3.2528 0.0062 --3.1672 0.0077 --3.0815 0.0094 --2.9958 0.0114 --2.9101 0.0138 --2.8244 0.0166 --2.7387 0.0199 --2.6531 0.0237 --2.5674 0.0281 --2.4817 0.0331 --2.3960 0.0388 --2.3103 0.0453 --2.2246 0.0526 --2.1390 0.0607 --2.0533 0.0696 --1.9676 0.0795 --1.8819 0.0903 --1.7962 0.1021 --1.7106 0.1147 --1.6249 0.1282 --1.5392 0.1426 --1.4535 0.1578 --1.3678 0.1736 --1.2821 0.1900 --1.1965 0.2069 --1.1108 0.2241 --1.0251 0.2414 --0.9394 0.2587 --0.8537 0.2758 --0.7680 0.2924 --0.6824 0.3084 --0.5967 0.3236 --0.5110 0.3377 --0.4253 0.3506 --0.3396 0.3621 --0.2539 0.3719 --0.1683 0.3800 --0.0826 0.3863 -0.0031 0.3905 -0.0888 0.3927 -0.1745 0.3929 -0.2601 0.3910 -0.3458 0.3870 -0.4315 0.3811 -0.5172 0.3732 -0.6029 0.3636 -0.6886 0.3524 -0.7742 0.3397 -0.8599 0.3258 -0.9456 0.3108 -1.0313 0.2949 -1.1170 0.2783 -1.2027 0.2613 -1.2883 0.2440 -1.3740 0.2267 -1.4597 0.2095 -1.5454 0.1925 -1.6311 0.1760 -1.7168 0.1601 -1.8024 0.1449 -1.8881 0.1304 -1.9738 0.1167 -2.0595 0.1039 -2.1452 0.0920 -2.2309 0.0811 -2.3165 0.0711 -2.4022 0.0620 -2.4879 0.0537 -2.5736 0.0464 -2.6593 0.0398 -2.7449 0.0340 -2.8306 0.0288 -2.9163 0.0243 -3.0020 0.0205 -3.0877 0.0171 -3.1734 0.0142 -3.2590 0.0117 -3.3447 0.0097 -3.4304 0.0079 -3.5161 0.0064 -3.6018 0.0052 -3.6875 0.0042 -3.7731 0.0034 -3.8588 0.0027 -3.9445 0.0021 -4.0302 0.0017 -4.1159 0.0013 -4.2016 0.0010 -4.2872 0.0008 -4.3729 0.0006 -4.4586 0.0005 -4.5443 0.0004 -Gene3 1 -250 150 -2 1 3 -1 5 --4.4912 0.0001 --4.4081 0.0001 --4.3250 0.0001 --4.2419 0.0001 --4.1589 0.0002 --4.0758 0.0002 --3.9927 0.0003 --3.9096 0.0004 --3.8266 0.0006 --3.7435 0.0008 --3.6604 0.0010 --3.5773 0.0013 --3.4942 0.0018 --3.4112 0.0023 --3.3281 0.0029 --3.2450 0.0037 --3.1619 0.0047 --3.0789 0.0059 --2.9958 0.0074 --2.9127 0.0092 --2.8296 0.0113 --2.7466 0.0139 --2.6635 0.0170 --2.5804 0.0206 --2.4973 0.0248 --2.4143 0.0297 --2.3312 0.0354 --2.2481 0.0419 --2.1650 0.0493 --2.0820 0.0576 --1.9989 0.0669 --1.9158 0.0773 --1.8327 0.0887 --1.7496 0.1012 --1.6666 0.1147 --1.5835 0.1292 --1.5004 0.1447 --1.4173 0.1610 --1.3343 0.1781 --1.2512 0.1958 --1.1681 0.2139 --1.0850 0.2323 --1.0020 0.2507 --0.9189 0.2688 --0.8358 0.2866 --0.7527 0.3036 --0.6697 0.3197 --0.5866 0.3345 --0.5035 0.3479 --0.4204 0.3597 --0.3373 0.3695 --0.2543 0.3773 --0.1712 0.3828 --0.0881 0.3861 --0.0050 0.3870 -0.0780 0.3855 -0.1611 0.3817 -0.2442 0.3756 -0.3273 0.3673 -0.4103 0.3570 -0.4934 0.3449 -0.5765 0.3311 -0.6596 0.3160 -0.7426 0.2996 -0.8257 0.2824 -0.9088 0.2645 -0.9919 0.2463 -1.0749 0.2279 -1.1580 0.2095 -1.2411 0.1915 -1.3242 0.1740 -1.4073 0.1570 -1.4903 0.1409 -1.5734 0.1256 -1.6565 0.1114 -1.7396 0.0981 -1.8226 0.0859 -1.9057 0.0747 -1.9888 0.0646 -2.0719 0.0555 -2.1549 0.0474 -2.2380 0.0402 -2.3211 0.0340 -2.4042 0.0285 -2.4872 0.0237 -2.5703 0.0197 -2.6534 0.0162 -2.7365 0.0132 -2.8195 0.0108 -2.9026 0.0087 -2.9857 0.0070 -3.0688 0.0056 -3.1519 0.0044 -3.2349 0.0035 -3.3180 0.0027 -3.4011 0.0021 -3.4842 0.0016 -3.5672 0.0013 -3.6503 0.0010 -3.7334 0.0007 -3.8165 0.0006 -Phenotype 1 -250 150 -2 3 4 -0 --5.4596 0.0010 --5.3401 0.0013 --5.2207 0.0016 --5.1012 0.0021 --4.9817 0.0026 --4.8623 0.0033 --4.7428 0.0042 --4.6233 0.0052 --4.5039 0.0065 --4.3844 0.0080 --4.2649 0.0098 --4.1455 0.0120 --4.0260 0.0146 --3.9065 0.0176 --3.7871 0.0212 --3.6676 0.0253 --3.5481 0.0300 --3.4287 0.0354 --3.3092 0.0416 --3.1897 0.0486 --3.0703 0.0564 --2.9508 0.0651 --2.8314 0.0748 --2.7119 0.0854 --2.5924 0.0970 --2.4730 0.1096 --2.3535 0.1230 --2.2340 0.1374 --2.1146 0.1526 --1.9951 0.1685 --1.8756 0.1850 --1.7562 0.2021 --1.6367 0.2195 --1.5172 0.2370 --1.3978 0.2545 --1.2783 0.2718 --1.1588 0.2887 --1.0394 0.3049 --0.9199 0.3202 --0.8004 0.3344 --0.6810 0.3473 --0.5615 0.3587 --0.4420 0.3684 --0.3226 0.3763 --0.2031 0.3822 --0.0836 0.3860 -0.0358 0.3877 -0.1553 0.3872 -0.2748 0.3846 -0.3942 0.3798 -0.5137 0.3731 -0.6332 0.3644 -0.7526 0.3539 -0.8721 0.3418 -0.9916 0.3283 -1.1110 0.3136 -1.2305 0.2979 -1.3500 0.2813 -1.4694 0.2643 -1.5889 0.2468 -1.7084 0.2293 -1.8278 0.2118 -1.9473 0.1945 -2.0668 0.1777 -2.1862 0.1614 -2.3057 0.1458 -2.4252 0.1310 -2.5446 0.1170 -2.6641 0.1039 -2.7836 0.0918 -2.9030 0.0806 -3.0225 0.0704 -3.1420 0.0612 -3.2614 0.0529 -3.3809 0.0454 -3.5004 0.0388 -3.6198 0.0329 -3.7393 0.0278 -3.8588 0.0234 -3.9782 0.0195 -4.0977 0.0162 -4.2171 0.0134 -4.3366 0.0110 -4.4561 0.0090 -4.5755 0.0073 -4.6950 0.0059 -4.8145 0.0047 -4.9339 0.0038 -5.0534 0.0030 -5.1729 0.0024 -5.2923 0.0019 -5.4118 0.0015 -5.5313 0.0011 -5.6507 0.0009 -5.7702 0.0007 -5.8897 0.0005 -6.0091 0.0004 -6.1286 0.0003 -6.2481 0.0002 -6.3675 0.0002 -6.4870 0.0001 diff --git a/sourcecodes/data/example_sci/Llunet_figure_new.txt b/sourcecodes/data/example_sci/Llunet_figure_new.txt deleted file mode 100644 index 7e6f0d97..00000000 --- a/sourcecodes/data/example_sci/Llunet_figure_new.txt +++ /dev/null @@ -1,433 +0,0 @@ -1 -5 -1200 1200 -Genotype 0 0 -Gene1 120 200 -Gene2 0 400 -Gene3 120 600 -Phenotype 0 800 -Genotype 2 -250 150 -0 -2 2 4 -1.0000 1.0000 -Gene1 1 -250 150 -1 1 -1 3 --3.5013 0.0000 --3.4313 0.0000 --3.3613 0.0000 --3.2912 0.0000 --3.2212 0.0000 --3.1512 0.0000 --3.0811 0.0000 --3.0111 0.0000 --2.9411 0.0000 --2.8710 0.0000 --2.8010 0.0000 --2.7310 0.0000 --2.6609 0.0000 --2.5909 0.0000 --2.5209 0.0001 --2.4508 0.0002 --2.3808 0.0004 --2.3108 0.0007 --2.2407 0.0014 --2.1707 0.0026 --2.1007 0.0046 --2.0306 0.0079 --1.9606 0.0133 --1.8906 0.0217 --1.8205 0.0344 --1.7505 0.0529 --1.6805 0.0791 --1.6104 0.1147 --1.5404 0.1615 --1.4704 0.2207 --1.4003 0.2928 --1.3303 0.3771 --1.2603 0.4715 --1.1902 0.5723 --1.1202 0.6743 --1.0502 0.7713 --0.9801 0.8564 --0.9101 0.9232 --0.8401 0.9660 --0.7700 0.9813 --0.7000 0.9676 --0.6300 0.9263 --0.5599 0.8608 --0.4899 0.7765 --0.4199 0.6800 --0.3498 0.5781 --0.2798 0.4771 --0.2098 0.3822 --0.1397 0.2973 --0.0697 0.2244 -0.0003 0.1645 -0.0704 0.1170 -0.1404 0.0808 -0.2104 0.0542 -0.2805 0.0353 -0.3505 0.0223 -0.4205 0.0137 -0.4906 0.0081 -0.5606 0.0047 -0.6306 0.0026 -0.7007 0.0014 -0.7707 0.0008 -0.8407 0.0004 -0.9108 0.0002 -0.9808 0.0001 -1.0508 0.0000 -1.1209 0.0000 -1.1909 0.0000 -1.2609 0.0000 -1.3310 0.0000 -1.4010 0.0000 -1.4710 0.0000 -1.5411 0.0000 -1.6111 0.0000 -1.6811 0.0000 -1.7512 0.0000 -1.8212 0.0000 -1.8912 0.0000 -1.9613 0.0000 -2.0313 0.0000 -2.1013 0.0000 -2.1714 0.0000 -2.2414 0.0000 -2.3114 0.0000 -2.3815 0.0000 -2.4515 0.0000 -2.5215 0.0000 -2.5916 0.0000 -2.6616 0.0000 -2.7316 0.0000 -2.8017 0.0000 -2.8717 0.0000 -2.9417 0.0000 -3.0118 0.0000 -3.0818 0.0000 -3.1518 0.0000 -3.2219 0.0000 -3.2919 0.0000 -3.3619 0.0000 -3.4320 0.0000 -3.5020 0.0000 -Gene2 1 -250 150 -1 2 -2 4 5 --3.5862 0.0000 --3.5124 0.0000 --3.4385 0.0000 --3.3647 0.0000 --3.2909 0.0000 --3.2171 0.0001 --3.1432 0.0001 --3.0694 0.0002 --2.9956 0.0003 --2.9218 0.0005 --2.8479 0.0008 --2.7741 0.0012 --2.7003 0.0018 --2.6264 0.0028 --2.5526 0.0041 --2.4788 0.0060 --2.4050 0.0087 --2.3311 0.0124 --2.2573 0.0175 --2.1835 0.0242 --2.1097 0.0329 --2.0358 0.0441 --1.9620 0.0583 --1.8882 0.0759 --1.8143 0.0974 --1.7405 0.1230 --1.6667 0.1530 --1.5929 0.1874 --1.5190 0.2262 --1.4452 0.2689 --1.3714 0.3148 --1.2976 0.3631 --1.2237 0.4126 --1.1499 0.4617 --1.0761 0.5089 --1.0022 0.5525 --0.9284 0.5908 --0.8546 0.6224 --0.7808 0.6458 --0.7069 0.6600 --0.6331 0.6644 --0.5593 0.6588 --0.4855 0.6434 --0.4116 0.6190 --0.3378 0.5866 --0.2640 0.5475 --0.1901 0.5034 --0.1163 0.4558 --0.0425 0.4066 -0.0313 0.3573 -0.1052 0.3092 -0.1790 0.2636 -0.2528 0.2213 -0.3266 0.1830 -0.4005 0.1491 -0.4743 0.1197 -0.5481 0.0946 -0.6220 0.0736 -0.6958 0.0565 -0.7696 0.0426 -0.8434 0.0317 -0.9173 0.0233 -0.9911 0.0168 -1.0649 0.0119 -1.1387 0.0084 -1.2126 0.0058 -1.2864 0.0039 -1.3602 0.0026 -1.4341 0.0017 -1.5079 0.0011 -1.5817 0.0007 -1.6555 0.0005 -1.7294 0.0003 -1.8032 0.0002 -1.8770 0.0001 -1.9508 0.0001 -2.0247 0.0000 -2.0985 0.0000 -2.1723 0.0000 -2.2462 0.0000 -2.3200 0.0000 -2.3938 0.0000 -2.4676 0.0000 -2.5415 0.0000 -2.6153 0.0000 -2.6891 0.0000 -2.7629 0.0000 -2.8368 0.0000 -2.9106 0.0000 -2.9844 0.0000 -3.0583 0.0000 -3.1321 0.0000 -3.2059 0.0000 -3.2797 0.0000 -3.3536 0.0000 -3.4274 0.0000 -3.5012 0.0000 -3.5750 0.0000 -3.6489 0.0000 -3.7227 0.0000 -3.7965 0.0000 -Gene3 1 -250 150 -2 1 3 -1 5 --4.3571 0.0002 --4.2762 0.0002 --4.1954 0.0003 --4.1145 0.0004 --4.0336 0.0005 --3.9527 0.0007 --3.8719 0.0010 --3.7910 0.0013 --3.7101 0.0017 --3.6293 0.0022 --3.5484 0.0028 --3.4675 0.0036 --3.3866 0.0046 --3.3058 0.0059 --3.2249 0.0074 --3.1440 0.0093 --3.0632 0.0115 --2.9823 0.0143 --2.9014 0.0175 --2.8205 0.0214 --2.7397 0.0260 --2.6588 0.0313 --2.5779 0.0374 --2.4971 0.0445 --2.4162 0.0526 --2.3353 0.0617 --2.2544 0.0719 --2.1736 0.0833 --2.0927 0.0958 --2.0118 0.1095 --1.9310 0.1243 --1.8501 0.1403 --1.7692 0.1572 --1.6883 0.1750 --1.6075 0.1936 --1.5266 0.2127 --1.4457 0.2322 --1.3648 0.2518 --1.2840 0.2713 --1.2031 0.2904 --1.1222 0.3088 --1.0414 0.3263 --0.9605 0.3424 --0.8796 0.3570 --0.7987 0.3698 --0.7179 0.3806 --0.6370 0.3890 --0.5561 0.3951 --0.4753 0.3987 --0.3944 0.3996 --0.3135 0.3980 --0.2326 0.3937 --0.1518 0.3869 --0.0709 0.3778 -0.0100 0.3665 -0.0908 0.3532 -0.1717 0.3381 -0.2526 0.3216 -0.3335 0.3039 -0.4143 0.2852 -0.4952 0.2660 -0.5761 0.2464 -0.6569 0.2268 -0.7378 0.2074 -0.8187 0.1884 -0.8996 0.1700 -0.9804 0.1524 -1.0613 0.1358 -1.1422 0.1201 -1.2230 0.1056 -1.3039 0.0922 -1.3848 0.0800 -1.4657 0.0690 -1.5465 0.0591 -1.6274 0.0502 -1.7083 0.0425 -1.7891 0.0357 -1.8700 0.0297 -1.9509 0.0246 -2.0318 0.0203 -2.1126 0.0166 -2.1935 0.0135 -2.2744 0.0109 -2.3552 0.0087 -2.4361 0.0070 -2.5170 0.0055 -2.5979 0.0043 -2.6787 0.0034 -2.7596 0.0026 -2.8405 0.0020 -2.9213 0.0015 -3.0022 0.0012 -3.0831 0.0009 -3.1640 0.0007 -3.2448 0.0005 -3.3257 0.0004 -3.4066 0.0003 -3.4874 0.0002 -3.5683 0.0001 -3.6492 0.0001 -3.7301 0.0001 -Phenotype 1 -250 150 -2 3 4 -0 --3.5574 0.0004 --3.4806 0.0006 --3.4037 0.0008 --3.3268 0.0012 --3.2499 0.0016 --3.1731 0.0022 --3.0962 0.0030 --3.0193 0.0040 --2.9425 0.0054 --2.8656 0.0071 --2.7887 0.0093 --2.7118 0.0121 --2.6350 0.0155 --2.5581 0.0198 --2.4812 0.0250 --2.4044 0.0313 --2.3275 0.0389 --2.2506 0.0479 --2.1737 0.0584 --2.0969 0.0706 --2.0200 0.0846 --1.9431 0.1005 --1.8663 0.1184 --1.7894 0.1381 --1.7125 0.1597 --1.6356 0.1831 --1.5588 0.2081 --1.4819 0.2343 --1.4050 0.2615 --1.3282 0.2893 --1.2513 0.3173 --1.1744 0.3448 --1.0975 0.3714 --1.0207 0.3966 --0.9438 0.4197 --0.8669 0.4402 --0.7901 0.4576 --0.7132 0.4716 --0.6363 0.4816 --0.5594 0.4875 --0.4826 0.4891 --0.4057 0.4864 --0.3288 0.4794 --0.2520 0.4684 --0.1751 0.4535 --0.0982 0.4353 --0.0213 0.4140 -0.0555 0.3904 -0.1324 0.3648 -0.2093 0.3379 -0.2861 0.3102 -0.3630 0.2822 -0.4399 0.2545 -0.5168 0.2275 -0.5936 0.2016 -0.6705 0.1770 -0.7474 0.1541 -0.8242 0.1329 -0.9011 0.1136 -0.9780 0.0963 -1.0549 0.0809 -1.1317 0.0673 -1.2086 0.0556 -1.2855 0.0455 -1.3623 0.0368 -1.4392 0.0296 -1.5161 0.0236 -1.5930 0.0186 -1.6698 0.0146 -1.7467 0.0113 -1.8236 0.0087 -1.9004 0.0066 -1.9773 0.0050 -2.0542 0.0037 -2.1311 0.0028 -2.2079 0.0020 -2.2848 0.0015 -2.3617 0.0011 -2.4385 0.0008 -2.5154 0.0005 -2.5923 0.0004 -2.6692 0.0003 -2.7460 0.0002 -2.8229 0.0001 -2.8998 0.0001 -2.9766 0.0001 -3.0535 0.0000 -3.1304 0.0000 -3.2073 0.0000 -3.2841 0.0000 -3.3610 0.0000 -3.4379 0.0000 -3.5147 0.0000 -3.5916 0.0000 -3.6685 0.0000 -3.7454 0.0000 -3.8222 0.0000 -3.8991 0.0000 -3.9760 0.0000 -4.0528 0.0000 -4.1297 0.0000 diff --git a/sourcecodes/data/example_sci/Llunlevels.txt b/sourcecodes/data/example_sci/Llunlevels.txt deleted file mode 100644 index 714e56bd..00000000 --- a/sourcecodes/data/example_sci/Llunlevels.txt +++ /dev/null @@ -1,2 +0,0 @@ -Genotype 1 2 - diff --git a/sourcecodes/data/example_sci/Llunnode.txt b/sourcecodes/data/example_sci/Llunnode.txt deleted file mode 100644 index 7ed6ff82..00000000 --- a/sourcecodes/data/example_sci/Llunnode.txt +++ /dev/null @@ -1 +0,0 @@ -5 diff --git a/sourcecodes/data/example_sci/Llunrows.txt b/sourcecodes/data/example_sci/Llunrows.txt deleted file mode 100644 index c15fb720..00000000 --- a/sourcecodes/data/example_sci/Llunrows.txt +++ /dev/null @@ -1 +0,0 @@ -501 diff --git a/sourcecodes/data/example_sci/Lluparameters.txt b/sourcecodes/data/example_sci/Lluparameters.txt deleted file mode 100644 index 11583baa..00000000 --- a/sourcecodes/data/example_sci/Lluparameters.txt +++ /dev/null @@ -1,21 +0,0 @@ -Genotype -Discrete node with 2 states -1 0.4860 -2 0.5140 - -Gene3 -Continuous node --0.0150 1.0589 - -Gene2 -Continuous node -0.1381 1.1779 - -Phenotype -Continuous node -0.0693 1.5989 - -Gene1 -Continuous node -0.1745 1.5275 - diff --git a/sourcecodes/data/example_sci/Lluparent.txt b/sourcecodes/data/example_sci/Lluparent.txt deleted file mode 100644 index b8626c4c..00000000 --- a/sourcecodes/data/example_sci/Lluparent.txt +++ /dev/null @@ -1 +0,0 @@ -4 diff --git a/sourcecodes/data/example_sci/Llustructure_old.txt b/sourcecodes/data/example_sci/Llustructure_old.txt deleted file mode 100644 index 5b464577..00000000 --- a/sourcecodes/data/example_sci/Llustructure_old.txt +++ /dev/null @@ -1,5 +0,0 @@ -Genotype 0.4860 0.5140 -Gene3 0.0001 0.0001 0.0001 0.0001 0.0002 0.0002 0.0003 0.0004 0.0006 0.0008 0.0010 0.0013 0.0018 0.0023 0.0029 0.0037 0.0047 0.0059 0.0074 0.0092 0.0113 0.0139 0.0170 0.0206 0.0248 0.0297 0.0354 0.0419 0.0493 0.0576 0.0669 0.0773 0.0887 0.1012 0.1147 0.1292 0.1447 0.1610 0.1781 0.1958 0.2139 0.2323 0.2507 0.2688 0.2866 0.3036 0.3197 0.3345 0.3479 0.3597 0.3695 0.3773 0.3828 0.3861 0.3870 0.3855 0.3817 0.3756 0.3673 0.3570 0.3449 0.3311 0.3160 0.2996 0.2824 0.2645 0.2463 0.2279 0.2095 0.1915 0.1740 0.1570 0.1409 0.1256 0.1114 0.0981 0.0859 0.0747 0.0646 0.0555 0.0474 0.0402 0.0340 0.0285 0.0237 0.0197 0.0162 0.0132 0.0108 0.0087 0.0070 0.0056 0.0044 0.0035 0.0027 0.0021 0.0016 0.0013 0.0010 0.0007 0.0006 -Gene1 0.0009 0.0012 0.0015 0.0019 0.0024 0.0030 0.0037 0.0046 0.0056 0.0069 0.0083 0.0101 0.0121 0.0145 0.0174 0.0206 0.0243 0.0286 0.0335 0.0389 0.0451 0.0520 0.0597 0.0682 0.0775 0.0876 0.0986 0.1105 0.1231 0.1366 0.1508 0.1657 0.1811 0.1971 0.2134 0.2300 0.2467 0.2633 0.2797 0.2956 0.3110 0.3256 0.3392 0.3517 0.3629 0.3726 0.3808 0.3873 0.3920 0.3948 0.3958 0.3948 0.3920 0.3872 0.3807 0.3726 0.3628 0.3516 0.3391 0.3254 0.3108 0.2955 0.2795 0.2631 0.2465 0.2299 0.2133 0.1969 0.1810 0.1655 0.1507 0.1365 0.1230 0.1103 0.0985 0.0875 0.0774 0.0681 0.0596 0.0520 0.0451 0.0389 0.0334 0.0286 0.0243 0.0206 0.0173 0.0145 0.0121 0.0101 0.0083 0.0068 0.0056 0.0046 0.0037 0.0030 0.0024 0.0019 0.0015 0.0012 0.0009 -Phenotype 0.0010 0.0013 0.0016 0.0021 0.0026 0.0033 0.0042 0.0052 0.0065 0.0080 0.0098 0.0120 0.0146 0.0176 0.0212 0.0253 0.0300 0.0354 0.0416 0.0486 0.0564 0.0651 0.0748 0.0854 0.0970 0.1096 0.1230 0.1374 0.1526 0.1685 0.1850 0.2021 0.2195 0.2370 0.2545 0.2718 0.2887 0.3049 0.3202 0.3344 0.3473 0.3587 0.3684 0.3763 0.3822 0.3860 0.3877 0.3872 0.3846 0.3798 0.3731 0.3644 0.3539 0.3418 0.3283 0.3136 0.2979 0.2813 0.2643 0.2468 0.2293 0.2118 0.1945 0.1777 0.1614 0.1458 0.1310 0.1170 0.1039 0.0918 0.0806 0.0704 0.0612 0.0529 0.0454 0.0388 0.0329 0.0278 0.0234 0.0195 0.0162 0.0134 0.0110 0.0090 0.0073 0.0059 0.0047 0.0038 0.0030 0.0024 0.0019 0.0015 0.0011 0.0009 0.0007 0.0005 0.0004 0.0003 0.0002 0.0002 0.0001 -Gene2 0.0008 0.0010 0.0013 0.0016 0.0020 0.0026 0.0032 0.0041 0.0050 0.0062 0.0077 0.0094 0.0114 0.0138 0.0166 0.0199 0.0237 0.0281 0.0331 0.0388 0.0453 0.0526 0.0607 0.0696 0.0795 0.0903 0.1021 0.1147 0.1282 0.1426 0.1578 0.1736 0.1900 0.2069 0.2241 0.2414 0.2587 0.2758 0.2924 0.3084 0.3236 0.3377 0.3506 0.3621 0.3719 0.3800 0.3863 0.3905 0.3927 0.3929 0.3910 0.3870 0.3811 0.3732 0.3636 0.3524 0.3397 0.3258 0.3108 0.2949 0.2783 0.2613 0.2440 0.2267 0.2095 0.1925 0.1760 0.1601 0.1449 0.1304 0.1167 0.1039 0.0920 0.0811 0.0711 0.0620 0.0537 0.0464 0.0398 0.0340 0.0288 0.0243 0.0205 0.0171 0.0142 0.0117 0.0097 0.0079 0.0064 0.0052 0.0042 0.0034 0.0027 0.0021 0.0017 0.0013 0.0010 0.0008 0.0006 0.0005 0.0004 diff --git a/sourcecodes/data/example_sci/Lluthr.txt b/sourcecodes/data/example_sci/Lluthr.txt deleted file mode 100644 index 2eb3c4fe..00000000 --- a/sourcecodes/data/example_sci/Lluthr.txt +++ /dev/null @@ -1 +0,0 @@ -0.5 diff --git a/sourcecodes/data/example_sci/Llutier.txt b/sourcecodes/data/example_sci/Llutier.txt deleted file mode 100644 index da7084fb..00000000 --- a/sourcecodes/data/example_sci/Llutier.txt +++ /dev/null @@ -1 +0,0 @@ -3,Tier1,1,Genotype,Tier2,3,Gene1,Gene2,Gene3,Tier3,1,Phenotype, \ No newline at end of file diff --git a/sourcecodes/data/example_sci/Llutype.txt b/sourcecodes/data/example_sci/Llutype.txt deleted file mode 100644 index 9ea66ce4..00000000 --- a/sourcecodes/data/example_sci/Llutype.txt +++ /dev/null @@ -1,2 +0,0 @@ -Genotype Gene3 Gene2 Phenotype Gene1 -2 1 1 1 1 diff --git a/sourcecodes/data/example_sci/Lluvar.txt b/sourcecodes/data/example_sci/Lluvar.txt deleted file mode 100644 index 56a6051c..00000000 --- a/sourcecodes/data/example_sci/Lluvar.txt +++ /dev/null @@ -1 +0,0 @@ -1 \ No newline at end of file diff --git a/sourcecodes/data/example_sci/Lluvardata.txt b/sourcecodes/data/example_sci/Lluvardata.txt deleted file mode 100644 index 56a6051c..00000000 --- a/sourcecodes/data/example_sci/Lluvardata.txt +++ /dev/null @@ -1 +0,0 @@ -1 \ No newline at end of file diff --git a/sourcecodes/data/example_sci/Lluvarname.txt b/sourcecodes/data/example_sci/Lluvarname.txt deleted file mode 100644 index 3fe283bd..00000000 --- a/sourcecodes/data/example_sci/Lluvarname.txt +++ /dev/null @@ -1 +0,0 @@ -Genotype \ No newline at end of file diff --git a/sourcecodes/data/example_sci/Lluwhite.txt b/sourcecodes/data/example_sci/Lluwhite.txt deleted file mode 100644 index 83e81b8b..00000000 --- a/sourcecodes/data/example_sci/Lluwhite.txt +++ /dev/null @@ -1 +0,0 @@ -From To diff --git a/sourcecodes/data/example_sci/old/Llurun_evidencemodified.sh b/sourcecodes/data/example_sci/old/Llurun_evidencemodified.sh deleted file mode 100644 index ee0dde13..00000000 --- a/sourcecodes/data/example_sci/old/Llurun_evidencemodified.sh +++ /dev/null @@ -1,38 +0,0 @@ -#!/bin/sh -# script for execution of deployed applications -# -# Sets up the MCR environment for the current $ARCH and executes -# the specified command. -# -exe_name=$0 -exe_dir=`dirname "$0"` -echo "------------------------------------------" -if [ "x$1" = "x" ]; then - echo Usage: - echo $0 \<deployedMCRroot\> args -else - echo Setting up environment variables - MCRROOT="$1" - echo --- - LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; - MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; - XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; - export LD_LIBRARY_PATH; - export XAPPLRESDIR; - echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; - shift 1 - args= - while [ $# -gt 0 ]; do - token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank - args="${args} ${token}" - shift - done - "${exe_dir}"/evidencemodified Llu -fi -exit diff --git a/sourcecodes/data/example_sci/old/Llurun_initialstructure.sh b/sourcecodes/data/example_sci/old/Llurun_initialstructure.sh deleted file mode 100644 index adde14dd..00000000 --- a/sourcecodes/data/example_sci/old/Llurun_initialstructure.sh +++ /dev/null @@ -1,38 +0,0 @@ -#!/bin/sh -# script for execution of deployed applications -# -# Sets up the MCR environment for the current $ARCH and executes -# the specified command. -# -exe_name=$0 -exe_dir=`dirname "$0"` -echo "------------------------------------------" -if [ "x$1" = "x" ]; then - echo Usage: - echo $0 \<deployedMCRroot\> args -else - echo Setting up environment variables - MCRROOT="$1" - echo --- - LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; - MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; - XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; - export LD_LIBRARY_PATH; - export XAPPLRESDIR; - echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; - shift 1 - args= - while [ $# -gt 0 ]; do - token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank - args="${args} ${token}" - shift - done - "${exe_dir}"/initialstructure Llu -fi -exit diff --git a/sourcecodes/data/example_time_series/TEbban.txt b/sourcecodes/data/example_time_series/TEbban.txt deleted file mode 100644 index 7b0aa551..00000000 --- a/sourcecodes/data/example_time_series/TEbban.txt +++ /dev/null @@ -1,73 +0,0 @@ -From To -TraitA_T1 Genotype -TraitB_T1 Genotype -TraitC_T1 Genotype -TraitA_T2 Genotype -TraitB_T2 Genotype -TraitC_T2 Genotype -TraitA_T3 Genotype -TraitB_T3 Genotype -TraitC_T3 Genotype -TraitA_T1 Genotype -TraitB_T1 Genotype -TraitC_T1 Genotype -TraitA_T2 TraitA_T1 -TraitA_T2 TraitB_T1 -TraitA_T2 TraitC_T1 -TraitB_T2 TraitA_T1 -TraitB_T2 TraitB_T1 -TraitB_T2 TraitC_T1 -TraitC_T2 TraitA_T1 -TraitC_T2 TraitB_T1 -TraitC_T2 TraitC_T1 -TraitA_T3 TraitA_T1 -TraitA_T3 TraitB_T1 -TraitA_T3 TraitC_T1 -TraitB_T3 TraitA_T1 -TraitB_T3 TraitB_T1 -TraitB_T3 TraitC_T1 -TraitC_T3 TraitA_T1 -TraitC_T3 TraitB_T1 -TraitC_T3 TraitC_T1 -TraitA_T2 Genotype -TraitB_T2 Genotype -TraitC_T2 Genotype -TraitA_T2 TraitA_T1 -TraitA_T2 TraitB_T1 -TraitA_T2 TraitC_T1 -TraitB_T2 TraitA_T1 -TraitB_T2 TraitB_T1 -TraitB_T2 TraitC_T1 -TraitC_T2 TraitA_T1 -TraitC_T2 TraitB_T1 -TraitC_T2 TraitC_T1 -TraitA_T3 TraitA_T2 -TraitA_T3 TraitB_T2 -TraitA_T3 TraitC_T2 -TraitB_T3 TraitA_T2 -TraitB_T3 TraitB_T2 -TraitB_T3 TraitC_T2 -TraitC_T3 TraitA_T2 -TraitC_T3 TraitB_T2 -TraitC_T3 TraitC_T2 -TraitA_T3 Genotype -TraitB_T3 Genotype -TraitC_T3 Genotype -TraitA_T3 TraitA_T1 -TraitA_T3 TraitB_T1 -TraitA_T3 TraitC_T1 -TraitB_T3 TraitA_T1 -TraitB_T3 TraitB_T1 -TraitB_T3 TraitC_T1 -TraitC_T3 TraitA_T1 -TraitC_T3 TraitB_T1 -TraitC_T3 TraitC_T1 -TraitA_T3 TraitA_T2 -TraitA_T3 TraitB_T2 -TraitA_T3 TraitC_T2 -TraitB_T3 TraitA_T2 -TraitB_T3 TraitB_T2 -TraitB_T3 TraitC_T2 -TraitC_T3 TraitA_T2 -TraitC_T3 TraitB_T2 -TraitC_T3 TraitC_T2 diff --git a/sourcecodes/data/example_time_series/TEbcontinuous_input.txt b/sourcecodes/data/example_time_series/TEbcontinuous_input.txt deleted file mode 100644 index 34b3b957..00000000 --- a/sourcecodes/data/example_time_series/TEbcontinuous_input.txt +++ /dev/null @@ -1,503 +0,0 @@ -Genotype TraitA_T1 TraitA_T2 TraitA_T3 TraitB_T1 TraitB_T2 TraitB_T3 TraitC_T1 TraitC_T2 TraitC_T3 -2 1 1 1 1 1 1 1 1 1 -1 1.4297 -0.13715 -0.33041 1.3972 -0.17802 1.0272 -1.322 0.0027715 0.85527 -1 2.0687 -2.5819 -0.71386 -0.25338 0.64604 -0.25402 -1.1947 0.60348 1.5977 -2 0.52771 0.19656 0.40967 0.039336 1.57 -0.036341 -1.6301 -0.15434 0.93397 -1 1.7929 -0.85399 -0.21102 0.36528 0.14997 -0.072283 0.25214 1.8044 1.4149 -1 -0.090929 -0.17288 -2.808 0.79192 -1.5175 -0.90041 0.39689 -0.18146 -0.55432 -1 0.86086 -0.049472 -0.82074 0.18954 0.51157 0.30995 -0.50952 -0.047852 0.25632 -1 0.37794 -0.49737 -1.5634 -0.61123 -1.6172 -0.025387 -0.50463 1.0061 -0.55909 -1 0.061886 -1.3173 -0.38674 0.66584 0.023432 -1.0821 0.14268 -0.21189 -0.60498 -1 0.96427 -1.6652 -0.61177 -0.295 0.12641 -1.6644 -1.0372 0.033566 1.3366 -2 0.16295 0.59047 0.7747 -0.32623 1.6996 -0.042892 -0.0034198 -0.30944 0.67765 -1 1.7419 -0.94567 -1.8121 0.80385 0.23144 -1.4004 2.0605 -0.83835 1.3823 -2 -0.92772 0.34934 0.87438 -0.62792 0.7641 -0.5865 0.24522 0.6353 -0.0017539 -2 -2.9367 1.609 2.0928 0.61651 -2.0775 -0.24164 -0.3587 -0.95545 -3.0393 -1 0.52613 0.43773 0.75866 0.73066 0.46388 -1.4681 -1.5908 1.6872 0.89314 -2 -0.10721 1.7759 1.6821 -0.56868 1.6447 -0.92002 -0.27447 -0.62549 0.91373 -1 -1.073 -1.8228 -0.34751 -0.54007 -1.7593 -0.7431 0.61821 -0.054988 -1.7414 -2 -1.0532 1.0319 1.0531 -0.09473 -0.82174 0.45084 -0.38299 -0.6361 -0.90619 -1 1.7064 -1.8984 -2.6061 0.99661 -0.67065 0.17936 0.97103 0.38751 -0.11531 -2 -3.2527 -1.1361 0.56795 -0.39584 -1.5189 -1.7637 1.2149 -1.3971 -1.8622 -1 2.3471 -2.1036 -2.092 1.544 -0.21178 0.3446 1.0474 -0.64427 0.73628 -2 -0.63792 1.3156 0.92169 -0.67815 1.4089 1.1938 0.82905 0.16566 0.09164 -2 -2.0379 0.74861 0.16368 0.58693 -0.67589 0.81824 0.33633 -0.19727 -1.243 -2 -1.7441 2.4915 0.89809 -1.0265 0.35767 -1.159 0.63023 0.97341 0.29971 -2 -1.9637 0.94259 1.169 1.9451 -0.96485 0.49152 -1.1393 -1.2415 -0.58885 -2 -1.0536 2.4253 0.94996 -2.3874 0.23825 0.224 -0.073329 -1.2231 -0.24801 -1 -0.032849 -1.1426 -1.1507 -0.10711 -1.6383 -0.80394 1.5126 0.28303 0.083105 -2 -2.2192 0.84322 0.73021 0.71513 -0.79164 0.61126 -1.2986 0.89057 -1.4685 -1 0.42429 -0.65294 -1.9493 -0.77983 -1.2761 0.99263 0.051924 0.83436 -0.0079187 -2 -0.85155 0.9691 1.1731 1.0504 0.39302 0.030178 -0.70262 -0.014959 -0.31945 -1 -1.4662 -0.5934 -2.0914 -0.76279 -1.7903 0.94245 0.96374 -1.6733 -1.8091 -1 2.0716 -0.52844 -0.183 -0.032514 1.4843 0.28402 0.37221 -1.4476 2.8712 -2 -1.0437 1.5094 -0.23396 -0.84804 0.43785 0.19966 0.3728 0.15043 0.10549 -1 1.0647 -0.35638 -1.0854 0.78756 -0.99107 0.098816 -0.32975 -0.68451 0.71344 -1 0.58146 -0.46614 -2.9113 -0.032848 0.052376 -0.36411 0.87461 0.28033 -0.61848 -2 -0.6251 1.3257 0.36072 -0.042944 0.66071 -0.33981 2.0873 1.2161 0.089706 -1 1.57 -1.26 -2.0278 1.5331 -1.5343 0.019093 -0.73556 1.0316 0.41452 -2 -1.6998 1.0471 -0.0095397 -0.72037 0.30428 0.18062 0.86143 -0.31801 -0.86127 -2 -1.0544 1.9761 1.1994 1.7876 -0.24561 0.01978 1.4123 0.19675 -0.022687 -2 0.38235 2.3798 0.42045 0.97856 1.7099 0.20914 1.0505 1.9808 1.482 -1 1.8991 -2.1024 -0.53897 0.20839 1.3568 -1.4725 0.16263 0.069291 1.5719 -2 -2.2901 1.333 1.1433 -0.53918 -0.41394 -1.0484 -1.2332 0.068735 -2.0475 -1 1.9123 0.027091 -0.067604 -0.86429 -0.73426 0.65875 -0.59697 1.1903 -0.068242 -2 -1.8834 1.7232 1.3404 -0.096031 -0.1779 1.2453 0.23601 -0.81722 -0.8237 -1 -0.33029 -1.4141 -0.24236 0.3117 -0.28893 -1.536 0.63391 0.97915 -0.30591 -2 -1.0004 -0.17153 0.80903 -1.3152 -0.28004 -2.5356 0.25062 -1.6221 -0.2114 -2 0.92525 0.78374 0.44585 0.87215 0.67229 1.6991 -0.45347 0.21751 0.95898 -1 0.47842 -0.79727 0.0099566 0.8919 0.31135 -0.62503 -0.99073 1.5268 0.43918 -1 -0.52618 -0.57407 -1.5704 -1.9977 -1.8715 0.99632 1.124 2.1038 -1.3776 -2 -0.8334 1.5897 0.82506 -0.045645 0.23407 -1.1836 -0.86756 0.52102 0.23901 -1 1.0179 -0.6531 -0.53277 0.32403 1.226 -0.27361 -1.5967 -0.20229 1.5482 -2 -0.82762 0.26361 2.4807 -0.49628 -0.44792 1.295 -1.0416 0.29424 -1.0789 -1 1.569 0.14532 -1.3216 -1.1622 -0.46791 0.10723 -0.74658 1.7246 0.087136 -1 0.93783 -1.0786 -1.6758 -2.3367 -1.4745 -0.78743 0.85399 0.0085691 0.79439 -2 -2.9555 1.122 1.8506 0.65602 -0.66402 0.25697 0.75048 0.21667 -2.1374 -2 -1.5843 0.24076 0.71071 -0.16959 -1.0254 0.44363 1.1218 1.0872 -1.2214 -2 0.82202 1.2273 -0.2641 1.1674 0.72576 -0.6655 -0.33565 -0.57264 1.0462 -1 0.83408 -0.90235 -0.3935 0.086621 1.5353 -0.37978 -0.040736 0.54884 1.0078 -2 -0.30426 0.26772 1.1941 0.52251 1.9104 -0.10785 0.40619 1.0277 1.0258 -1 0.81767 -2.1549 -1.0066 -1.1068 -0.3204 0.70458 -1.0728 0.7519 0.49365 -1 0.67964 -1.4603 -1.4347 0.76332 -0.97228 -0.9221 1.0028 0.98058 -0.18843 -1 1.3794 1.3504 -0.081978 0.31556 0.32948 -2.6404 -1.0646 -1.2234 0.23259 -2 0.11139 1.1587 0.66712 -0.46969 0.42 0.31504 0.4697 2.6848 0.14172 -2 0.28767 -0.065134 1.3282 0.43016 1.4838 -0.63014 0.62746 0.93536 1.6029 -1 2.4805 -0.73041 -2.1434 -0.61007 0.89886 -0.34815 0.53564 -0.83092 1.359 -2 -1.7925 1.8972 1.3604 -1.0549 -1.2652 1.3518 -0.049884 -1.2196 -0.88755 -2 0.47058 1.4302 -0.034783 -0.11473 1.0041 1.0036 -0.46028 1.0611 1.2613 -1 2.6579 -0.31683 -1.1155 -0.65359 0.96673 0.64757 1.2194 -0.90696 1.8217 -2 -0.29097 0.91367 1.5236 -1.0735 0.71821 -2.1156 0.11456 -0.37247 0.64467 -1 0.68355 0.40105 -1.7852 1.3169 0.6179 -1.3712 0.05004 -0.65314 1.1103 -2 -1.8738 2.4006 1.8782 -2.1995 0.49239 -0.6918 -0.70293 -0.74597 -0.3239 -2 -0.36364 1.0943 0.62818 0.1429 0.85651 -0.96809 0.12213 -0.94343 0.42158 -1 0.40116 -1.4861 -0.049336 0.72652 0.1255 -1.1187 -0.38912 0.060771 -0.29816 -1 1.1364 -0.828 -0.44475 0.81314 -0.45463 0.73019 -0.57071 0.32484 0.046647 -1 0.91034 -0.95145 0.43201 0.76891 -1.5873 -0.38206 0.28662 0.23105 0.11712 -2 -0.27208 2.2223 1.2591 0.70003 0.89367 1.0322 0.41848 0.96986 0.17078 -1 1.0624 0.048938 -1.002 -1.0531 -0.28385 0.30108 0.62074 0.39829 0.27699 -1 0.57701 0.094694 -1.3989 0.15018 -0.44071 0.74259 -1.2663 0.33047 -0.45917 -2 0.11706 2.795 0.35611 -0.68956 2.1138 0.36961 -1.3806 -1.1414 1.9844 -2 -1.2526 0.11214 0.40367 0.83874 0.37692 1.4445 -0.77317 -0.40136 -0.42244 -2 -1.4336 -0.32339 1.3392 0.7596 0.0091892 1.0806 -0.81666 -0.39415 -1.9858 -2 0.5554 1.0643 0.50191 0.37325 2.0674 0.38376 -0.13487 -0.37455 0.64987 -1 1.6028 1.107 -0.9114 0.97541 0.88036 1.66 1.4044 -0.46919 0.80681 -1 1.6228 -1.3906 -1.8136 0.56649 -0.87823 -1.8194 0.30195 1.2461 -0.07587 -2 -0.97076 1.5212 1.1269 0.4029 0.19516 -1.5031 0.85567 0.18958 -0.20832 -1 1.3197 -1.8366 -0.24704 0.34608 -0.77044 1.1945 1.6826 0.91217 0.30079 -2 -0.38255 -0.2812 0.27203 -1.2858 0.86735 -0.54848 -1.3505 0.57415 0.12916 -2 -2.878 1.5199 0.74535 -1.4308 -2.2635 -1.4245 0.89574 0.037623 -2.7177 -2 -1.7715 0.74699 0.96279 -1.306 -0.36677 -0.36708 1.4602 -0.85456 -0.40898 -2 -1.3391 1.2012 0.7409 -1.3102 0.40133 -0.076096 0.51637 0.33495 0.25003 -1 0.65017 -0.57483 -1.7053 0.21131 -0.38338 1.6998 -0.70762 1.5248 0.1473 -1 -0.14679 -1.5979 -1.2765 1.041 -0.00072624 -0.19359 0.17338 -0.96136 0.51031 -1 1.8145 -1.0318 -1.0633 -0.098291 1.1755 -0.57137 1.7174 -0.14248 1.4282 -1 0.80523 -0.96777 -1.8989 0.063236 -1.2783 0.72214 -0.99392 -0.017507 -0.52743 -1 1.479 -1.2772 -1.1642 0.13841 0.83641 0.12311 1.2557 -0.37799 1.6174 -2 -1.423 -0.24793 0.49465 1.1461 -1.0896 -0.16348 -0.76872 -0.40631 -1.8538 -1 1.5733 -0.26875 0.42772 -0.75241 -0.0059677 0.65109 0.67958 0.47183 -0.10405 -1 1.7405 -1.3987 -0.91804 0.30851 -0.37195 -0.30858 -1.2002 0.51775 0.60525 -1 1.0571 1.4951 -2.5784 0.023453 0.064363 0.2392 0.93292 -0.37825 0.58165 -2 -0.35492 0.69359 1.5161 0.58499 -0.44209 -0.09004 -0.70298 -1.1197 -0.12251 -1 0.61469 -1.1159 0.11919 0.1796 -0.94894 0.012732 -0.69651 0.21311 -0.52283 -1 -1.2282 -0.050497 -0.83443 -0.28534 -2.0051 -1.3528 0.096769 -0.67245 -1.2668 -1 1.0411 -0.016327 -1.927 -0.10683 -0.70277 -1.4696 -0.021181 -0.34105 0.46198 -2 0.64635 0.84883 1.6319 0.2406 1.8836 0.31359 -0.69264 0.96691 1.3021 -2 -0.3604 0.050276 0.95661 0.18902 1.5034 1.3017 -0.045011 -0.92727 0.70494 -2 0.60646 1.598 1.395 -1.3791 1.8106 0.097276 0.74515 -0.4425 0.62478 -2 -0.099653 -0.54799 -0.1078 -0.18908 1.4643 -0.49221 0.050585 -1.2949 1.4842 -2 -0.98803 0.016928 1.2978 -0.29336 -0.2433 -0.90577 -0.18704 -0.22856 -0.39148 -2 -1.2267 0.82318 0.77338 0.0029744 0.15114 1.4265 1.6722 -0.18878 0.083877 -2 0.32455 0.48697 0.87077 -1.2598 0.89457 -0.2656 -0.4774 -0.22382 0.86019 -2 -1.6768 0.28366 1.7541 1.4309 -1.0277 -0.49835 -0.31204 -0.04057 -2.2507 -2 -0.83915 0.98617 0.024566 0.14541 0.40801 -0.010211 1.7726 -1.3709 0.30366 -2 -0.12663 0.15335 0.70774 2.1504 1.6066 -0.39836 1.078 -0.017324 0.94477 -1 1.1185 -0.39853 -0.011251 -0.0047654 -0.018256 -0.97102 1.8801 0.5724 0.70777 -2 -0.96731 -0.023776 1.2924 -0.94814 1.0413 0.3092 -0.06342 -0.032081 -0.22356 -1 1.1481 -1.0434 -2.2223 -1.2686 0.27026 -0.40422 -0.34583 2.2763 -0.16972 -2 -0.73981 1.2266 0.71139 -1.5638 0.084373 0.09421 -0.94629 -0.73173 -0.13897 -1 0.10133 0.032746 -1.5397 -1.7164 -0.96537 0.18106 0.47324 -0.32186 -0.44953 -1 2.3032 0.37332 -1.7518 -0.97719 0.21786 -0.29424 -1.6122 -0.3313 0.34243 -2 0.30487 0.96988 0.7649 1.2021 0.93113 -0.55965 -1.8153 -0.34231 1.0416 -1 0.9734 -1.1492 0.54826 0.24535 -1.1123 -0.013547 -0.72623 0.9444 -0.19613 -1 1.3053 -1.4227 -2.1548 -0.99601 0.99751 0.37094 -0.24703 -0.92319 0.81674 -2 -0.0084211 1.8266 0.94339 -0.96922 2.2496 0.14622 2.3348 -0.34993 1.4151 -1 0.64848 -1.4999 -0.79935 -0.18624 -2.4443 0.91037 -0.16866 -0.15122 -1.2117 -1 0.99806 -1.9897 -0.90507 0.86062 -0.34118 -0.4535 -0.54746 1.5108 0.91863 -1 -0.30169 -1.2768 -1.1305 -0.01759 0.06726 -0.39978 0.52015 0.96655 0.12442 -1 0.76671 -0.91781 -2.0919 0.37685 -0.19301 0.73072 1.2156 1.439 0.0070513 -2 0.66141 0.90111 1.0491 -0.66199 1.9568 -1.2392 0.18616 1.0926 1.652 -1 2.2346 0.19579 -0.82941 0.65367 0.48104 -0.33862 0.11669 0.66087 1.1783 -2 -1.3061 1.9587 1.3667 1.1907 -0.51821 -0.2974 -1.0178 0.34352 -0.018939 -2 -2.4636 0.65586 1.618 -0.50642 -0.63857 -0.65954 -0.9133 0.027975 -1.4977 -1 0.89124 -0.8583 0.34126 -0.30785 0.91808 -2.22 1.2944 -0.27909 1.487 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0.86785 1.3512 -0.89236 -2 -0.54365 0.8237 -0.31856 -1.6296 0.73174 0.89915 0.91228 -0.66788 0.075926 -1 0.65472 -2.4675 -1.2267 -0.64632 -0.24147 0.5015 -0.24368 1.7307 -0.33117 -1 1.9061 -2.4358 -0.62051 -0.40306 0.35877 0.13681 0.5665 1.1077 0.90585 -1 -0.34786 -0.97138 -1.3607 0.74793 -2.3185 1.1517 0.35912 -0.22501 -1.7136 -1 1.509 -0.58183 -1.336 0.095131 -1.0719 -0.17454 -0.42425 0.21663 0.41672 -2 -1.1281 0.73596 1.3241 0.75066 -0.0098067 0.94941 -0.88569 0.96608 -0.58258 -1 2.0808 -1.2665 -0.27892 0.034005 1.5957 0.34276 -1.3939 0.20516 1.0361 -2 -0.27208 1.3514 0.78429 0.54442 1.2344 -1.0745 0.28837 -0.84074 -0.20416 -1 2.5732 -1.8429 0.35018 0.47113 -0.22532 -1.779 1.5326 -1.0015 1.0285 -1 1.524 -2.2514 -1.7375 -0.45648 1.0921 -1.1141 1.436 0.99093 1.3581 -1 0.60324 -0.46804 -0.11489 -2.454 -2.7665 0.61676 -1.5213 -1.192 -1.4163 -2 0.29712 1.188 0.57954 1.3259 0.95488 -0.70707 0.067457 0.47216 1.0369 -2 -0.97992 0.019053 1.3311 -0.33347 0.2814 -1.2616 0.90909 -1.0725 -0.62617 -2 -0.9056 0.73973 0.35093 -2.111 -0.50769 1.2491 0.64846 -1.0716 -0.35201 -1 1.3209 1.9154 -0.56509 0.70008 -1.6874 -0.92485 1.2406 1.7231 0.39622 -2 0.10632 0.88089 1.1544 0.27737 2.4332 -0.063819 -0.084136 -0.58305 1.1337 -1 0.7003 -1.4112 0.77725 0.95921 -1.239 -2.6684 -0.48008 -0.92359 -0.94882 -2 -2.0912 0.21124 1.0428 1.3279 -0.6659 -0.89398 0.5482 -0.029518 -1.2925 -2 -1.1484 2.2537 1.3423 -0.20816 0.31427 1.3603 1.6596 -0.49629 -0.63146 -1 1.2996 -2.8499 -0.97843 0.57176 -1.0424 -0.30734 -1.7632 -0.64856 -0.28028 -1 2.4392 -0.85404 -0.1262 -0.054289 0.1684 -1.3913 -0.4719 1.0582 1.4183 -2 -2.8357 2.1818 1.307 -1.1424 -0.97969 0.53689 0.33598 -0.11592 -2.0398 -2 -3.381 0.65778 0.8815 0.35115 -1.0556 -0.15942 -0.15958 0.57712 -2.8992 -1 1.9169 -0.15977 -1.1239 0.80773 -0.63434 -0.77712 -0.74684 0.97499 0.8461 -1 1.3703 -1.0164 0.45114 0.073799 1.259 0.40628 -0.11775 0.14354 2.0331 -2 -0.57067 -0.26266 0.56169 0.65535 0.78349 -0.66788 -0.41928 -0.77901 -0.27518 -1 -0.31373 -3.348 0.66363 -0.88205 -0.69595 1.0783 -1.9735 1.7579 -0.011735 - diff --git a/sourcecodes/data/example_time_series/TEbgraphviz.txt b/sourcecodes/data/example_time_series/TEbgraphviz.txt deleted file mode 100644 index d8bbfe4b..00000000 --- a/sourcecodes/data/example_time_series/TEbgraphviz.txt +++ /dev/null @@ -1,11 +0,0 @@ -digraph G { -size="10,10"; ratio = fill; -node [shape=square,width=1.5]; -Genotype -> TraitA_T1; -Genotype -> TraitA_T2; -Genotype -> TraitA_T3; -Genotype -> TraitB_T2; -TraitA_T1 -> TraitB_T2; -TraitA_T1 -> TraitC_T3; -TraitB_T2 -> TraitC_T3; -} \ No newline at end of file diff --git a/sourcecodes/data/example_time_series/TEbk.txt b/sourcecodes/data/example_time_series/TEbk.txt deleted file mode 100644 index 29d6383b..00000000 --- a/sourcecodes/data/example_time_series/TEbk.txt +++ /dev/null @@ -1 +0,0 @@ -100 diff --git a/sourcecodes/data/example_time_series/TEbmap.txt b/sourcecodes/data/example_time_series/TEbmap.txt deleted file mode 100644 index 20f9b470..00000000 --- a/sourcecodes/data/example_time_series/TEbmap.txt +++ /dev/null @@ -1,10 +0,0 @@ -Genotype 0.499053 1.462000 -TraitA_T1 1.306059 0.037189 -TraitA_T2 1.304164 -0.061147 -TraitA_T3 1.174305 -0.083449 -TraitB_T1 0.929161 -0.056347 -TraitB_T2 1.021691 -0.045299 -TraitB_T3 0.940946 0.012204 -TraitC_T1 0.907725 -0.001607 -TraitC_T2 0.923711 0.091657 -TraitC_T3 1.015189 0.017718 diff --git a/sourcecodes/data/example_time_series/TEbmapdata.txt b/sourcecodes/data/example_time_series/TEbmapdata.txt deleted file mode 100644 index 7e9af6ce..00000000 --- a/sourcecodes/data/example_time_series/TEbmapdata.txt +++ /dev/null @@ -1 +0,0 @@ -TraitC_T2 TraitC_T1 TraitB_T3 TraitB_T1 Genotype TraitA_T3 TraitA_T2 TraitA_T1 TraitB_T2 TraitC_T3 diff --git a/sourcecodes/data/example_time_series/TEbname.txt b/sourcecodes/data/example_time_series/TEbname.txt deleted file mode 100644 index 69919d0f..00000000 --- a/sourcecodes/data/example_time_series/TEbname.txt +++ /dev/null @@ -1 +0,0 @@ -Genotype TraitA_T1 TraitA_T2 TraitA_T3 TraitB_T1 TraitB_T2 TraitB_T3 TraitC_T1 TraitC_T2 TraitC_T3 diff --git a/sourcecodes/data/example_time_series/TEbnet_figure.txt b/sourcecodes/data/example_time_series/TEbnet_figure.txt deleted file mode 100644 index 1cceadd2..00000000 --- a/sourcecodes/data/example_time_series/TEbnet_figure.txt +++ /dev/null @@ -1,963 +0,0 @@ -10 -1500 1200 -TraitC_T2 0 0 -TraitC_T1 250 0 -TraitB_T3 500 0 -TraitB_T1 750 0 -Genotype 1000 0 -TraitA_T3 275 240 -TraitA_T2 650 240 -TraitA_T1 1025 240 -TraitB_T2 500 480 -TraitC_T3 650 720 -TraitC_T2 1 -250 150 -0 -0 --3.6677 0.0001 --3.5949 0.0002 --3.5222 0.0002 --3.4494 0.0003 --3.3767 0.0004 --3.3039 0.0005 --3.2311 0.0007 --3.1584 0.0009 --3.0856 0.0012 --3.0129 0.0015 --2.9401 0.0020 --2.8673 0.0025 --2.7946 0.0032 --2.7218 0.0041 --2.6490 0.0052 --2.5763 0.0065 --2.5035 0.0081 --2.4308 0.0101 --2.3580 0.0124 --2.2852 0.0152 --2.2125 0.0185 --2.1397 0.0224 --2.0669 0.0269 --1.9942 0.0322 --1.9214 0.0382 --1.8487 0.0451 --1.7759 0.0529 --1.7031 0.0617 --1.6304 0.0716 --1.5576 0.0824 --1.4848 0.0944 --1.4121 0.1074 --1.3393 0.1215 --1.2666 0.1366 --1.1938 0.1526 --1.1210 0.1695 --1.0483 0.1871 --0.9755 0.2052 --0.9027 0.2238 --0.8300 0.2425 --0.7572 0.2612 --0.6845 0.2796 --0.6117 0.2975 --0.5389 0.3147 --0.4662 0.3308 --0.3934 0.3456 --0.3206 0.3588 --0.2479 0.3703 --0.1751 0.3799 --0.1024 0.3873 --0.0296 0.3924 -0.0432 0.3952 -0.1159 0.3956 -0.1887 0.3936 -0.2614 0.3892 -0.3342 0.3826 -0.4070 0.3737 -0.4797 0.3629 -0.5525 0.3502 -0.6253 0.3358 -0.6980 0.3202 -0.7708 0.3033 -0.8435 0.2857 -0.9163 0.2674 -0.9891 0.2487 -1.0618 0.2300 -1.1346 0.2114 -1.2074 0.1930 -1.2801 0.1753 -1.3529 0.1581 -1.4256 0.1418 -1.4984 0.1264 -1.5712 0.1120 -1.6439 0.0986 -1.7167 0.0863 -1.7895 0.0751 -1.8622 0.0649 -1.9350 0.0558 -2.0077 0.0476 -2.0805 0.0404 -2.1533 0.0341 -2.2260 0.0286 -2.2988 0.0238 -2.3716 0.0197 -2.4443 0.0163 -2.5171 0.0133 -2.5898 0.0108 -2.6626 0.0087 -2.7354 0.0070 -2.8081 0.0056 -2.8809 0.0045 -2.9537 0.0035 -3.0264 0.0028 -3.0992 0.0021 -3.1719 0.0017 -3.2447 0.0013 -3.3175 0.0010 -3.3902 0.0007 -3.4630 0.0006 -3.5357 0.0004 -3.6085 0.0003 -TraitC_T1 1 -250 150 -0 -0 --3.4884 0.0003 --3.4129 0.0004 --3.3374 0.0005 --3.2619 0.0007 --3.1864 0.0009 --3.1109 0.0012 --3.0354 0.0016 --2.9599 0.0021 --2.8844 0.0028 --2.8089 0.0036 --2.7334 0.0046 --2.6579 0.0059 --2.5824 0.0074 --2.5069 0.0093 --2.4314 0.0116 --2.3559 0.0144 --2.2804 0.0178 --2.2049 0.0218 --2.1294 0.0265 --2.0539 0.0320 --1.9784 0.0384 --1.9029 0.0457 --1.8274 0.0540 --1.7519 0.0635 --1.6764 0.0741 --1.6009 0.0859 --1.5254 0.0989 --1.4499 0.1131 --1.3744 0.1284 --1.2989 0.1448 --1.2234 0.1623 --1.1479 0.1806 --1.0724 0.1995 --0.9969 0.2190 --0.9214 0.2388 --0.8459 0.2585 --0.7704 0.2781 --0.6949 0.2970 --0.6194 0.3151 --0.5439 0.3320 --0.4684 0.3475 --0.3929 0.3612 --0.3174 0.3729 --0.2419 0.3824 --0.1664 0.3894 --0.0909 0.3939 --0.0154 0.3957 -0.0601 0.3949 -0.1356 0.3914 -0.2111 0.3852 -0.2866 0.3766 -0.3620 0.3657 -0.4375 0.3527 -0.5130 0.3379 -0.5885 0.3215 -0.6640 0.3038 -0.7395 0.2851 -0.8150 0.2657 -0.8905 0.2460 -0.9660 0.2262 -1.0415 0.2066 -1.1170 0.1874 -1.1925 0.1689 -1.2680 0.1511 -1.3435 0.1343 -1.4190 0.1186 -1.4945 0.1040 -1.5700 0.0905 -1.6455 0.0783 -1.7210 0.0673 -1.7965 0.0574 -1.8720 0.0486 -1.9475 0.0409 -2.0230 0.0342 -2.0985 0.0284 -2.1740 0.0234 -2.2495 0.0192 -2.3250 0.0156 -2.4005 0.0126 -2.4760 0.0101 -2.5515 0.0081 -2.6270 0.0064 -2.7025 0.0050 -2.7780 0.0039 -2.8535 0.0030 -2.9290 0.0023 -3.0045 0.0018 -3.0800 0.0014 -3.1555 0.0010 -3.2310 0.0008 -3.3065 0.0006 -3.3820 0.0004 -3.4575 0.0003 -3.5330 0.0002 -3.6085 0.0002 -3.6840 0.0001 -3.7595 0.0001 -3.8350 0.0001 -3.9105 0.0000 -3.9860 0.0000 -4.0615 0.0000 -TraitB_T3 1 -250 150 -0 -0 --3.6093 0.0003 --3.5383 0.0004 --3.4673 0.0005 --3.3963 0.0006 --3.3252 0.0008 --3.2542 0.0011 --3.1832 0.0014 --3.1122 0.0017 --3.0411 0.0022 --2.9701 0.0028 --2.8991 0.0036 --2.8281 0.0045 --2.7570 0.0056 --2.6860 0.0069 --2.6150 0.0085 --2.5440 0.0105 --2.4729 0.0128 --2.4019 0.0155 --2.3309 0.0187 --2.2599 0.0225 --2.1888 0.0268 --2.1178 0.0318 --2.0468 0.0375 --1.9758 0.0440 --1.9047 0.0513 --1.8337 0.0596 --1.7627 0.0687 --1.6917 0.0788 --1.6206 0.0899 --1.5496 0.1020 --1.4786 0.1151 --1.4076 0.1291 --1.3365 0.1440 --1.2655 0.1597 --1.1945 0.1762 --1.1235 0.1933 --1.0524 0.2108 --0.9814 0.2286 --0.9104 0.2466 --0.8394 0.2645 --0.7683 0.2821 --0.6973 0.2992 --0.6263 0.3155 --0.5553 0.3309 --0.4842 0.3451 --0.4132 0.3579 --0.3422 0.3691 --0.2712 0.3785 --0.2001 0.3860 --0.1291 0.3914 --0.0581 0.3947 -0.0129 0.3958 -0.0839 0.3946 -0.1550 0.3913 -0.2260 0.3858 -0.2970 0.3783 -0.3680 0.3689 -0.4391 0.3577 -0.5101 0.3448 -0.5811 0.3306 -0.6521 0.3152 -0.7232 0.2988 -0.7942 0.2817 -0.8652 0.2641 -0.9362 0.2462 -1.0073 0.2283 -1.0783 0.2104 -1.1493 0.1929 -1.2203 0.1758 -1.2914 0.1594 -1.3624 0.1437 -1.4334 0.1288 -1.5044 0.1148 -1.5755 0.1018 -1.6465 0.0897 -1.7175 0.0786 -1.7885 0.0685 -1.8596 0.0594 -1.9306 0.0512 -2.0016 0.0439 -2.0726 0.0374 -2.1437 0.0317 -2.2147 0.0267 -2.2857 0.0224 -2.3567 0.0186 -2.4278 0.0155 -2.4988 0.0127 -2.5698 0.0104 -2.6408 0.0085 -2.7119 0.0069 -2.7829 0.0056 -2.8539 0.0044 -2.9249 0.0035 -2.9960 0.0028 -3.0670 0.0022 -3.1380 0.0017 -3.2090 0.0014 -3.2801 0.0010 -3.3511 0.0008 -3.4221 0.0006 -3.4931 0.0005 -TraitB_T1 1 -250 150 -0 -0 --3.5085 0.0004 --3.4347 0.0006 --3.3609 0.0008 --3.2872 0.0010 --3.2134 0.0013 --3.1397 0.0018 --3.0659 0.0023 --2.9921 0.0029 --2.9184 0.0037 --2.8446 0.0047 --2.7709 0.0059 --2.6971 0.0074 --2.6234 0.0093 --2.5496 0.0114 --2.4758 0.0141 --2.4021 0.0172 --2.3283 0.0209 --2.2546 0.0252 --2.1808 0.0302 --2.1070 0.0360 --2.0333 0.0427 --1.9595 0.0502 --1.8858 0.0587 --1.8120 0.0683 --1.7382 0.0789 --1.6645 0.0906 --1.5907 0.1034 --1.5170 0.1173 --1.4432 0.1322 --1.3694 0.1481 --1.2957 0.1649 --1.2219 0.1824 --1.1482 0.2006 --1.0744 0.2192 --1.0006 0.2381 --0.9269 0.2570 --0.8531 0.2756 --0.7794 0.2938 --0.7056 0.3112 --0.6319 0.3277 --0.5581 0.3429 --0.4843 0.3565 --0.4106 0.3685 --0.3368 0.3784 --0.2631 0.3863 --0.1893 0.3918 --0.1155 0.3950 --0.0418 0.3957 -0.0320 0.3940 -0.1057 0.3899 -0.1795 0.3834 -0.2533 0.3747 -0.3270 0.3640 -0.4008 0.3513 -0.4745 0.3370 -0.5483 0.3213 -0.6221 0.3045 -0.6958 0.2867 -0.7696 0.2683 -0.8433 0.2495 -0.9171 0.2306 -0.9909 0.2118 -1.0646 0.1934 -1.1384 0.1754 -1.2121 0.1582 -1.2859 0.1417 -1.3596 0.1262 -1.4334 0.1117 -1.5072 0.0982 -1.5809 0.0859 -1.6547 0.0746 -1.7284 0.0644 -1.8022 0.0553 -1.8760 0.0471 -1.9497 0.0399 -2.0235 0.0336 -2.0972 0.0281 -2.1710 0.0234 -2.2448 0.0194 -2.3185 0.0159 -2.3923 0.0130 -2.4660 0.0105 -2.5398 0.0085 -2.6136 0.0068 -2.6873 0.0054 -2.7611 0.0043 -2.8348 0.0034 -2.9086 0.0026 -2.9824 0.0020 -3.0561 0.0016 -3.1299 0.0012 -3.2036 0.0009 -3.2774 0.0007 -3.3511 0.0005 -3.4249 0.0004 -3.4987 0.0003 -3.5724 0.0002 -3.6462 0.0002 -3.7199 0.0001 -3.7937 0.0001 -3.8675 0.0001 -Genotype 2 -250 150 -0 -4 6 7 8 9 -1 0.5380 -2 0.4620 -TraitA_T3 1 -250 150 -1 5 -0 --4.3220 0.0007 --4.2395 0.0008 --4.1570 0.0011 --4.0746 0.0013 --3.9921 0.0017 --3.9096 0.0021 --3.8271 0.0027 --3.7446 0.0033 --3.6621 0.0041 --3.5797 0.0050 --3.4972 0.0062 --3.4147 0.0075 --3.3322 0.0092 --3.2497 0.0111 --3.1673 0.0133 --3.0848 0.0159 --3.0023 0.0189 --2.9198 0.0224 --2.8373 0.0264 --2.7548 0.0310 --2.6724 0.0362 --2.5899 0.0421 --2.5074 0.0486 --2.4249 0.0559 --2.3424 0.0641 --2.2600 0.0730 --2.1775 0.0828 --2.0950 0.0934 --2.0125 0.1049 --1.9300 0.1172 --1.8475 0.1304 --1.7651 0.1443 --1.6826 0.1589 --1.6001 0.1742 --1.5176 0.1900 --1.4351 0.2062 --1.3526 0.2227 --1.2702 0.2394 --1.1877 0.2561 --1.1052 0.2727 --1.0227 0.2889 --0.9402 0.3046 --0.8578 0.3195 --0.7753 0.3336 --0.6928 0.3467 --0.6103 0.3585 --0.5278 0.3688 --0.4453 0.3777 --0.3629 0.3849 --0.2804 0.3903 --0.1979 0.3939 --0.1154 0.3956 --0.0329 0.3954 -0.0495 0.3933 -0.1320 0.3893 -0.2145 0.3834 -0.2970 0.3759 -0.3795 0.3666 -0.4620 0.3559 -0.5444 0.3438 -0.6269 0.3306 -0.7094 0.3162 -0.7919 0.3011 -0.8744 0.2853 -0.9568 0.2690 -1.0393 0.2524 -1.1218 0.2357 -1.2043 0.2190 -1.2868 0.2025 -1.3693 0.1864 -1.4517 0.1707 -1.5342 0.1556 -1.6167 0.1411 -1.6992 0.1273 -1.7817 0.1144 -1.8642 0.1022 -1.9466 0.0909 -2.0291 0.0805 -2.1116 0.0709 -2.1941 0.0622 -2.2766 0.0542 -2.3590 0.0471 -2.4415 0.0407 -2.5240 0.0350 -2.6065 0.0299 -2.6890 0.0255 -2.7715 0.0216 -2.8539 0.0182 -2.9364 0.0153 -3.0189 0.0128 -3.1014 0.0106 -3.1839 0.0088 -3.2663 0.0072 -3.3488 0.0059 -3.4313 0.0048 -3.5138 0.0039 -3.5963 0.0032 -3.6788 0.0025 -3.7612 0.0020 -3.8437 0.0016 -3.9262 0.0013 -TraitA_T2 1 -250 150 -1 5 -0 --4.7209 0.0007 --4.6314 0.0009 --4.5418 0.0012 --4.4523 0.0015 --4.3628 0.0019 --4.2733 0.0023 --4.1838 0.0029 --4.0943 0.0036 --4.0048 0.0044 --3.9153 0.0054 --3.8258 0.0066 --3.7362 0.0079 --3.6467 0.0096 --3.5572 0.0115 --3.4677 0.0138 --3.3782 0.0164 --3.2887 0.0194 --3.1992 0.0229 --3.1097 0.0269 --3.0201 0.0314 --2.9306 0.0365 --2.8411 0.0423 --2.7516 0.0487 --2.6621 0.0559 --2.5726 0.0638 --2.4831 0.0725 --2.3936 0.0820 --2.3041 0.0923 --2.2145 0.1035 --2.1250 0.1154 --2.0355 0.1281 --1.9460 0.1416 --1.8565 0.1558 --1.7670 0.1705 --1.6775 0.1859 --1.5880 0.2016 --1.4985 0.2177 --1.4089 0.2340 --1.3194 0.2503 --1.2299 0.2666 --1.1404 0.2825 --1.0509 0.2981 --0.9614 0.3131 --0.8719 0.3272 --0.7824 0.3405 --0.6929 0.3526 --0.6033 0.3635 --0.5138 0.3730 --0.4243 0.3810 --0.3348 0.3873 --0.2453 0.3919 --0.1558 0.3948 --0.0663 0.3958 -0.0232 0.3950 -0.1127 0.3923 -0.2023 0.3879 -0.2918 0.3818 -0.3813 0.3740 -0.4708 0.3647 -0.5603 0.3539 -0.6498 0.3419 -0.7393 0.3288 -0.8288 0.3147 -0.9183 0.2998 -1.0079 0.2844 -1.0974 0.2684 -1.1869 0.2522 -1.2764 0.2359 -1.3659 0.2196 -1.4554 0.2034 -1.5449 0.1876 -1.6344 0.1723 -1.7239 0.1574 -1.8135 0.1432 -1.9030 0.1296 -1.9925 0.1168 -2.0820 0.1048 -2.1715 0.0936 -2.2610 0.0832 -2.3505 0.0736 -2.4400 0.0648 -2.5295 0.0568 -2.6191 0.0495 -2.7086 0.0430 -2.7981 0.0372 -2.8876 0.0320 -2.9771 0.0274 -3.0666 0.0233 -3.1561 0.0198 -3.2456 0.0167 -3.3352 0.0141 -3.4247 0.0118 -3.5142 0.0098 -3.6037 0.0081 -3.6932 0.0067 -3.7827 0.0055 -3.8722 0.0045 -3.9617 0.0037 -4.0512 0.0030 -4.1408 0.0024 -4.2303 0.0019 -TraitA_T1 1 -250 150 -1 5 -2 9 10 --5.7657 0.0000 --5.6659 0.0000 --5.5661 0.0000 --5.4664 0.0001 --5.3666 0.0001 --5.2669 0.0001 --5.1671 0.0002 --5.0673 0.0002 --4.9676 0.0003 --4.8678 0.0004 --4.7681 0.0005 --4.6683 0.0007 --4.5685 0.0009 --4.4688 0.0011 --4.3690 0.0015 --4.2693 0.0019 --4.1695 0.0024 --4.0697 0.0030 --3.9700 0.0039 --3.8702 0.0048 --3.7705 0.0060 --3.6707 0.0075 --3.5709 0.0093 --3.4712 0.0114 --3.3714 0.0139 --3.2717 0.0168 --3.1719 0.0203 --3.0721 0.0243 --2.9724 0.0290 --2.8726 0.0344 --2.7729 0.0406 --2.6731 0.0475 --2.5733 0.0554 --2.4736 0.0642 --2.3738 0.0740 --2.2741 0.0848 --2.1743 0.0965 --2.0745 0.1093 --1.9748 0.1231 --1.8750 0.1378 --1.7753 0.1534 --1.6755 0.1698 --1.5757 0.1869 --1.4760 0.2044 --1.3762 0.2224 --1.2765 0.2406 --1.1767 0.2587 --1.0769 0.2767 --0.9772 0.2941 --0.8774 0.3109 --0.7776 0.3268 --0.6779 0.3415 --0.5781 0.3548 --0.4784 0.3666 --0.3786 0.3765 --0.2788 0.3845 --0.1791 0.3905 --0.0793 0.3942 -0.0204 0.3957 -0.1202 0.3950 -0.2200 0.3920 -0.3197 0.3868 -0.4195 0.3794 -0.5192 0.3701 -0.6190 0.3590 -0.7188 0.3461 -0.8185 0.3319 -0.9183 0.3164 -1.0180 0.2999 -1.1178 0.2826 -1.2176 0.2648 -1.3173 0.2467 -1.4171 0.2285 -1.5168 0.2105 -1.6166 0.1927 -1.7164 0.1755 -1.8161 0.1588 -1.9159 0.1430 -2.0156 0.1280 -2.1154 0.1139 -2.2152 0.1007 -2.3149 0.0886 -2.4147 0.0775 -2.5144 0.0674 -2.6142 0.0583 -2.7140 0.0501 -2.8137 0.0428 -2.9135 0.0364 -3.0132 0.0307 -3.1130 0.0258 -3.2128 0.0216 -3.3125 0.0179 -3.4123 0.0148 -3.5120 0.0122 -3.6118 0.0099 -3.7116 0.0081 -3.8113 0.0065 -3.9111 0.0052 -4.0108 0.0042 -4.1106 0.0033 -4.2104 0.0026 -TraitB_T2 1 -250 150 -2 5 8 -1 10 --3.7882 0.0006 --3.7109 0.0008 --3.6337 0.0010 --3.5564 0.0013 --3.4791 0.0017 --3.4019 0.0021 --3.3246 0.0027 --3.2473 0.0034 --3.1700 0.0043 --3.0928 0.0053 --3.0155 0.0066 --2.9382 0.0081 --2.8610 0.0100 --2.7837 0.0122 --2.7064 0.0148 --2.6292 0.0178 --2.5519 0.0214 --2.4746 0.0255 --2.3974 0.0302 --2.3201 0.0357 --2.2428 0.0419 --2.1656 0.0489 --2.0883 0.0568 --2.0110 0.0655 --1.9338 0.0752 --1.8565 0.0858 --1.7792 0.0975 --1.7020 0.1100 --1.6247 0.1235 --1.5474 0.1379 --1.4702 0.1532 --1.3929 0.1692 --1.3156 0.1858 --1.2384 0.2029 --1.1611 0.2204 --1.0838 0.2381 --1.0065 0.2557 --0.9293 0.2732 --0.8520 0.2902 --0.7747 0.3066 --0.6975 0.3222 --0.6202 0.3366 --0.5429 0.3498 --0.4657 0.3615 --0.3884 0.3715 --0.3111 0.3797 --0.2339 0.3859 --0.1566 0.3901 --0.0793 0.3921 --0.0021 0.3920 -0.0752 0.3897 -0.1525 0.3853 -0.2297 0.3788 -0.3070 0.3704 -0.3843 0.3602 -0.4615 0.3483 -0.5388 0.3350 -0.6161 0.3204 -0.6933 0.3047 -0.7706 0.2882 -0.8479 0.2711 -0.9251 0.2536 -1.0024 0.2359 -1.0797 0.2183 -1.1569 0.2008 -1.2342 0.1838 -1.3115 0.1672 -1.3888 0.1513 -1.4660 0.1362 -1.5433 0.1219 -1.6206 0.1085 -1.6978 0.0960 -1.7751 0.0845 -1.8524 0.0740 -1.9296 0.0644 -2.0069 0.0558 -2.0842 0.0480 -2.1614 0.0411 -2.2387 0.0350 -2.3160 0.0296 -2.3932 0.0250 -2.4705 0.0209 -2.5478 0.0174 -2.6250 0.0144 -2.7023 0.0119 -2.7796 0.0097 -2.8568 0.0079 -2.9341 0.0064 -3.0114 0.0052 -3.0886 0.0041 -3.1659 0.0033 -3.2432 0.0026 -3.3204 0.0021 -3.3977 0.0016 -3.4750 0.0013 -3.5523 0.0010 -3.6295 0.0008 -3.7068 0.0006 -3.7841 0.0004 -3.8613 0.0003 -3.9386 0.0003 -TraitC_T3 1 -250 150 -2 8 9 -0 --4.7490 0.0000 --4.6626 0.0000 --4.5763 0.0000 --4.4899 0.0000 --4.4036 0.0000 --4.3172 0.0001 --4.2309 0.0001 --4.1445 0.0001 --4.0582 0.0002 --3.9718 0.0002 --3.8855 0.0003 --3.7991 0.0005 --3.7127 0.0006 --3.6264 0.0008 --3.5400 0.0011 --3.4537 0.0015 --3.3673 0.0019 --3.2810 0.0025 --3.1946 0.0033 --3.1083 0.0042 --3.0219 0.0054 --2.9356 0.0069 --2.8492 0.0087 --2.7629 0.0109 --2.6765 0.0135 --2.5901 0.0167 --2.5038 0.0205 --2.4174 0.0250 --2.3311 0.0303 --2.2447 0.0364 --2.1584 0.0435 --2.0720 0.0516 --1.9857 0.0608 --1.8993 0.0711 --1.8130 0.0826 --1.7266 0.0953 --1.6403 0.1091 --1.5539 0.1242 --1.4675 0.1403 --1.3812 0.1575 --1.2948 0.1755 --1.2085 0.1943 --1.1221 0.2136 --1.0358 0.2331 --0.9494 0.2527 --0.8631 0.2721 --0.7767 0.2910 --0.6904 0.3090 --0.6040 0.3259 --0.5177 0.3413 --0.4313 0.3550 --0.3449 0.3667 --0.2586 0.3762 --0.1722 0.3833 --0.0859 0.3878 -0.0005 0.3897 -0.0868 0.3889 -0.1732 0.3854 -0.2595 0.3793 -0.3459 0.3708 -0.4322 0.3599 -0.5186 0.3470 -0.6049 0.3322 -0.6913 0.3159 -0.7777 0.2983 -0.8640 0.2797 -0.9504 0.2605 -1.0367 0.2410 -1.1231 0.2214 -1.2094 0.2019 -1.2958 0.1829 -1.3821 0.1646 -1.4685 0.1471 -1.5548 0.1305 -1.6412 0.1150 -1.7275 0.1007 -1.8139 0.0875 -1.9003 0.0755 -1.9866 0.0648 -2.0730 0.0551 -2.1593 0.0466 -2.2457 0.0391 -2.3320 0.0326 -2.4184 0.0270 -2.5047 0.0222 -2.5911 0.0182 -2.6774 0.0147 -2.7638 0.0119 -2.8501 0.0095 -2.9365 0.0075 -3.0229 0.0060 -3.1092 0.0047 -3.1956 0.0036 -3.2819 0.0028 -3.3683 0.0022 -3.4546 0.0016 -3.5410 0.0012 -3.6273 0.0009 -3.7137 0.0007 -3.8000 0.0005 -3.8864 0.0004 diff --git a/sourcecodes/data/example_time_series/TEbnet_figure_new.txt b/sourcecodes/data/example_time_series/TEbnet_figure_new.txt deleted file mode 100644 index 4dd4fcc9..00000000 --- a/sourcecodes/data/example_time_series/TEbnet_figure_new.txt +++ /dev/null @@ -1,864 +0,0 @@ -8 -10 -1500 1200 -TraitC_T2 0 0 -TraitC_T1 250 0 -TraitB_T3 500 0 -TraitB_T1 750 0 -Genotype 1000 0 -TraitA_T3 275 240 -TraitA_T2 650 240 -TraitA_T1 1025 240 -TraitB_T2 500 480 -TraitC_T3 650 720 -TraitC_T2 1 -250 150 -0 -0 --4.0699 0.0001 --3.9911 0.0002 --3.9123 0.0002 --3.8335 0.0003 --3.7548 0.0004 --3.6760 0.0005 --3.5972 0.0007 --3.5185 0.0009 --3.4397 0.0012 --3.3609 0.0015 --3.2821 0.0020 --3.2034 0.0025 --3.1246 0.0032 --3.0458 0.0041 --2.9670 0.0052 --2.8883 0.0065 --2.8095 0.0081 --2.7307 0.0101 --2.6520 0.0124 --2.5732 0.0152 --2.4944 0.0185 --2.4156 0.0224 --2.3369 0.0269 --2.2581 0.0322 --2.1793 0.0382 --2.1006 0.0451 --2.0218 0.0529 --1.9430 0.0617 --1.8642 0.0716 --1.7855 0.0824 --1.7067 0.0944 --1.6279 0.1074 --1.5492 0.1215 --1.4704 0.1366 --1.3916 0.1526 --1.3128 0.1695 --1.2341 0.1871 --1.1553 0.2052 --1.0765 0.2238 --0.9978 0.2425 --0.9190 0.2612 --0.8402 0.2796 --0.7614 0.2975 --0.6827 0.3147 --0.6039 0.3308 --0.5251 0.3456 --0.4464 0.3588 --0.3676 0.3703 --0.2888 0.3799 --0.2100 0.3873 --0.1313 0.3924 --0.0525 0.3952 -0.0263 0.3956 -0.1050 0.3936 -0.1838 0.3892 -0.2626 0.3826 -0.3414 0.3737 -0.4201 0.3629 -0.4989 0.3502 -0.5777 0.3358 -0.6564 0.3202 -0.7352 0.3033 -0.8140 0.2857 -0.8928 0.2674 -0.9715 0.2487 -1.0503 0.2300 -1.1291 0.2114 -1.2078 0.1930 -1.2866 0.1753 -1.3654 0.1581 -1.4442 0.1418 -1.5229 0.1264 -1.6017 0.1120 -1.6805 0.0986 -1.7592 0.0863 -1.8380 0.0751 -1.9168 0.0649 -1.9956 0.0558 -2.0743 0.0476 -2.1531 0.0404 -2.2319 0.0341 -2.3106 0.0286 -2.3894 0.0238 -2.4682 0.0197 -2.5470 0.0163 -2.6257 0.0133 -2.7045 0.0108 -2.7833 0.0087 -2.8620 0.0070 -2.9408 0.0056 -3.0196 0.0045 -3.0984 0.0035 -3.1771 0.0028 -3.2559 0.0021 -3.3347 0.0017 -3.4134 0.0013 -3.4922 0.0010 -3.5710 0.0007 -3.6498 0.0006 -3.7285 0.0004 -3.8073 0.0003 -TraitC_T1 1 -250 150 -0 -0 --3.8413 0.0003 --3.7581 0.0004 --3.6749 0.0005 --3.5917 0.0007 --3.5086 0.0009 --3.4254 0.0012 --3.3422 0.0016 --3.2591 0.0021 --3.1759 0.0028 --3.0927 0.0036 --3.0095 0.0046 --2.9264 0.0059 --2.8432 0.0074 --2.7600 0.0093 --2.6768 0.0116 --2.5937 0.0144 --2.5105 0.0178 --2.4273 0.0218 --2.3441 0.0265 --2.2610 0.0320 --2.1778 0.0384 --2.0946 0.0457 --2.0114 0.0540 --1.9283 0.0635 --1.8451 0.0741 --1.7619 0.0859 --1.6787 0.0989 --1.5956 0.1131 --1.5124 0.1284 --1.4292 0.1448 --1.3460 0.1623 --1.2629 0.1806 --1.1797 0.1995 --1.0965 0.2190 --1.0133 0.2388 --0.9302 0.2585 --0.8470 0.2781 --0.7638 0.2970 --0.6806 0.3151 --0.5975 0.3320 --0.5143 0.3475 --0.4311 0.3612 --0.3479 0.3729 --0.2648 0.3824 --0.1816 0.3894 --0.0984 0.3939 --0.0152 0.3957 -0.0679 0.3949 -0.1511 0.3914 -0.2343 0.3852 -0.3174 0.3766 -0.4006 0.3657 -0.4838 0.3527 -0.5670 0.3379 -0.6501 0.3215 -0.7333 0.3038 -0.8165 0.2851 -0.8997 0.2657 -0.9828 0.2460 -1.0660 0.2262 -1.1492 0.2066 -1.2324 0.1874 -1.3155 0.1689 -1.3987 0.1511 -1.4819 0.1343 -1.5651 0.1186 -1.6482 0.1040 -1.7314 0.0905 -1.8146 0.0783 -1.8978 0.0673 -1.9809 0.0574 -2.0641 0.0486 -2.1473 0.0409 -2.2305 0.0342 -2.3136 0.0284 -2.3968 0.0234 -2.4800 0.0192 -2.5632 0.0156 -2.6463 0.0126 -2.7295 0.0101 -2.8127 0.0081 -2.8959 0.0064 -2.9790 0.0050 -3.0622 0.0039 -3.1454 0.0030 -3.2286 0.0023 -3.3117 0.0018 -3.3949 0.0014 -3.4781 0.0010 -3.5613 0.0008 -3.6444 0.0006 -3.7276 0.0004 -3.8108 0.0003 -3.8940 0.0002 -3.9771 0.0002 -4.0603 0.0001 -4.1435 0.0001 -4.2266 0.0001 -4.3098 0.0000 -4.3930 0.0000 -4.4762 0.0000 -TraitB_T3 1 -250 150 -0 -0 --3.8488 0.0003 --3.7734 0.0004 --3.6979 0.0005 --3.6224 0.0006 --3.5469 0.0008 --3.4714 0.0011 --3.3959 0.0014 --3.3205 0.0017 --3.2450 0.0022 --3.1695 0.0028 --3.0940 0.0036 --3.0185 0.0045 --2.9430 0.0056 --2.8676 0.0069 --2.7921 0.0085 --2.7166 0.0105 --2.6411 0.0128 --2.5656 0.0155 --2.4902 0.0187 --2.4147 0.0225 --2.3392 0.0268 --2.2637 0.0318 --2.1882 0.0375 --2.1127 0.0440 --2.0373 0.0513 --1.9618 0.0596 --1.8863 0.0687 --1.8108 0.0788 --1.7353 0.0899 --1.6598 0.1020 --1.5844 0.1151 --1.5089 0.1291 --1.4334 0.1440 --1.3579 0.1597 --1.2824 0.1762 --1.2070 0.1933 --1.1315 0.2108 --1.0560 0.2286 --0.9805 0.2466 --0.9050 0.2645 --0.8295 0.2821 --0.7541 0.2992 --0.6786 0.3155 --0.6031 0.3309 --0.5276 0.3451 --0.4521 0.3579 --0.3766 0.3691 --0.3012 0.3785 --0.2257 0.3860 --0.1502 0.3914 --0.0747 0.3947 -0.0008 0.3958 -0.0762 0.3946 -0.1517 0.3913 -0.2272 0.3858 -0.3027 0.3783 -0.3782 0.3689 -0.4537 0.3577 -0.5291 0.3448 -0.6046 0.3306 -0.6801 0.3152 -0.7556 0.2988 -0.8311 0.2817 -0.9066 0.2641 -0.9820 0.2462 -1.0575 0.2283 -1.1330 0.2104 -1.2085 0.1929 -1.2840 0.1758 -1.3595 0.1594 -1.4349 0.1437 -1.5104 0.1288 -1.5859 0.1148 -1.6614 0.1018 -1.7369 0.0897 -1.8123 0.0786 -1.8878 0.0685 -1.9633 0.0594 -2.0388 0.0512 -2.1143 0.0439 -2.1898 0.0374 -2.2652 0.0317 -2.3407 0.0267 -2.4162 0.0224 -2.4917 0.0186 -2.5672 0.0155 -2.6427 0.0127 -2.7181 0.0104 -2.7936 0.0085 -2.8691 0.0069 -2.9446 0.0056 -3.0201 0.0044 -3.0955 0.0035 -3.1710 0.0028 -3.2465 0.0022 -3.3220 0.0017 -3.3975 0.0014 -3.4730 0.0010 -3.5484 0.0008 -3.6239 0.0006 -3.6994 0.0005 -TraitB_T1 1 -250 150 -0 -0 --3.7153 0.0004 --3.6359 0.0006 --3.5565 0.0008 --3.4772 0.0010 --3.3978 0.0013 --3.3184 0.0018 --3.2390 0.0023 --3.1596 0.0029 --3.0802 0.0037 --3.0009 0.0047 --2.9215 0.0059 --2.8421 0.0074 --2.7627 0.0093 --2.6833 0.0114 --2.6039 0.0141 --2.5246 0.0172 --2.4452 0.0209 --2.3658 0.0252 --2.2864 0.0302 --2.2070 0.0360 --2.1277 0.0427 --2.0483 0.0502 --1.9689 0.0587 --1.8895 0.0683 --1.8101 0.0789 --1.7307 0.0906 --1.6514 0.1034 --1.5720 0.1173 --1.4926 0.1322 --1.4132 0.1481 --1.3338 0.1649 --1.2544 0.1824 --1.1751 0.2006 --1.0957 0.2192 --1.0163 0.2381 --0.9369 0.2570 --0.8575 0.2756 --0.7781 0.2938 --0.6988 0.3112 --0.6194 0.3277 --0.5400 0.3429 --0.4606 0.3565 --0.3812 0.3685 --0.3019 0.3784 --0.2225 0.3863 --0.1431 0.3918 --0.0637 0.3950 -0.0157 0.3957 -0.0951 0.3940 -0.1744 0.3899 -0.2538 0.3834 -0.3332 0.3747 -0.4126 0.3640 -0.4920 0.3513 -0.5714 0.3370 -0.6507 0.3213 -0.7301 0.3045 -0.8095 0.2867 -0.8889 0.2683 -0.9683 0.2495 -1.0477 0.2306 -1.1270 0.2118 -1.2064 0.1934 -1.2858 0.1754 -1.3652 0.1582 -1.4446 0.1417 -1.5239 0.1262 -1.6033 0.1117 -1.6827 0.0982 -1.7621 0.0859 -1.8415 0.0746 -1.9209 0.0644 -2.0002 0.0553 -2.0796 0.0471 -2.1590 0.0399 -2.2384 0.0336 -2.3178 0.0281 -2.3972 0.0234 -2.4765 0.0194 -2.5559 0.0159 -2.6353 0.0130 -2.7147 0.0105 -2.7941 0.0085 -2.8735 0.0068 -2.9528 0.0054 -3.0322 0.0043 -3.1116 0.0034 -3.1910 0.0026 -3.2704 0.0020 -3.3497 0.0016 -3.4291 0.0012 -3.5085 0.0009 -3.5879 0.0007 -3.6673 0.0005 -3.7467 0.0004 -3.8260 0.0003 -3.9054 0.0002 -3.9848 0.0002 -4.0642 0.0001 -4.1436 0.0001 -4.2230 0.0001 -Genotype 2 -250 150 -0 -4 6 7 8 9 -1 0.9800 -2 0.0200 -TraitA_T3 1 -250 150 -1 5 -0 --3.6094 0.0000 --3.5392 0.0000 --3.4689 0.0000 --3.3987 0.0000 --3.3285 0.0000 --3.2582 0.0000 --3.1880 0.0000 --3.1177 0.0000 --3.0475 0.0001 --2.9773 0.0001 --2.9070 0.0002 --2.8368 0.0003 --2.7665 0.0004 --2.6963 0.0007 --2.6261 0.0012 --2.5558 0.0019 --2.4856 0.0029 --2.4154 0.0044 --2.3451 0.0067 --2.2749 0.0100 --2.2046 0.0145 --2.1344 0.0208 --2.0642 0.0293 --1.9939 0.0405 --1.9237 0.0552 --1.8534 0.0738 --1.7832 0.0970 --1.7130 0.1254 --1.6427 0.1592 --1.5725 0.1988 --1.5022 0.2440 --1.4320 0.2943 --1.3618 0.3489 --1.2915 0.4067 --1.2213 0.4658 --1.1510 0.5245 --1.0808 0.5805 --1.0106 0.6315 --0.9403 0.6752 --0.8701 0.7097 --0.7999 0.7331 --0.7296 0.7444 --0.6594 0.7430 --0.5891 0.7289 --0.5189 0.7029 --0.4487 0.6662 --0.3784 0.6206 --0.3082 0.5683 --0.2379 0.5116 --0.1677 0.4526 --0.0975 0.3936 --0.0272 0.3364 -0.0430 0.2827 -0.1133 0.2334 -0.1835 0.1895 -0.2537 0.1512 -0.3240 0.1186 -0.3942 0.0914 -0.4645 0.0692 -0.5347 0.0516 -0.6049 0.0378 -0.6752 0.0272 -0.7454 0.0192 -0.8156 0.0134 -0.8859 0.0091 -0.9561 0.0061 -1.0264 0.0040 -1.0966 0.0026 -1.1668 0.0017 -1.2371 0.0010 -1.3073 0.0006 -1.3776 0.0004 -1.4478 0.0002 -1.5180 0.0001 -1.5883 0.0001 -1.6585 0.0000 -1.7288 0.0000 -1.7990 0.0000 -1.8692 0.0000 -1.9395 0.0000 -2.0097 0.0000 -2.0799 0.0000 -2.1502 0.0000 -2.2204 0.0000 -2.2907 0.0000 -2.3609 0.0000 -2.4311 0.0000 -2.5014 0.0000 -2.5716 0.0000 -2.6419 0.0000 -2.7121 0.0000 -2.7823 0.0000 -2.8526 0.0000 -2.9228 0.0000 -2.9931 0.0000 -3.0633 0.0000 -3.1335 0.0000 -3.2038 0.0000 -3.2740 0.0000 -3.3443 0.0000 -3.4145 0.0000 -TraitA_T2 1 -250 150 -1 5 -0 --3.5730 0.0000 --3.5043 0.0000 --3.4357 0.0000 --3.3670 0.0000 --3.2984 0.0000 --3.2298 0.0000 --3.1611 0.0000 --3.0925 0.0000 --3.0239 0.0000 --2.9552 0.0000 --2.8866 0.0001 --2.8180 0.0001 --2.7493 0.0002 --2.6807 0.0003 --2.6121 0.0005 --2.5434 0.0009 --2.4748 0.0015 --2.4062 0.0024 --2.3375 0.0037 --2.2689 0.0058 --2.2003 0.0087 --2.1316 0.0130 --2.0630 0.0190 --1.9943 0.0273 --1.9257 0.0384 --1.8571 0.0532 --1.7884 0.0722 --1.7198 0.0963 --1.6512 0.1260 --1.5825 0.1620 --1.5139 0.2043 --1.4453 0.2531 --1.3766 0.3078 --1.3080 0.3674 --1.2394 0.4305 --1.1707 0.4954 --1.1021 0.5595 --1.0335 0.6205 --0.9648 0.6755 --0.8962 0.7219 --0.8276 0.7575 --0.7589 0.7803 --0.6903 0.7891 --0.6216 0.7834 --0.5530 0.7635 --0.4844 0.7306 --0.4157 0.6863 --0.3471 0.6330 --0.2785 0.5731 --0.2098 0.5094 --0.1412 0.4445 --0.0726 0.3808 --0.0039 0.3203 -0.0647 0.2644 -0.1333 0.2144 -0.2020 0.1706 -0.2706 0.1333 -0.3392 0.1022 -0.4079 0.0770 -0.4765 0.0569 -0.5451 0.0413 -0.6138 0.0294 -0.6824 0.0206 -0.7511 0.0141 -0.8197 0.0095 -0.8883 0.0063 -0.9570 0.0041 -1.0256 0.0026 -1.0942 0.0016 -1.1629 0.0010 -1.2315 0.0006 -1.3001 0.0004 -1.3688 0.0002 -1.4374 0.0001 -1.5060 0.0001 -1.5747 0.0000 -1.6433 0.0000 -1.7119 0.0000 -1.7806 0.0000 -1.8492 0.0000 -1.9178 0.0000 -1.9865 0.0000 -2.0551 0.0000 -2.1238 0.0000 -2.1924 0.0000 -2.2610 0.0000 -2.3297 0.0000 -2.3983 0.0000 -2.4669 0.0000 -2.5356 0.0000 -2.6042 0.0000 -2.6728 0.0000 -2.7415 0.0000 -2.8101 0.0000 -2.8787 0.0000 -2.9474 0.0000 -3.0160 0.0000 -3.0846 0.0000 -3.1533 0.0000 -3.2219 0.0000 -3.2905 0.0000 -TraitA_T1 1 -250 150 -1 5 -2 9 10 -1.5029 1.0000 -TraitB_T2 1 -250 150 -2 5 8 -1 10 --3.6634 0.0000 --3.5878 0.0000 --3.5122 0.0000 --3.4365 0.0000 --3.3609 0.0000 --3.2853 0.0000 --3.2097 0.0000 --3.1340 0.0000 --3.0584 0.0000 --2.9828 0.0000 --2.9072 0.0000 --2.8315 0.0000 --2.7559 0.0000 --2.6803 0.0000 --2.6046 0.0000 --2.5290 0.0000 --2.4534 0.0000 --2.3778 0.0000 --2.3021 0.0001 --2.2265 0.0001 --2.1509 0.0002 --2.0753 0.0003 --1.9996 0.0005 --1.9240 0.0007 --1.8484 0.0011 --1.7727 0.0016 --1.6971 0.0024 --1.6215 0.0035 --1.5459 0.0050 --1.4702 0.0071 --1.3946 0.0099 --1.3190 0.0136 --1.2434 0.0185 --1.1677 0.0249 --1.0921 0.0330 --1.0165 0.0432 --0.9408 0.0558 --0.8652 0.0712 --0.7896 0.0896 --0.7140 0.1112 --0.6383 0.1364 --0.5627 0.1650 --0.4871 0.1971 --0.4115 0.2323 --0.3358 0.2702 --0.2602 0.3103 --0.1846 0.3517 --0.1089 0.3935 --0.0333 0.4345 -0.0423 0.4735 -0.1179 0.5094 -0.1936 0.5408 -0.2692 0.5667 -0.3448 0.5862 -0.4205 0.5985 -0.4961 0.6030 -0.5717 0.5998 -0.6473 0.5888 -0.7230 0.5704 -0.7986 0.5455 -0.8742 0.5149 -0.9498 0.4797 -1.0255 0.4411 -1.1011 0.4004 -1.1767 0.3587 -1.2524 0.3171 -1.3280 0.2768 -1.4036 0.2384 -1.4792 0.2027 -1.5549 0.1701 -1.6305 0.1409 -1.7061 0.1152 -1.7817 0.0929 -1.8574 0.0740 -1.9330 0.0582 -2.0086 0.0451 -2.0843 0.0346 -2.1599 0.0261 -2.2355 0.0195 -2.3111 0.0144 -2.3868 0.0104 -2.4624 0.0075 -2.5380 0.0053 -2.6136 0.0037 -2.6893 0.0026 -2.7649 0.0017 -2.8405 0.0012 -2.9162 0.0008 -2.9918 0.0005 -3.0674 0.0003 -3.1430 0.0002 -3.2187 0.0001 -3.2943 0.0001 -3.3699 0.0001 -3.4455 0.0000 -3.5212 0.0000 -3.5968 0.0000 -3.6724 0.0000 -3.7481 0.0000 -3.8237 0.0000 -3.8993 0.0000 -TraitC_T3 1 -250 150 -2 8 9 -0 --4.6954 0.0000 --4.6103 0.0000 --4.5253 0.0000 --4.4402 0.0000 --4.3551 0.0000 --4.2701 0.0000 --4.1850 0.0000 --4.1000 0.0000 --4.0149 0.0000 --3.9298 0.0000 --3.8448 0.0000 --3.7597 0.0000 --3.6746 0.0000 --3.5896 0.0000 --3.5045 0.0000 --3.4195 0.0000 --3.3344 0.0000 --3.2493 0.0000 --3.1643 0.0000 --3.0792 0.0000 --2.9942 0.0000 --2.9091 0.0000 --2.8240 0.0000 --2.7390 0.0000 --2.6539 0.0000 --2.5688 0.0000 --2.4838 0.0000 --2.3987 0.0000 --2.3137 0.0000 --2.2286 0.0000 --2.1435 0.0000 --2.0585 0.0000 --1.9734 0.0000 --1.8884 0.0000 --1.8033 0.0000 --1.7182 0.0000 --1.6332 0.0000 --1.5481 0.0000 --1.4630 0.0000 --1.3780 0.0000 --1.2929 0.0000 --1.2079 0.0000 --1.1228 0.0000 --1.0377 0.0000 --0.9527 0.0000 --0.8676 0.0000 --0.7825 0.0001 --0.6975 0.0001 --0.6124 0.0003 --0.5274 0.0006 --0.4423 0.0013 --0.3572 0.0026 --0.2722 0.0049 --0.1871 0.0090 --0.1021 0.0158 --0.0170 0.0268 -0.0681 0.0438 -0.1531 0.0690 -0.2382 0.1047 -0.3233 0.1533 -0.4083 0.2161 -0.4934 0.2937 -0.5784 0.3846 -0.6635 0.4853 -0.7486 0.5902 -0.8336 0.6917 -0.9187 0.7812 -1.0038 0.8502 -1.0888 0.8917 -1.1739 0.9013 -1.2589 0.8779 -1.3440 0.8241 -1.4291 0.7455 -1.5141 0.6498 -1.5992 0.5459 -1.6842 0.4419 -1.7693 0.3448 -1.8544 0.2592 -1.9394 0.1878 -2.0245 0.1311 -2.1096 0.0882 -2.1946 0.0572 -2.2797 0.0358 -2.3647 0.0215 -2.4498 0.0125 -2.5349 0.0070 -2.6199 0.0038 -2.7050 0.0020 -2.7900 0.0010 -2.8751 0.0005 -2.9602 0.0002 -3.0452 0.0001 -3.1303 0.0000 -3.2154 0.0000 -3.3004 0.0000 -3.3855 0.0000 -3.4705 0.0000 -3.5556 0.0000 -3.6407 0.0000 -3.7257 0.0000 -3.8108 0.0000 diff --git a/sourcecodes/data/example_time_series/TEbnlevels.txt b/sourcecodes/data/example_time_series/TEbnlevels.txt deleted file mode 100644 index 714e56bd..00000000 --- a/sourcecodes/data/example_time_series/TEbnlevels.txt +++ /dev/null @@ -1,2 +0,0 @@ -Genotype 1 2 - diff --git a/sourcecodes/data/example_time_series/TEbnnode.txt b/sourcecodes/data/example_time_series/TEbnnode.txt deleted file mode 100644 index f599e28b..00000000 --- a/sourcecodes/data/example_time_series/TEbnnode.txt +++ /dev/null @@ -1 +0,0 @@ -10 diff --git a/sourcecodes/data/example_time_series/TEbnrows.txt b/sourcecodes/data/example_time_series/TEbnrows.txt deleted file mode 100644 index c15fb720..00000000 --- a/sourcecodes/data/example_time_series/TEbnrows.txt +++ /dev/null @@ -1 +0,0 @@ -501 diff --git a/sourcecodes/data/example_time_series/TEbparameters.txt b/sourcecodes/data/example_time_series/TEbparameters.txt deleted file mode 100644 index 14ddb1ac..00000000 --- a/sourcecodes/data/example_time_series/TEbparameters.txt +++ /dev/null @@ -1,41 +0,0 @@ -Genotype -Discrete node with 2 states -1 0.5380 -2 0.4620 - -TraitA_T1 -Continuous node -0.0372 1.3165 - -TraitA_T2 -Continuous node --0.0611 1.3146 - -TraitA_T3 -Continuous node --0.0834 1.1837 - -TraitB_T1 -Continuous node --0.0563 0.9366 - -TraitB_T2 -Continuous node --0.0453 1.0389 - -TraitB_T3 -Continuous node -0.0122 0.9485 - -TraitC_T1 -Continuous node --0.0016 0.9150 - -TraitC_T2 -Continuous node -0.0917 0.9311 - -TraitC_T3 -Continuous node -0.0177 1.0392 - diff --git a/sourcecodes/data/example_time_series/TEbparent.txt b/sourcecodes/data/example_time_series/TEbparent.txt deleted file mode 100644 index b8626c4c..00000000 --- a/sourcecodes/data/example_time_series/TEbparent.txt +++ /dev/null @@ -1 +0,0 @@ -4 diff --git a/sourcecodes/data/example_time_series/TEbstructure_old.txt b/sourcecodes/data/example_time_series/TEbstructure_old.txt deleted file mode 100644 index 2d164e66..00000000 --- a/sourcecodes/data/example_time_series/TEbstructure_old.txt +++ /dev/null @@ -1,6 +0,0 @@ -Genotype 0.5380 0.4620 -TraitA_T1 0.0000 0.0000 0.0000 0.0001 0.0001 0.0001 0.0002 0.0002 0.0003 0.0004 0.0005 0.0007 0.0009 0.0011 0.0015 0.0019 0.0024 0.0030 0.0039 0.0048 0.0060 0.0075 0.0093 0.0114 0.0139 0.0168 0.0203 0.0243 0.0290 0.0344 0.0406 0.0475 0.0554 0.0642 0.0740 0.0848 0.0965 0.1093 0.1231 0.1378 0.1534 0.1698 0.1869 0.2044 0.2224 0.2406 0.2587 0.2767 0.2941 0.3109 0.3268 0.3415 0.3548 0.3666 0.3765 0.3845 0.3905 0.3942 0.3957 0.3950 0.3920 0.3868 0.3794 0.3701 0.3590 0.3461 0.3319 0.3164 0.2999 0.2826 0.2648 0.2467 0.2285 0.2105 0.1927 0.1755 0.1588 0.1430 0.1280 0.1139 0.1007 0.0886 0.0775 0.0674 0.0583 0.0501 0.0428 0.0364 0.0307 0.0258 0.0216 0.0179 0.0148 0.0122 0.0099 0.0081 0.0065 0.0052 0.0042 0.0033 0.0026 -TraitA_T2 0.0007 0.0009 0.0012 0.0015 0.0019 0.0023 0.0029 0.0036 0.0044 0.0054 0.0066 0.0079 0.0096 0.0115 0.0138 0.0164 0.0194 0.0229 0.0269 0.0314 0.0365 0.0423 0.0487 0.0559 0.0638 0.0725 0.0820 0.0923 0.1035 0.1154 0.1281 0.1416 0.1558 0.1705 0.1859 0.2016 0.2177 0.2340 0.2503 0.2666 0.2825 0.2981 0.3131 0.3272 0.3405 0.3526 0.3635 0.3730 0.3810 0.3873 0.3919 0.3948 0.3958 0.3950 0.3923 0.3879 0.3818 0.3740 0.3647 0.3539 0.3419 0.3288 0.3147 0.2998 0.2844 0.2684 0.2522 0.2359 0.2196 0.2034 0.1876 0.1723 0.1574 0.1432 0.1296 0.1168 0.1048 0.0936 0.0832 0.0736 0.0648 0.0568 0.0495 0.0430 0.0372 0.0320 0.0274 0.0233 0.0198 0.0167 0.0141 0.0118 0.0098 0.0081 0.0067 0.0055 0.0045 0.0037 0.0030 0.0024 0.0019 -TraitA_T3 0.0007 0.0008 0.0011 0.0013 0.0017 0.0021 0.0027 0.0033 0.0041 0.0050 0.0062 0.0075 0.0092 0.0111 0.0133 0.0159 0.0189 0.0224 0.0264 0.0310 0.0362 0.0421 0.0486 0.0559 0.0641 0.0730 0.0828 0.0934 0.1049 0.1172 0.1304 0.1443 0.1589 0.1742 0.1900 0.2062 0.2227 0.2394 0.2561 0.2727 0.2889 0.3046 0.3195 0.3336 0.3467 0.3585 0.3688 0.3777 0.3849 0.3903 0.3939 0.3956 0.3954 0.3933 0.3893 0.3834 0.3759 0.3666 0.3559 0.3438 0.3306 0.3162 0.3011 0.2853 0.2690 0.2524 0.2357 0.2190 0.2025 0.1864 0.1707 0.1556 0.1411 0.1273 0.1144 0.1022 0.0909 0.0805 0.0709 0.0622 0.0542 0.0471 0.0407 0.0350 0.0299 0.0255 0.0216 0.0182 0.0153 0.0128 0.0106 0.0088 0.0072 0.0059 0.0048 0.0039 0.0032 0.0025 0.0020 0.0016 0.0013 -TraitB_T2 0.0006 0.0008 0.0010 0.0013 0.0017 0.0021 0.0027 0.0034 0.0043 0.0053 0.0066 0.0081 0.0100 0.0122 0.0148 0.0178 0.0214 0.0255 0.0302 0.0357 0.0419 0.0489 0.0568 0.0655 0.0752 0.0858 0.0975 0.1100 0.1235 0.1379 0.1532 0.1692 0.1858 0.2029 0.2204 0.2381 0.2557 0.2732 0.2902 0.3066 0.3222 0.3366 0.3498 0.3615 0.3715 0.3797 0.3859 0.3901 0.3921 0.3920 0.3897 0.3853 0.3788 0.3704 0.3602 0.3483 0.3350 0.3204 0.3047 0.2882 0.2711 0.2536 0.2359 0.2183 0.2008 0.1838 0.1672 0.1513 0.1362 0.1219 0.1085 0.0960 0.0845 0.0740 0.0644 0.0558 0.0480 0.0411 0.0350 0.0296 0.0250 0.0209 0.0174 0.0144 0.0119 0.0097 0.0079 0.0064 0.0052 0.0041 0.0033 0.0026 0.0021 0.0016 0.0013 0.0010 0.0008 0.0006 0.0004 0.0003 0.0003 -TraitC_T3 0.0000 0.0000 0.0000 0.0000 0.0000 0.0001 0.0001 0.0001 0.0002 0.0002 0.0003 0.0005 0.0006 0.0008 0.0011 0.0015 0.0019 0.0025 0.0033 0.0042 0.0054 0.0069 0.0087 0.0109 0.0135 0.0167 0.0205 0.0250 0.0303 0.0364 0.0435 0.0516 0.0608 0.0711 0.0826 0.0953 0.1091 0.1242 0.1403 0.1575 0.1755 0.1943 0.2136 0.2331 0.2527 0.2721 0.2910 0.3090 0.3259 0.3413 0.3550 0.3667 0.3762 0.3833 0.3878 0.3897 0.3889 0.3854 0.3793 0.3708 0.3599 0.3470 0.3322 0.3159 0.2983 0.2797 0.2605 0.2410 0.2214 0.2019 0.1829 0.1646 0.1471 0.1305 0.1150 0.1007 0.0875 0.0755 0.0648 0.0551 0.0466 0.0391 0.0326 0.0270 0.0222 0.0182 0.0147 0.0119 0.0095 0.0075 0.0060 0.0047 0.0036 0.0028 0.0022 0.0016 0.0012 0.0009 0.0007 0.0005 0.0004 diff --git a/sourcecodes/data/example_time_series/TEbthr.txt b/sourcecodes/data/example_time_series/TEbthr.txt deleted file mode 100644 index 2eb3c4fe..00000000 --- a/sourcecodes/data/example_time_series/TEbthr.txt +++ /dev/null @@ -1 +0,0 @@ -0.5 diff --git a/sourcecodes/data/example_time_series/TEbtier.txt b/sourcecodes/data/example_time_series/TEbtier.txt deleted file mode 100644 index 29aafcbe..00000000 --- a/sourcecodes/data/example_time_series/TEbtier.txt +++ /dev/null @@ -1 +0,0 @@ -4,Tier1,1,Genotype,Tier2,3,TraitA_T1,TraitB_T1,TraitC_T1,Tier3,3,TraitA_T2,TraitB_T2,TraitC_T2,Tier4,3,TraitA_T3,TraitB_T3,TraitC_T3, \ No newline at end of file diff --git a/sourcecodes/data/example_time_series/TEbtype.txt b/sourcecodes/data/example_time_series/TEbtype.txt deleted file mode 100644 index e4d7d174..00000000 --- a/sourcecodes/data/example_time_series/TEbtype.txt +++ /dev/null @@ -1,2 +0,0 @@ -Genotype TraitA_T1 TraitA_T2 TraitA_T3 TraitB_T1 TraitB_T2 TraitB_T3 TraitC_T1 TraitC_T2 TraitC_T3 -2 1 1 1 1 1 1 1 1 1 diff --git a/sourcecodes/data/example_time_series/TEbvar.txt b/sourcecodes/data/example_time_series/TEbvar.txt deleted file mode 100644 index 301160a9..00000000 --- a/sourcecodes/data/example_time_series/TEbvar.txt +++ /dev/null @@ -1 +0,0 @@ -8 \ No newline at end of file diff --git a/sourcecodes/data/example_time_series/TEbvardata.txt b/sourcecodes/data/example_time_series/TEbvardata.txt deleted file mode 100644 index f36841a7..00000000 --- a/sourcecodes/data/example_time_series/TEbvardata.txt +++ /dev/null @@ -1 +0,0 @@ -1.5028501775188 \ No newline at end of file diff --git a/sourcecodes/data/example_time_series/TEbvarname.txt b/sourcecodes/data/example_time_series/TEbvarname.txt deleted file mode 100644 index aa23daa0..00000000 --- a/sourcecodes/data/example_time_series/TEbvarname.txt +++ /dev/null @@ -1 +0,0 @@ -TraitA_T1 \ No newline at end of file diff --git a/sourcecodes/data/example_time_series/TEbwhite.txt b/sourcecodes/data/example_time_series/TEbwhite.txt deleted file mode 100644 index 83e81b8b..00000000 --- a/sourcecodes/data/example_time_series/TEbwhite.txt +++ /dev/null @@ -1 +0,0 @@ -From To diff --git a/sourcecodes/data/example_time_series/old/TEbrun_evidencemodified.sh b/sourcecodes/data/example_time_series/old/TEbrun_evidencemodified.sh deleted file mode 100644 index ff2eafcd..00000000 --- a/sourcecodes/data/example_time_series/old/TEbrun_evidencemodified.sh +++ /dev/null @@ -1,38 +0,0 @@ -#!/bin/sh -# script for execution of deployed applications -# -# Sets up the MCR environment for the current $ARCH and executes -# the specified command. -# -exe_name=$0 -exe_dir=`dirname "$0"` -echo "------------------------------------------" -if [ "x$1" = "x" ]; then - echo Usage: - echo $0 \<deployedMCRroot\> args -else - echo Setting up environment variables - MCRROOT="$1" - echo --- - LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; - MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; - XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; - export LD_LIBRARY_PATH; - export XAPPLRESDIR; - echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; - shift 1 - args= - while [ $# -gt 0 ]; do - token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank - args="${args} ${token}" - shift - done - "${exe_dir}"/evidencemodified TEb -fi -exit diff --git a/sourcecodes/data/example_time_series/old/TEbrun_initialstructure.sh b/sourcecodes/data/example_time_series/old/TEbrun_initialstructure.sh deleted file mode 100644 index 3417deda..00000000 --- a/sourcecodes/data/example_time_series/old/TEbrun_initialstructure.sh +++ /dev/null @@ -1,38 +0,0 @@ -#!/bin/sh -# script for execution of deployed applications -# -# Sets up the MCR environment for the current $ARCH and executes -# the specified command. -# -exe_name=$0 -exe_dir=`dirname "$0"` -echo "------------------------------------------" -if [ "x$1" = "x" ]; then - echo Usage: - echo $0 \<deployedMCRroot\> args -else - echo Setting up environment variables - MCRROOT="$1" - echo --- - LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; - MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; - XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; - export LD_LIBRARY_PATH; - export XAPPLRESDIR; - echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; - shift 1 - args= - while [ $# -gt 0 ]; do - token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank - args="${args} ${token}" - shift - done - "${exe_dir}"/initialstructure TEb -fi -exit diff --git a/sourcecodes/data/examplecar15node/MtXcontinuous_input.txt b/sourcecodes/data/examplecar15node/MtXcontinuous_input.txt deleted file mode 100644 index 0d55f02c..00000000 --- a/sourcecodes/data/examplecar15node/MtXcontinuous_input.txt +++ /dev/null @@ -1,1005 +0,0 @@ -Voltage_at_plug Car_cranks Spark_plugs Spark_quality Distributer Spark_timing Car_starts Headlights Alternator Charging_system Battery_voltage Battery_age Main_fuse Starter_system Starter_motor -3 2 3 3 2 3 2 3 2 2 3 3 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 1 2 -3 2 2 2 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -2 1 3 2 2 3 1 3 2 2 3 1 2 2 2 -3 2 2 2 2 3 2 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 2 3 2 2 3 1 2 2 2 -2 1 3 2 2 3 1 2 2 1 2 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 3 1 2 2 1 1 2 1 1 1 2 1 2 -3 1 3 3 2 2 1 3 2 2 3 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 2 1 2 3 1 1 2 1 1 2 2 1 2 -2 2 1 1 2 3 1 2 2 1 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 1 1 2 3 1 2 2 2 2 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 3 2 1 2 -3 2 2 2 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 2 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -1 1 3 1 2 2 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 1 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 2 2 -1 2 3 1 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 1 2 1 2 2 2 -2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 -2 1 1 1 2 3 1 2 2 1 2 1 2 1 2 -3 2 2 2 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 2 1 1 2 3 1 1 2 1 1 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 1 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 1 1 2 2 1 1 2 1 1 2 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 2 1 2 3 1 3 2 2 3 1 1 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 1 3 2 2 3 1 2 2 1 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -1 2 3 1 2 3 1 3 2 2 3 1 2 2 2 -2 2 3 2 2 2 1 2 2 2 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 1 2 1 2 2 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 2 1 2 3 1 1 2 1 1 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 2 1 1 2 1 1 2 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -2 1 3 2 2 3 1 2 2 2 2 1 2 1 1 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -2 1 2 1 2 3 1 2 2 2 2 2 2 2 2 -3 2 1 2 2 3 2 3 2 2 3 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -2 2 2 1 2 3 1 2 2 2 2 2 2 2 2 -1 2 2 1 2 3 1 3 2 2 3 2 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 2 1 2 3 1 1 2 1 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 2 2 2 1 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 3 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 1 2 1 2 2 2 -3 2 1 2 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 2 3 1 2 3 1 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 2 3 1 2 3 1 1 2 1 1 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -2 2 1 1 2 3 1 3 2 2 3 2 2 2 2 -3 2 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -2 1 1 1 2 3 1 2 2 1 2 1 2 2 2 -2 2 2 1 2 3 1 3 2 2 3 2 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 1 3 1 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 2 2 1 2 1 1 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 2 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 1 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -2 2 1 1 2 3 1 2 2 1 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 2 1 1 2 1 2 -3 1 2 2 2 2 1 3 2 2 3 3 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 1 3 2 2 3 1 2 2 2 2 1 2 2 2 -1 2 1 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -2 2 1 1 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 2 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 2 1 2 3 1 2 2 1 2 1 2 2 2 -1 1 3 1 2 3 1 2 2 2 2 1 1 1 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 2 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 2 2 2 1 2 3 2 2 2 -3 2 2 2 2 3 2 3 2 2 3 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 1 1 2 3 1 2 2 2 2 1 2 2 2 -3 2 1 2 2 3 1 3 2 2 3 1 2 2 2 -3 2 2 2 2 3 2 3 2 2 3 1 2 2 2 -3 1 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 2 1 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 2 2 2 3 1 3 2 2 3 1 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 3 2 2 3 2 1 1 2 -3 2 1 2 2 3 2 3 2 2 3 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -2 1 1 1 2 3 1 1 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 2 1 1 2 1 2 -2 2 3 2 2 3 1 2 2 1 2 1 2 2 2 -3 1 1 2 2 2 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 2 1 1 2 1 1 1 2 1 2 -3 2 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -2 1 3 2 2 3 1 2 2 1 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 2 1 2 3 1 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -3 2 2 2 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 2 1 1 2 1 1 1 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 3 2 1 2 -1 1 3 1 2 3 1 1 2 2 1 3 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 2 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 2 2 -2 2 3 2 2 3 2 2 2 1 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 2 1 2 2 1 2 -3 2 3 3 2 3 2 1 2 2 3 1 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 1 1 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 3 2 2 3 1 1 1 2 -2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 -3 2 3 3 2 2 2 3 2 2 3 3 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 2 2 2 1 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 1 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -3 2 1 2 2 3 2 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 1 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 3 1 2 3 1 1 2 1 1 2 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 2 2 2 1 2 1 2 1 2 -2 2 3 2 2 2 2 3 2 2 3 1 2 2 2 -3 2 1 2 2 3 2 2 2 2 3 1 2 2 2 -1 2 2 1 2 3 1 1 2 1 2 1 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 2 2 2 2 -3 2 2 2 2 3 1 3 2 2 3 1 2 2 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -1 2 3 1 2 3 1 2 2 2 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 1 2 2 2 1 3 2 2 3 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 2 1 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 1 2 1 2 2 2 -1 1 1 1 2 2 1 1 2 1 1 1 2 1 2 -1 2 3 1 2 3 1 3 2 2 3 1 2 2 2 -3 2 1 2 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 1 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 3 2 1 3 1 2 2 2 -3 2 1 2 2 3 2 3 2 2 3 1 2 2 2 -3 1 3 3 2 2 1 3 2 2 3 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 1 1 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2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 2 1 2 3 1 2 2 2 2 2 2 2 2 -2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 -2 1 2 1 2 3 1 2 2 1 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 1 2 1 2 3 1 2 2 2 2 3 2 2 2 -2 2 3 2 2 2 1 2 2 2 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 3 1 2 3 1 3 2 2 3 2 2 2 2 -1 1 3 1 2 3 1 1 2 2 1 2 2 1 2 -2 2 3 2 2 3 2 2 2 1 2 1 2 1 2 -3 2 2 2 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 1 2 1 1 2 1 1 1 2 1 2 -1 1 1 1 2 2 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 2 1 1 2 1 1 3 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 1 2 -2 2 3 2 2 3 2 3 2 2 3 1 2 2 2 -3 2 2 2 2 3 2 1 2 2 3 2 2 2 2 -2 1 1 1 2 3 1 2 2 1 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 2 1 1 2 1 1 2 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -2 1 3 2 2 2 1 2 2 1 2 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 2 3 2 2 3 1 2 2 2 -2 2 2 1 2 3 1 2 2 1 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 2 1 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 2 1 1 2 1 1 2 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 2 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -1 2 3 1 2 2 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 1 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 2 1 2 2 1 3 2 2 3 1 1 1 2 -1 1 1 1 2 3 1 1 2 1 1 2 2 1 2 -2 2 1 1 2 3 1 2 2 1 2 1 2 2 2 -2 1 3 2 2 3 1 2 2 1 2 1 2 1 2 -1 1 3 1 2 3 1 3 2 2 3 1 2 2 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 2 1 2 2 1 2 -2 2 3 2 2 3 2 2 2 1 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -2 2 1 1 2 3 1 2 2 1 2 1 2 2 2 -2 2 3 2 2 3 1 2 2 1 2 2 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 1 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 2 2 1 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 1 2 2 3 2 3 2 2 3 2 2 2 2 -3 2 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 1 2 2 2 3 1 3 2 2 3 1 2 2 2 -3 2 2 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 2 2 -3 2 1 2 2 3 2 3 2 1 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 3 1 2 3 1 3 2 1 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 2 2 2 1 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 1 1 2 3 1 1 2 1 1 1 1 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 2 2 2 3 2 3 2 2 3 1 2 2 2 -2 1 3 2 2 3 1 2 2 2 2 2 2 1 2 -2 1 3 2 2 3 1 2 2 1 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 1 2 2 3 2 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 2 2 2 2 2 1 2 2 2 -1 1 3 1 2 1 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 2 1 2 2 1 1 2 1 1 2 2 1 2 -3 2 3 3 2 2 2 3 2 2 3 2 2 2 2 -1 2 3 1 2 3 1 1 2 1 1 3 2 2 2 -3 2 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 2 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -2 2 3 2 2 3 1 2 2 2 2 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 2 2 -2 2 1 1 2 3 1 2 2 2 2 1 2 2 2 -3 1 2 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 3 1 1 2 1 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 1 1 1 2 3 1 3 2 2 3 1 2 2 2 -1 2 3 1 2 2 1 1 2 1 1 1 2 1 2 -1 2 1 1 2 3 1 1 2 1 1 2 2 2 2 -3 1 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 1 1 2 -2 2 1 1 2 3 1 2 2 1 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 2 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 2 1 1 2 1 1 2 2 1 2 -2 2 3 2 2 3 1 2 2 1 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -2 1 3 2 2 3 1 1 2 1 2 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -3 2 2 2 2 3 2 1 2 2 3 1 2 2 2 -3 1 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 2 1 2 3 1 1 2 1 1 2 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 1 2 1 2 2 2 -2 1 1 1 2 3 1 2 2 2 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 1 2 -1 1 3 1 2 3 1 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 1 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 1 1 2 2 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -2 1 3 2 2 3 1 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 1 2 2 1 2 1 2 2 2 -2 2 3 2 2 3 1 2 2 2 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 1 1 2 2 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 -2 2 3 2 2 3 2 1 2 2 2 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 1 3 2 2 3 1 2 2 1 2 1 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 2 2 1 2 -1 2 1 1 2 3 1 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 1 2 2 2 2 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 3 2 1 2 -1 2 3 1 2 3 1 1 2 1 1 2 2 2 2 -2 2 3 2 2 3 2 2 2 1 2 2 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 2 2 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 2 1 1 2 1 1 2 2 1 2 -3 1 1 2 2 3 1 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 2 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 3 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 1 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 2 2 3 2 2 3 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 3 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 2 2 2 3 1 3 2 2 3 1 2 2 2 -2 2 1 1 2 3 1 2 2 1 2 1 2 2 2 -1 1 3 1 2 2 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 2 1 3 2 2 3 1 1 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 1 2 2 2 2 3 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 2 2 2 3 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 1 1 2 2 3 1 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 1 2 2 2 2 2 2 2 2 -1 2 3 1 2 3 1 2 2 2 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 2 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 3 1 2 3 1 1 2 2 1 2 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -3 2 1 2 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 1 1 2 3 1 1 2 1 1 1 2 2 2 -3 2 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 1 2 2 2 2 3 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 2 2 2 3 1 3 2 2 3 1 2 2 2 -3 1 2 2 2 2 1 3 2 2 3 1 2 2 2 -2 2 1 1 2 3 1 2 2 2 2 1 2 2 2 -2 2 3 2 2 3 2 3 2 2 3 2 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 2 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 2 1 1 2 1 1 1 2 1 2 -3 1 1 2 2 3 1 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 -1 1 3 1 2 3 1 1 2 2 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -2 2 2 1 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 2 1 1 2 1 1 3 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 2 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 3 1 2 3 1 3 2 2 3 1 2 2 2 - - - diff --git a/sourcecodes/data/examplecar15node/MtXgraphviz.txt b/sourcecodes/data/examplecar15node/MtXgraphviz.txt deleted file mode 100644 index 56dcd027..00000000 --- a/sourcecodes/data/examplecar15node/MtXgraphviz.txt +++ /dev/null @@ -1,20 +0,0 @@ -digraph G { -size="10,10"; ratio = fill; -node [shape=square,width=1.5]; -Voltage_at_plug -> Spark_quality; -Car_cranks -> Car_starts; -Spark_plugs -> Spark_quality; -Spark_quality -> Car_starts; -Distributer -> Voltage_at_plug; -Distributer -> Spark_timing; -Spark_timing -> Car_starts; -Alternator -> Charging_system; -Charging_system -> Battery_voltage; -Battery_voltage -> Voltage_at_plug; -Battery_voltage -> Headlights; -Battery_age -> Battery_voltage; -Main_fuse -> Voltage_at_plug; -Main_fuse -> Starter_system; -Starter_system -> Car_cranks; -Starter_motor -> Starter_system; -} \ No newline at end of file diff --git a/sourcecodes/data/examplecar15node/MtXmap.txt b/sourcecodes/data/examplecar15node/MtXmap.txt deleted file mode 100644 index 8099a6e7..00000000 --- a/sourcecodes/data/examplecar15node/MtXmap.txt +++ /dev/null @@ -1,15 +0,0 @@ -Voltage_at_plug 0.827795 2.021000 -Car_cranks 0.500234 1.504000 -Spark_plugs 0.820310 2.042000 -Spark_quality 0.816376 2.014000 -Distributer 0.500241 1.497000 -Spark_timing 0.810222 2.014000 -Car_starts 0.500054 1.486000 -Headlights 0.810946 2.032000 -Alternator 0.500214 1.494000 -Charging_system 0.500234 1.496000 -Battery_voltage 0.806400 2.037000 -Battery_age 0.561294 1.708000 -Main_fuse 0.500150 1.490000 -Starter_system 0.499674 1.476000 -Starter_motor 0.500201 1.493000 diff --git a/sourcecodes/data/examplecar15node/MtXmapdata.txt b/sourcecodes/data/examplecar15node/MtXmapdata.txt deleted file mode 100644 index 67939bd1..00000000 --- a/sourcecodes/data/examplecar15node/MtXmapdata.txt +++ /dev/null @@ -1 +0,0 @@ -Starter_motor Main_fuse Starter_system Car_cranks Battery_age Alternator Charging_system Battery_voltage Headlights Distributer Spark_timing Voltage_at_plug Spark_plugs Spark_quality Car_starts diff --git a/sourcecodes/data/examplecar15node/MtXname.txt b/sourcecodes/data/examplecar15node/MtXname.txt deleted file mode 100644 index 2957eff7..00000000 --- a/sourcecodes/data/examplecar15node/MtXname.txt +++ /dev/null @@ -1 +0,0 @@ -Voltage_at_plug Car_cranks Spark_plugs Spark_quality Distributer Spark_timing Car_starts Headlights Alternator Charging_system Battery_voltage Battery_age Main_fuse Starter_system Starter_motor diff --git a/sourcecodes/data/examplecar15node/MtXnet_figure.txt b/sourcecodes/data/examplecar15node/MtXnet_figure.txt deleted file mode 100644 index 5a5a3bb9..00000000 --- a/sourcecodes/data/examplecar15node/MtXnet_figure.txt +++ /dev/null @@ -1,114 +0,0 @@ -15 -1800 1200 -Starter_motor 0 0 -Main_fuse 257 0 -Starter_system 373 171 -Car_cranks 343 343 -Battery_age 514 0 -Alternator 771 0 -Charging_system 823 171 -Battery_voltage 943 343 -Headlights 523 514 -Distributer 1029 0 -Spark_timing 1273 171 -Voltage_at_plug 1123 514 -Spark_plugs 1286 0 -Spark_quality 643 686 -Car_starts 823 857 -Starter_motor 2 -250 150 -0 -1 3 -1 0.5070 -2 0.4930 -Main_fuse 2 -250 150 -0 -2 3 12 -1 0.5100 -2 0.4900 -Starter_system 2 -250 150 -2 1 2 -1 4 -1 0.5238 -2 0.4762 -Car_cranks 2 -250 150 -1 3 -1 15 -1 0.4960 -2 0.5040 -Battery_age 3 -250 150 -0 -1 8 -1 0.3460 -2 0.6000 -3 0.0540 -Alternator 2 -250 150 -0 -1 7 -1 0.5060 -2 0.4940 -Charging_system 2 -250 150 -1 6 -1 8 -1 0.5040 -2 0.4960 -Battery_voltage 3 -250 150 -2 5 7 -2 9 12 -1 0.3072 -2 0.3486 -3 0.3442 -Headlights 3 -250 150 -1 8 -0 -1 0.3130 -2 0.3420 -3 0.3450 -Distributer 2 -250 150 -0 -2 11 12 -1 0.5030 -2 0.4970 -Spark_timing 3 -250 150 -1 10 -1 15 -1 0.3210 -2 0.3440 -3 0.3350 -Voltage_at_plug 3 -250 150 -3 2 8 10 -1 14 -1 0.3315 -2 0.3153 -3 0.3532 -Spark_plugs 3 -250 150 -0 -1 14 -1 0.3160 -2 0.3260 -3 0.3580 -Spark_quality 3 -250 150 -2 12 13 -1 15 -1 0.3266 -2 0.3334 -3 0.3400 -Car_starts 2 -250 150 -3 4 11 14 -0 -1 0.5158 -2 0.4842 diff --git a/sourcecodes/data/examplecar15node/MtXnnode.txt b/sourcecodes/data/examplecar15node/MtXnnode.txt deleted file mode 100644 index 60d3b2f4..00000000 --- a/sourcecodes/data/examplecar15node/MtXnnode.txt +++ /dev/null @@ -1 +0,0 @@ -15 diff --git a/sourcecodes/data/examplecar15node/MtXstructure_input.txt b/sourcecodes/data/examplecar15node/MtXstructure_input.txt deleted file mode 100644 index 549070d3..00000000 --- a/sourcecodes/data/examplecar15node/MtXstructure_input.txt +++ /dev/null @@ -1,17 +0,0 @@ -Voltage_at_plug Car_cranks Spark_plugs Spark_quality Distributer Spark_timing Car_starts Headlights Alternator Charging_system Battery_voltage Battery_age Main_fuse Starter_system Starter_motor -0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 -0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 -0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 -0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 -1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 -0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 -0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 -0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 -0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 -1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 -0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 -1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 -0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 -0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 - diff --git a/sourcecodes/data/examplecar15node/MtXstructure_old.txt b/sourcecodes/data/examplecar15node/MtXstructure_old.txt deleted file mode 100644 index cad36b88..00000000 --- a/sourcecodes/data/examplecar15node/MtXstructure_old.txt +++ /dev/null @@ -1,15 +0,0 @@ -Voltage_at_plug 0.3315 0.3153 0.3532 -Spark_quality 0.3266 0.3334 0.3400 -Car_cranks 0.4960 0.5040 -Car_starts 0.5158 0.4842 -Spark_plugs 0.3160 0.3260 0.3580 -Distributer 0.5030 0.4970 -Spark_timing 0.3210 0.3440 0.3350 -Alternator 0.5060 0.4940 -Charging_system 0.5040 0.4960 -Battery_voltage 0.3072 0.3486 0.3442 -Headlights 0.3130 0.3420 0.3450 -Battery_age 0.3460 0.6000 0.0540 -Main_fuse 0.5100 0.4900 -Starter_system 0.5238 0.4762 -Starter_motor 0.5070 0.4930 diff --git a/sourcecodes/data/examplecar15node/MtXtype.txt b/sourcecodes/data/examplecar15node/MtXtype.txt deleted file mode 100644 index 75ee3397..00000000 --- a/sourcecodes/data/examplecar15node/MtXtype.txt +++ /dev/null @@ -1,2 +0,0 @@ -Voltage_at_plug Car_cranks Spark_plugs Spark_quality Distributer Spark_timing Car_starts Headlights Alternator Charging_system Battery_voltage Battery_age Main_fuse Starter_system Starter_motor -3 2 3 3 2 3 2 3 2 2 3 3 2 2 2 diff --git a/sourcecodes/data/examplecar15node/eIAcontinuous_input.txt b/sourcecodes/data/examplecar15node/eIAcontinuous_input.txt deleted file mode 100644 index 66dddb9f..00000000 --- a/sourcecodes/data/examplecar15node/eIAcontinuous_input.txt +++ /dev/null @@ -1,1003 +0,0 @@ -Voltage_at_plug Car_cranks Spark_plugs Spark_quality Distributer Spark_timing Car_starts Headlights Alternator Charging_system Battery_voltage Battery_age Main_fuse Starter_system Starter_motor -3 2 3 3 2 3 2 3 2 2 3 3 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 1 2 -3 2 2 2 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -2 1 3 2 2 3 1 3 2 2 3 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1 1 2 1 2 -1 2 3 1 1 2 1 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 1 1 1 2 3 1 3 2 2 3 1 2 2 2 -1 2 3 1 2 2 1 1 2 1 1 1 2 1 2 -1 2 1 1 2 3 1 1 2 1 1 2 2 2 2 -3 1 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 1 1 2 -2 2 1 1 2 3 1 2 2 1 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 2 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 2 1 1 2 1 1 2 2 1 2 -2 2 3 2 2 3 1 2 2 1 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -2 1 3 2 2 3 1 1 2 1 2 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -3 2 2 2 2 3 2 1 2 2 3 1 2 2 2 -3 1 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 2 1 2 3 1 1 2 1 1 2 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 1 2 1 2 2 2 -2 1 1 1 2 3 1 2 2 2 2 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 1 2 -1 1 3 1 2 3 1 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 1 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 1 1 2 2 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -2 1 3 2 2 3 1 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 1 2 2 1 2 1 2 2 2 -2 2 3 2 2 3 1 2 2 2 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 1 1 2 2 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 -2 2 3 2 2 3 2 1 2 2 2 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 1 3 2 2 3 1 2 2 1 2 1 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 2 2 1 2 -1 2 1 1 2 3 1 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 1 2 2 2 2 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 3 2 1 2 -1 2 3 1 2 3 1 1 2 1 1 2 2 2 2 -2 2 3 2 2 3 2 2 2 1 2 2 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 2 2 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 2 1 1 2 1 1 2 2 1 2 -3 1 1 2 2 3 1 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 2 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 3 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 1 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 2 2 3 2 2 3 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 3 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 2 2 2 3 1 3 2 2 3 1 2 2 2 -2 2 1 1 2 3 1 2 2 1 2 1 2 2 2 -1 1 3 1 2 2 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 2 1 3 2 2 3 1 1 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 2 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 1 2 2 2 2 3 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 3 3 2 3 2 2 2 2 3 1 2 1 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 1 1 2 2 3 1 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 1 2 2 2 2 2 2 2 2 -1 2 3 1 2 3 1 2 2 2 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 2 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -3 2 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 2 2 1 2 -1 1 3 1 2 3 1 1 2 2 1 2 2 1 2 -3 1 3 3 2 3 1 3 2 2 3 1 2 2 2 -3 2 1 2 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 2 2 3 2 2 3 1 2 2 2 -1 2 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 1 1 2 3 1 1 2 1 1 1 2 2 2 -3 2 1 2 2 3 1 3 2 2 3 1 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 1 2 2 2 2 3 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 2 2 2 3 1 3 2 2 3 1 2 2 2 -3 1 2 2 2 2 1 3 2 2 3 1 2 2 2 -2 2 1 1 2 3 1 2 2 2 2 1 2 2 2 -2 2 3 2 2 3 2 3 2 2 3 2 2 2 2 -1 1 2 1 2 3 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 2 1 1 2 1 1 1 2 1 2 -1 1 3 1 2 2 1 1 2 1 1 1 2 1 2 -3 1 1 2 2 3 1 3 2 2 3 1 2 2 2 -2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 -1 1 3 1 2 3 1 1 2 2 1 1 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -3 2 3 3 2 3 2 3 2 2 3 2 2 2 2 -2 2 2 1 2 3 1 3 2 2 3 1 2 2 2 -1 1 3 1 2 2 1 1 2 1 1 3 2 1 2 -3 2 3 3 2 3 2 3 2 2 3 1 2 2 2 -1 1 1 1 2 3 1 1 2 1 1 1 2 1 2 -2 2 3 2 2 3 2 2 2 2 2 1 2 2 2 -1 1 3 1 2 3 1 1 2 1 1 1 2 1 2 -1 2 3 1 2 3 1 3 2 2 3 1 2 2 2 - diff --git a/sourcecodes/data/examplecar15node/eIAgraphviz.txt b/sourcecodes/data/examplecar15node/eIAgraphviz.txt deleted file mode 100644 index 56dcd027..00000000 --- a/sourcecodes/data/examplecar15node/eIAgraphviz.txt +++ /dev/null @@ -1,20 +0,0 @@ -digraph G { -size="10,10"; ratio = fill; -node [shape=square,width=1.5]; -Voltage_at_plug -> Spark_quality; -Car_cranks -> Car_starts; -Spark_plugs -> Spark_quality; -Spark_quality -> Car_starts; -Distributer -> Voltage_at_plug; -Distributer -> Spark_timing; -Spark_timing -> Car_starts; -Alternator -> Charging_system; -Charging_system -> Battery_voltage; -Battery_voltage -> Voltage_at_plug; -Battery_voltage -> Headlights; -Battery_age -> Battery_voltage; -Main_fuse -> Voltage_at_plug; -Main_fuse -> Starter_system; -Starter_system -> Car_cranks; -Starter_motor -> Starter_system; -} \ No newline at end of file diff --git a/sourcecodes/data/examplecar15node/eIAmap.txt b/sourcecodes/data/examplecar15node/eIAmap.txt deleted file mode 100644 index 9f705391..00000000 --- a/sourcecodes/data/examplecar15node/eIAmap.txt +++ /dev/null @@ -1,15 +0,0 @@ -Voltage_at_plug 0.908185 1.905000 -Car_cranks 0.500106 1.488000 -Spark_plugs 0.778947 2.543000 -Spark_quality 0.853627 1.757000 -Distributer 0.099549 1.990000 -Spark_timing 0.357390 2.880000 -Car_starts 0.469352 1.327000 -Headlights 0.917301 1.951000 -Alternator 0.044699 1.998000 -Charging_system 0.500246 1.502000 -Battery_voltage 0.915330 2.003000 -Battery_age 0.500554 1.236000 -Main_fuse 0.121613 1.985000 -Starter_system 0.494126 1.578000 -Starter_motor 0.063151 1.996000 diff --git a/sourcecodes/data/examplecar15node/eIAmapdata.txt b/sourcecodes/data/examplecar15node/eIAmapdata.txt deleted file mode 100644 index 67939bd1..00000000 --- a/sourcecodes/data/examplecar15node/eIAmapdata.txt +++ /dev/null @@ -1 +0,0 @@ -Starter_motor Main_fuse Starter_system Car_cranks Battery_age Alternator Charging_system Battery_voltage Headlights Distributer Spark_timing Voltage_at_plug Spark_plugs Spark_quality Car_starts diff --git a/sourcecodes/data/examplecar15node/eIAname.txt b/sourcecodes/data/examplecar15node/eIAname.txt deleted file mode 100644 index 2957eff7..00000000 --- a/sourcecodes/data/examplecar15node/eIAname.txt +++ /dev/null @@ -1 +0,0 @@ -Voltage_at_plug Car_cranks Spark_plugs Spark_quality Distributer Spark_timing Car_starts Headlights Alternator Charging_system Battery_voltage Battery_age Main_fuse Starter_system Starter_motor diff --git a/sourcecodes/data/examplecar15node/eIAnet_figure.txt b/sourcecodes/data/examplecar15node/eIAnet_figure.txt deleted file mode 100644 index 29896806..00000000 --- a/sourcecodes/data/examplecar15node/eIAnet_figure.txt +++ /dev/null @@ -1,114 +0,0 @@ -15 -1800 1200 -Starter_motor 0 0 -Main_fuse 257 0 -Starter_system 373 171 -Car_cranks 343 343 -Battery_age 514 0 -Alternator 771 0 -Charging_system 823 171 -Battery_voltage 943 343 -Headlights 523 514 -Distributer 1029 0 -Spark_timing 1273 171 -Voltage_at_plug 1123 514 -Spark_plugs 1286 0 -Spark_quality 643 686 -Car_starts 823 857 -Starter_motor 2 -250 150 -0 -1 3 -1 0.0039 -2 0.9961 -Main_fuse 2 -250 150 -0 -2 3 12 -1 0.0149 -2 0.9851 -Starter_system 2 -250 150 -2 1 2 -1 4 -1 0.4211 -2 0.5789 -Car_cranks 2 -250 150 -1 3 -1 15 -1 0.5109 -2 0.4891 -Battery_age 3 -250 150 -0 -1 8 -1 0.7989 -2 0.1661 -3 0.0350 -Alternator 2 -250 150 -0 -1 7 -1 0.0020 -2 0.9980 -Charging_system 2 -250 150 -1 6 -1 8 -1 0.4988 -2 0.5012 -Battery_voltage 3 -250 150 -2 5 7 -2 9 12 -1 0.4181 -2 0.1633 -3 0.4186 -Headlights 3 -250 150 -1 8 -0 -1 0.4470 -2 0.1573 -3 0.3957 -Distributer 2 -250 150 -0 -2 11 12 -1 0.0098 -2 0.9902 -Spark_timing 3 -250 150 -1 10 -1 15 -1 0.0088 -2 0.0982 -3 0.8930 -Voltage_at_plug 3 -250 150 -3 2 8 10 -1 14 -1 0.4646 -2 0.1681 -3 0.3674 -Spark_plugs 3 -250 150 -0 -1 14 -1 0.1791 -2 0.0990 -3 0.7219 -Spark_quality 3 -250 150 -2 12 13 -1 15 -1 0.5114 -2 0.2233 -3 0.2652 -Car_starts 2 -250 150 -3 4 11 14 -0 -1 0.7903 -2 0.2097 diff --git a/sourcecodes/data/examplecar15node/eIAnlevels.txt b/sourcecodes/data/examplecar15node/eIAnlevels.txt deleted file mode 100644 index 7ccbca8e..00000000 --- a/sourcecodes/data/examplecar15node/eIAnlevels.txt +++ /dev/null @@ -1,15 +0,0 @@ -Voltage_at_plug 1 2 3 -Car_cranks 1 2 -Spark_plugs 1 2 3 -Spark_quality 1 2 3 -Distributer 1 2 -Spark_timing 1 2 3 -Car_starts 1 2 -Headlights 1 2 3 -Alternator 1 2 -Charging_system 1 2 -Battery_voltage 1 2 3 -Battery_age 1 2 3 -Main_fuse 1 2 -Starter_system 1 2 -Starter_motor 1 2 diff --git a/sourcecodes/data/examplecar15node/eIAnnode.txt b/sourcecodes/data/examplecar15node/eIAnnode.txt deleted file mode 100644 index 60d3b2f4..00000000 --- a/sourcecodes/data/examplecar15node/eIAnnode.txt +++ /dev/null @@ -1 +0,0 @@ -15 diff --git a/sourcecodes/data/examplecar15node/eIAparameters.txt b/sourcecodes/data/examplecar15node/eIAparameters.txt deleted file mode 100644 index 57373374..00000000 --- a/sourcecodes/data/examplecar15node/eIAparameters.txt +++ /dev/null @@ -1,82 +0,0 @@ -Voltage_at_plug -Discrete node with 3 states -1 0.4646 -2 0.1681 -3 0.3674 - -Car_cranks -Discrete node with 2 states -1 0.5109 -2 0.4891 - -Spark_plugs -Discrete node with 3 states -1 0.1791 -2 0.0990 -3 0.7219 - -Spark_quality -Discrete node with 3 states -1 0.5114 -2 0.2233 -3 0.2652 - -Distributer -Discrete node with 2 states -1 0.0098 -2 0.9902 - -Spark_timing -Discrete node with 3 states -1 0.0088 -2 0.0982 -3 0.8930 - -Car_starts -Discrete node with 2 states -1 0.7903 -2 0.2097 - -Headlights -Discrete node with 3 states -1 0.4470 -2 0.1573 -3 0.3957 - -Alternator -Discrete node with 2 states -1 0.0020 -2 0.9980 - -Charging_system -Discrete node with 2 states -1 0.4988 -2 0.5012 - -Battery_voltage -Discrete node with 3 states -1 0.4181 -2 0.1633 -3 0.4186 - -Battery_age -Discrete node with 3 states -1 0.7989 -2 0.1661 -3 0.0350 - -Main_fuse -Discrete node with 2 states -1 0.0149 -2 0.9851 - -Starter_system -Discrete node with 2 states -1 0.4211 -2 0.5789 - -Starter_motor -Discrete node with 2 states -1 0.0039 -2 0.9961 - diff --git a/sourcecodes/data/examplecar15node/eIAstructure_old.txt b/sourcecodes/data/examplecar15node/eIAstructure_old.txt deleted file mode 100644 index 774a14fe..00000000 --- a/sourcecodes/data/examplecar15node/eIAstructure_old.txt +++ /dev/null @@ -1,15 +0,0 @@ -Voltage_at_plug 0.4646 0.1681 0.3674 -Spark_quality 0.5114 0.2233 0.2652 -Car_cranks 0.5109 0.4891 -Car_starts 0.7903 0.2097 -Spark_plugs 0.1791 0.0990 0.7219 -Distributer 0.0098 0.9902 -Spark_timing 0.0088 0.0982 0.8930 -Alternator 0.0020 0.9980 -Charging_system 0.4988 0.5012 -Battery_voltage 0.4181 0.1633 0.4186 -Headlights 0.4470 0.1573 0.3957 -Battery_age 0.7989 0.1661 0.0350 -Main_fuse 0.0149 0.9851 -Starter_system 0.4211 0.5789 -Starter_motor 0.0039 0.9961 diff --git a/sourcecodes/data/examplecar15node/eIAtype.txt b/sourcecodes/data/examplecar15node/eIAtype.txt deleted file mode 100644 index 75ee3397..00000000 --- a/sourcecodes/data/examplecar15node/eIAtype.txt +++ /dev/null @@ -1,2 +0,0 @@ -Voltage_at_plug Car_cranks Spark_plugs Spark_quality Distributer Spark_timing Car_starts Headlights Alternator Charging_system Battery_voltage Battery_age Main_fuse Starter_system Starter_motor -3 2 3 3 2 3 2 3 2 2 3 3 2 2 2 diff --git a/sourcecodes/data/examplecar15node/old/MtXrun_initialstructure.sh b/sourcecodes/data/examplecar15node/old/MtXrun_initialstructure.sh deleted file mode 100644 index 8012f054..00000000 --- a/sourcecodes/data/examplecar15node/old/MtXrun_initialstructure.sh +++ /dev/null @@ -1,38 +0,0 @@ -#!/bin/sh -# script for execution of deployed applications -# -# Sets up the MCR environment for the current $ARCH and executes -# the specified command. -# -exe_name=$0 -exe_dir=`dirname "$0"` -echo "------------------------------------------" -if [ "x$1" = "x" ]; then - echo Usage: - echo $0 \<deployedMCRroot\> args -else - echo Setting up environment variables - MCRROOT="$1" - echo --- - LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64; - MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ; - LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ; - XAPPLRESDIR=${MCRROOT}/X11/app-defaults ; - export LD_LIBRARY_PATH; - export XAPPLRESDIR; - echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH}; - shift 1 - args= - while [ $# -gt 0 ]; do - token=`echo "$1" | sed 's/ /\\\\ /g'` # Add blackslash before each blank - args="${args} ${token}" - shift - done - "${exe_dir}"/initialstructure MtX -fi -exit |