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-rw-r--r--sourcecodes/parameter_learning/code_backup/readInputStructure.m72
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diff --git a/sourcecodes/parameter_learning/code_backup/readInputStructure.m b/sourcecodes/parameter_learning/code_backup/readInputStructure.m
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+function [ dag ] = readInputStructure( sfile, labels )
+%readInputStructure Read in file with structure information
+    %   
+    %Input:
+	%     sfile  = name of the file containing the data (required)
+	%     labels = cell array with node labels. (required)
+    %     nnodes  = number of columns in the data file. (required)  
+    %
+    %   Function assumes the following format for the structure input file:
+    %       1) The first line has node labels.  These must be the same as 
+    %           in the input data file.  They cannot contain spaces.
+    %       2) The remainder of the file contains the structure of the dag.
+    %           The structure of a graph is a N-by-N matrix, where N is the
+    %           number of nodes.  There are 1's in the matrix representing
+    %           parent-child relationships.  For each 1, the row indicates
+    %           the parent and the column indicates the child.  For
+    %           example, a 1 in the (2,3) position of the matrix indicates
+    %           that there is an arc pointing from node 2 to node 3.
+    %        
+    %
+	%  Output:
+    %     dag = matrix with the structure.
+%
+%   Read in first line of the structure file
+%  open file for input, include error handling
+fin = fopen(sfile,'r');
+if fin < 0
+   error(['Could not open ',sfile,' for input']);
+end
+
+nnodes = size(labels,2);
+% Read in first line to get the node labels.
+labels_test = cell(1,nnodes);
+buffer = fgetl(fin);    %get header line as a string
+for j=1:nnodes
+    [next,buffer] = strtok(buffer);
+    labels_test{j} = next;  
+end
+    
+for j=1:nnodes
+    if labels_test{j} ~= labels{j}
+        fprintf(['Label of node ',j,' is not consistent in input and structure files'])
+    end
+end
+
+data = fscanf(fin,'%f');
+  
+nd = length(data);        %  total number of data points
+nr = nd/nnodes;            %  number of rows; check (next statement) to make sure
+if nr ~= round(nd/nnodes)
+   fprintf(1,'\ndata: nrow = %f\tncol = %d\n',nr,nnodes);
+   fprintf(1,'number of data points = %d does not equal nrow*ncol\n',nd);
+   error('Structure file does not have the correct dimensions (1)')
+end
+% check to make sure that structure is square
+if nr ~= nnodes
+    error('Structure file does not have the correct dimensions (2)')
+end
+
+data = reshape(data,nnodes,nr)';   %  have to transpose the reshaped array
+
+
+dag = zeros(nnodes,nnodes);
+for i = 1:size(data,1)
+    for j = 1:size(data,2)
+        dag(i,j) = data(i,j);
+    end
+end
+
+
+end
+%  end of readInputStructure.m