diff options
Diffstat (limited to 'sourcecodes/upload_structure_file.php')
| -rw-r--r-- | sourcecodes/upload_structure_file.php | 270 |
1 files changed, 49 insertions, 221 deletions
diff --git a/sourcecodes/upload_structure_file.php b/sourcecodes/upload_structure_file.php index b876d639..cb59f560 100644 --- a/sourcecodes/upload_structure_file.php +++ b/sourcecodes/upload_structure_file.php @@ -1,13 +1,17 @@ <?php + //Going to modify this so it just writes the uploaded data to a file. + //Standardization and determining other factors will be performed in + // a Matlab/Octave script. + include("header_new.inc"); include("header_batchsearch.inc"); - -////////////////continuous/////////////// +include("runtime_check.php"); $searchID=""; $UploadValue="NO"; $TextFile=$HTTP_POST_FILES["MyFile"]["name"]; -/////////////Generate a key value for current use/////////////////////////////////////////////// + +/////////////Generate a random key///////////////////// $alphas=array(); $alphas = array_merge(range('A', 'Z'), range('a', 'z')); @@ -23,17 +27,29 @@ if($_POST["My_key"]!="") $keyval=$_POST["My_key"]; -$sid="continuous_input"; -$dir="./data/$keyval"; -$TextinFileFinal=$dir.$sid.".txt"; +$sid=$keyval."continuous_input"; +$dir="./data/"; -$TextinFile=$dir.$sid."_temp.txt"; +$TextinFile=$dir.$sid."_orig.txt"; -$TextinFilenamelist=$dir."name.txt"; if(isset($HTTP_POST_VARS["searchkey"])) { $searchID=$HTTP_POST_VARS["searchkey"]; + +} + +if($searchID=="") +{ +?> + +<!-- Site navigation menu --> +<ul class="navbar"> + <li><a href="help.php#file_format" target="_blank">Data formatting guidelines</a> + <li><a href="help.php" target="_blank">Help</a> + <li><a href="home.php">Home</a> +</ul> +<?php } if(isset($HTTP_POST_VARS["MyUpload"])) @@ -52,9 +68,8 @@ if(isset($HTTP_POST_VARS["MyUpload"])) } else { - $searchID=file_get_contents("$TextinFile"); - //fclose($fh); - unlink($TextinFile); + $searchID=file_get_contents("$TextinFile"); + //unlink($TextinFile); } @@ -67,36 +82,7 @@ if(isset($HTTP_POST_VARS["MyUpload"])) } } - -if($searchID!="") -{ ?> - -<!-- Site navigation menu --> -<ul class="navbar2"> - <li><a href="net_structure.php?My_key=<?php print($keyval);?>">Upload structure file</a> -</ul> -<ul class="navbar"> - <li><a href="help.php#file_format" target="_blank">Data formatting guidelines</a> - <li><a href="help.php" target="_blank">Help</a> - <li><a href="home.php">Home</a> -</ul> -<?php -} -else -{ - -?> -<!-- Site navigation menu --> -<ul class="navbar"> - <li><a href="help.php#file_format" target="_blank">Data formatting guidelines</a> - <li><a href="help.php" target="_blank">Help</a> - <li><a href="home.php">Home</a> -</ul> -<?php -} -?> - <div id="outernew"> <h2><font>Upload data file</font></h2> <FORM name="key_search" enctype="multipart/form-data" ACTION="upload_structure_file.php" METHOD=POST> @@ -117,199 +103,41 @@ else </tr> <tr> <td> - <INPUT font-weight:bold" TYPE="submit" value=" Load example data " onclick="return demo();">    + <INPUT TYPE="submit" value=" Load example data " onclick="return demo();">    <INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> > </td> </tr> </table> </FORM> - </div> <?php - $str_arr=array(); - $searchID=trim($searchID); - $str_arr=explode("\n",$searchID); - $data=array(); - - - $fph = fopen($TextinFilenamelist,"w"); - $fpmain = fopen($TextinFileFinal,"w"); - - $cont_arr=array(); - $cont_arr_tmp=array(); - - - $data_type=array(); - $level_arr=array(); - -//Who is discrete? Who is continuous? - $i=0; - $lc=0; - foreach($str_arr as $line) - { - $line=trim($line); - if($lc==0) - { - fwrite($fph, "$line\n"); - fprintf($fpmain, "$line\n"); - $name_t=$line; - - fclose($fph); - $data=explode("\t",$line); - $j=0; - foreach($data as $d_c) - { - $d_c=trim($d_c); - $level_arr[$j][0]=$d_c; //variable name y for - - $data_type[$j]=0; - $j++; - } - $lcc=$j; //$lcc=number of column in the input file - } - else - { - - $strline=""; - $data=explode("\t",$line); - $j=0; - foreach($data as $d_c) - { - $d_c=trim($d_c); - $cont_arr[$i][$j]=$d_c; - $cont_arr_tmp[$i][$j]=$d_c; - - $mystring = $d_c; - $findme = '.'; - $pos = strpos($mystring, $findme); - $strline.="1\t"; - - if ($pos != false) - { - $data_type[$j]=1; - } - $j++; - } - $i++; - - } - $lc++; - - } -$lc--; //$lc=number of rows in the input file -//Now count number of labels for discrete variables and populate the $data_type[$j] -$data_count=0; -$l_type=""; -for($j=0;$j<$lcc;$j++) -{ - - if($data_type[$j]!=1) - { - $data_count=0; - for($i=0;$i<$lc;$i++) - { - $vi=$i+1; - for($ii=$vi;$ii<$lc;$ii++) - { - if($cont_arr[$i][$j]==$cont_arr[$ii][$j] && $cont_arr[$i][$j]!=-9999) - { - $cont_arr[$ii][$j]=-9999; - - } - } - - - } - for($i=0;$i<$lc;$i++) - { - if($cont_arr[$i][$j]!=-9999 && $cont_arr[$i][$j]!="") - { - // $data_count_l=$data_count+2; - $data_count++; - $level_arr[$j][$data_count]=$cont_arr[$i][$j]; - } - } - $data_type[$j]=$data_count; - - - } - if($j==0) - $l_type.=$data_type[$j]; - else - $l_type.="\t".$data_type[$j]; - - } - -//////////////////////////////////// -$fptype = fopen($dir."type.txt","w"); -$fpnode= fopen($dir."nnode.txt","w"); -fwrite($fpnode,"$lcc\n"); - -$flevel = fopen($dir."nlevels.txt","w"); -//print in level mapping file for discrete variables -for($j=0;$j<$lcc;$j++) -{ - if($data_type[$j]>1) - { - fprintf($flevel,"%s",$level_arr[$j][0]); - $m=$data_type[$j]; - for($jj=1;$jj<=$m;$jj++) - { - fprintf($flevel,"\t%s",$level_arr[$j][$jj]); - } - - fprintf($flevel,"\n"); - } -} - -fwrite($fptype,"$name_t\n"); -for($j=0;$j<$lcc;$j++) -{ - fprintf($fptype,"$data_type[$j]\t"); -} -fwrite($fptype,"\n"); -//////////////////////////////////// - - -fwrite($fpmain, "$l_type\n"); -$l_c=0; -//perform discrete level replacement -for($m=0;$m<$lcc;$m++) //column +if($searchID!="") { - if($data_type[$m]>1) + if ($UploadValue=="NO") { - $r=$data_type[$m]; - for($j=1;$j<=$r;$j++) - { - $search=$level_arr[$m][$j]; - $replace=$j."#"; - for($n=0;$n<$lc;$n++) //row - { - $val=$cont_arr_tmp[$n][$m]; - if($val==$search) - $cont_arr_tmp[$n][$m]=$replace; //alter levels - } - } - for($n=0;$n<$lc;$n++) //row - $cont_arr_tmp[$n][$m]=str_replace('#','',$cont_arr_tmp[$n][$m]); - } -} - -//write data to output file -for($j=0;$j<$lc;$j++) -{ - fprintf($fpmain,"%s",$cont_arr_tmp[$j][0]); - for($jj=1;$jj<$lcc;$jj++) - fprintf($fpmain,"\t%s",$cont_arr_tmp[$j][$jj]); - fprintf($fpmain, "\n"); + $fpdata = fopen($dir.$keyval."continuous_input_orig.txt","w"); + fwrite($fpdata,$searchID); + } + shell_exec('./run_prep_input '.$keyval); +?> +<ul class="navbar2"> + <li><a href="net_structure.php?My_key=<?php print($keyval);?>">Upload structure file</a> + <li><a href="javascript:void(0);" +NAME="InputCheck" title="InputCheck" + onClick=window.open("input_check.php?My_key=<?php print($keyval);?>","Rat//ting","width=950,height=270,0,status=0,");>View uploaded variables and data</a> +</ul> +<ul class="navbar"> + <li><a href="help.php#file_format" target="_blank">Data formatting guidelines</a> + <li><a href="help.php" target="_blank">Help</a> + <li><a href="home.php">Home</a> +</ul> +<?php } - -fclose($fpmain); - - - ?> +</body> +</html> + |