diff options
Diffstat (limited to 'sourcecodes/network_layout_inv_example.php')
| -rw-r--r-- | sourcecodes/network_layout_inv_example.php | 666 |
1 files changed, 0 insertions, 666 deletions
diff --git a/sourcecodes/network_layout_inv_example.php b/sourcecodes/network_layout_inv_example.php deleted file mode 100644 index 076832b6..00000000 --- a/sourcecodes/network_layout_inv_example.php +++ /dev/null @@ -1,666 +0,0 @@ -<?php - //include("structuremap.php"); -include("header_batchsearch.inc"); -include("input_validate.php"); - -function levelmap($inx,$name,$mapdata) -{ - -$leve_l=array(); -$leve_l=explode("\n",$mapdata); -$leve_d=array(); - -foreach($leve_l as $l) -{ - $l=trim($l); - $leve_d=explode("\t",$l); - $inxname=trim($leve_d[0]); - $name=trim($name); - if($inxname==$name) - return $leve_d[$inx]; -} - -} - -////////////////////////////////////Read data from net_figure file///////////////////////Graphp Display///////////////////////////////////////////// - -$keyval=valid_keyval($_GET["My_key"]); -$dir="./data/"; - -$lfile=$dir.$keyval."nlevels.txt"; -$levelmap=file_get_contents($lfile); - - - - -$matfile=$dir."$keyval"."net_figure.txt"; - - -$data_val=""; - -$matrix=file("$matfile"); -$matrix1=file_get_contents("$matfile"); //file("$matfile"); - -$str_arrmat=array(); -$str_arrmat=explode("\n",$matrix1); - - -if($str_arrmat[2]=="" || $matrix1=="") -{ -?> -<h1><font color=blue>Error: Unable to display your network structure.</font></h1> - -<?php -exit; -} - -$datamat=array(); -$data_read=array(); - -$node=trim($str_arrmat[0]); -/* -if($node<=5) -{ - $width=200; - $height=150; - $font=14; -} -else if($node>5 && $node<=7) -{ - $width=150; - $height=120; - $font=12; - -} -else if($node>7 && $node<=10) -{ - $width=110; - $height=85; - $font=10; -} -else -{ - $width=80; - $height=60; - $font=8; -} -*/ - $width=150; - $height=150; - $font=12; - -$r_index=$node+2; - -for($i=0;$i<$node;$i++) -{ -$datamat=explode("\t",$str_arrmat[$r_index]); -$data_read[$i][0]=trim($datamat[0]); //name -$data_read[$i][1]=trim($datamat[1]); //datatype -$col_in=2; -$r_index+=4; - if($datamat[1]==1) //type=coninuous - { - for($j=1;$j<=101;$j++) - { - $datamat=explode("\t",$str_arrmat[$r_index]); - $data_read[$i][$col_in]=trim($datamat[0]); //x data - // echo $data_read[$i][$col_in]; - // echo ' '; - - $col_in++; - $data_read[$i][$col_in]=trim($datamat[1]); //y data - // echo $data_read[$i][$col_in]; - // echo ' '; - - $col_in++; - $r_index++; // increment to point next data - // echo "<br />"; - } - } - if($datamat[1]>1) //type=descrete - { - $iter=$datamat[1]; - for($j=1;$j<=$iter;$j++) - { - $datamat=explode("\t",$str_arrmat[$r_index]); - $data_read[$i][$col_in]=trim($datamat[0]); //x data - $data_read[$i][$col_in]=levelmap($data_read[$i][$col_in],$data_read[$i][0],$levelmap); - - // echo $data_read[$i][$col_in]; - // echo ' '; - - $col_in++; - $data_read[$i][$col_in]=trim($datamat[1]); //y data - // echo $data_read[$i][$col_in]; - //echo ' '; - - $col_in++; - $r_index++; // increment to point next data - //echo "<br />"; - } - } - -} - - - - -////////////////////////////////////////////////Graphviz data read//////////////////////////////////////////////////////////////////////////////// -$grv=$dir.$keyval."graphviz.txt"; -$line=shell_exec('/usr/bin/dot -Tplain -y '.$grv); - - -//$grfilename=$keyval."graphviz.txt"; -//$cmd="/usr/bin/dot -Tplain -y $grfilename"; -//$line=system($cmd); - - -//shell_exec('/usr/bin/dot -Tpng -o /var/www/html/compbio/BNW/graphviz.png /var/www/html/compbio/BNW/graphviz.txt'); -$str_arrname=array(); -$str_arrname=explode("\n",$line); -$data=array(); -$ID_data=array(); -$i=0; -$ii=0; -foreach($str_arrname as $row) -{ - $i++; - if($i>1) - { - - $data=explode(" ",$row); - $j=0; - $k=0; - $flag=0; - foreach($data as $cell) - { - - $j++; - - $cell=trim($cell); - //echo $cell; - //echo ' '; - if($j==1 && $cell=="node") - { - $flag=1; - } - - if($j>1 && $j<5 && $flag==1) - { - //echo $cell; - //echo ' '; - if($j==2) - $ID_data[$ii][$k]=$cell; - else - $ID_data[$ii][$k]=round($cell/10*900); - // echo $ID_data[$ii][$k]; - //echo ' '; - - $k++; - } - } - - if($flag==1) - { - $ID_data[$ii][3]=$ID_data[$ii][1]+100; - $ID_data[$ii][4]=$ID_data[$ii][2]+150; - $ID_data[$ii][5]=$ID_data[$ii][1]+100; - $ID_data[$ii][6]=$ID_data[$ii][2]; - $ii++; - //echo "<br />"; - } - // echo "<br />"; - - } -} - -$nnode=$ii; -$edge_data=array(); - -$i=0; -$ii=0; - -foreach($str_arrname as $row) -{ - $i++; - if($i>1) - { - - $data=explode(" ",$row); - $j=0; - - $flag=0; - $number_of_point=0; - $index=0; - foreach($data as $cell) - { - $j++; - $cell=trim($cell); - - if($j==1 && $cell=="edge") - { - $flag=1; - } - - if($j==2 && $flag==1) - { - - for($k=0;$k<$nnode;$k++) - { - if($cell==$ID_data[$k][0]) - { - $edge_data[$ii][0]=$ID_data[$k][3]; - $edge_data[$ii][1]=$ID_data[$k][4]; - } - - } - - } - else if($j==3 && $flag==1) - { - for($k=0;$k<$nnode;$k++) - { - if($cell==$ID_data[$k][0]) - { - $edge_data[$ii][2]=$ID_data[$k][5]; - $edge_data[$ii][3]=$ID_data[$k][6]; - } - - } - - } - else if($j==4 && $flag==1) - { - $edge_data[$ii][4]=$cell; - $number_of_point=$cell*2; - $index=5; - } - else if($j>4 && $number_of_point>0 && $flag==1) - { - if(($j%2)!=0) - $edge_data[$ii][$index]=round($cell/10*900)+60;//+30+30; - else - $edge_data[$ii][$index]=round($cell/10*900)+48;//+18+30; - - $number_of_point--; - $index++; - } - - - - } - if($flag==1) - { - $ii++; - //echo "<br />"; - } - - } -} - - -$nedges=$ii; - -?> - -<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd"> -<html xmlns="http://www.w3.org/1999/xhtml"> -<head> -<meta http-equiv="content-type" content="text/html; charset=utf-8"/> -<script type="text/javascript" src="http://www.google.com/jsapi"></script> - <script type="text/javascript"> - google.load('visualization', '1', {packages: ['corechart']}); - </script> - - -<?php -$data_val=""; - -for($i=0;$i<$nnode;$i++) - { -////////////////////////////select node ////////////////////////////////////// - $name=$ID_data[$i][0]; - $fname="draw_".$name."()"; - $data_val.=$name; - for($j=0;$j<$node;$j++) - { - if($data_read[$j][0]==$name) - { - $s_i=$j; - break; - } - } - -/////////////////////////////////Display nodes////////////////////////////////////////////////////////// -?> - <script type="text/javascript"> - - -<?php - $node_type=$data_read[$s_i][1]; - if($node_type>1) //discrete node - { -?> - - - function <?php print($fname);?> { - // Create and populate the data table. - - var data = google.visualization.arrayToDataTable([ - ['<?php print($name);?>', ''], - <?php - $c_i=2; - - for($j=0;$j<$node_type-1;$j++) - { - $val1=trim($data_read[$s_i][$c_i]); - - - $c_i++; - $val2=trim($data_read[$s_i][$c_i]); - $c_i++; - $data_val.="\t".$val2; - - ?> - ['<?php print($val1);?>', <?php print($val2);?>], - - <?php - } - if($j==$node_type-1) - { - $val1=trim($data_read[$s_i][$c_i]); - - - $c_i++; - $val2=trim($data_read[$s_i][$c_i]); - $c_i++; - $data_val.="\t".$val2."\n"; - ?> - ['<?php print($val1);?>', <?php print($val2);?>] -<?php - } -?> - ]); - - // Create and draw the visualization. - - var cnode="<?php print($name); ?>"; - var keyv="<?php print($keyval);?>"; - var chart = new google.visualization.ColumnChart(document.getElementById('<?php print($name);?>')); - function selectHandler() { - var selectedItem = chart.getSelection()[0]; - if (selectedItem) { - var topping = data.getValue(selectedItem.row, 0); - - var s = window.prompt('Selected evidence ' + topping + ' for ' + cnode + '. Enter new evidence ', topping ); - if (input_check(s)) - { - window.location.href = "add_inv_example.php?name=" + cnode + "&evidence=" + s + "&My_key=" + keyv; - } - else - { - window.location.href = "input_error_no_menu.php"; - } - } - } - chart.draw(data, - {title:"<?php print($name);?>", titleTextStyle: {fontSize: <?php print($font);?>}, - width:<?php print($width);?>, height:<?php print($height);?>, - hAxis: {textStyle: {fontSize:11}}, - vAxis: {minValue: 0, maxValue: 1, textStyle: {fontSize: 9}}, legend: {position: 'none'}, - backgroundColor: {stroke: 'black', strokeWidth: 5}} - ); - google.visualization.events.addListener(chart, 'select', selectHandler); - - } -<?php - } - else //continuous node - { -?> - function <?php print($fname);?> { - // Create and populate the data table. - var data = google.visualization.arrayToDataTable([ - [{label:'<?php print($name);?>', type: 'number'},{label: ''}], - <?php - $c_i=2; - for($j=0;$j<100;$j++) - { - $val1=trim($data_read[$s_i][$c_i]); - - $c_i++; - $val2=trim($data_read[$s_i][$c_i]); - $c_i++; - $data_val.="\t".$val2; - ?> - ['<?php print($val1);?>', <?php print($val2);?>], - - <?php - } - if($j==100) - { - $val1=trim($data_read[$s_i][$c_i]); - - $c_i++; - $val2=trim($data_read[$s_i][$c_i]); - $c_i++; - $data_val.="\t".$val2."\n"; - ?> - ['<?php print($val1);?>', <?php print($val2);?>] -<?php - } -?> - ]); - - // Create and draw the visualization. - var cnode="<?php print($name); ?>"; - var keyv="<?php print($keyval);?>"; - - var chart = new google.visualization.LineChart(document.getElementById('<?php print($name);?>')); - - function selectHandler() { - var selectedItem = chart.getSelection()[0]; - if (selectedItem) { - - var topping = data.getValue(selectedItem.row, 0); - var s = window.prompt('Selected evidence ' + topping + ' for ' + cnode + '. Enter new evidence ', topping ); - if (input_check(s)) - { - window.location.href = "add_inv_example.php?name=" + cnode + "&evidence=" + s + "&My_key=" + keyv; - } - else - { - window.location.href = "input_error_no_menu.php"; - } - } - } - chart.draw(data, {curveType: "function", - title:"<?php print($name);?>", titleTextStyle: {fontSize: <?php print($font);?>}, - legend: {position: 'none'}, - width:<?php print($width);?>, height:<?php print($height);?>, - hAxis: {gridlines: {count: 4}, textStyle: {fontSize: 9}, viewWindowMode: 'maximized'}, - vAxis: {maxValue: 0.5, minValue: 0,viewWindow: {min:0}, gridlines: {count:5}, textStyle: {fontSize: 9}}, - chartArea:{left:30,top:25,right:8,bottom:25}, - backgroundColor: {stroke: 'black', strokeWidth: 5}} - ); - google.visualization.events.addListener(chart, 'select', selectHandler); - } - -<?php - } -?> -</script> -<?php -///////////////////////////end of display nodes//////////////////////////////////////////////// -} - - -///////////////////////////////////write data to file/////////////////////////////////////////////////////////// - - -?> - - - -<script type="text/javascript"> -function canvas_arrow(context, fromx, fromy, tox, toy){ - var headlen = 15; - var dx = tox-fromx; - var dy = toy-fromy; - var angle = Math.atan2(dy,dx); - context.moveTo(fromx,fromy); - context.lineTo(tox,toy); - context.lineTo(tox-headlen*Math.cos(angle-Math.PI/6),toy-headlen*Math.sin(angle-Math.PI/6)); - context.moveTo(tox,toy); - context.lineTo(tox-headlen*Math.cos(angle+Math.PI/6),toy-headlen*Math.sin(angle+Math.PI/6)); -} -</script> - -<script type="text/javascript"> -function canvas_arrow_head(context, fromx, fromy, tox, toy){ - var headlen = 15; - var dx = tox-fromx; - var dy = toy-fromy; - var angle = Math.atan2(dy,dx); - context.moveTo(tox,toy); - context.lineTo(tox-headlen*Math.cos(angle-Math.PI/6),toy-headlen*Math.sin(angle-Math.PI/6)); - context.moveTo(tox,toy); - context.lineTo(tox-headlen*Math.cos(angle+Math.PI/6),toy-headlen*Math.sin(angle+Math.PI/6)); -} -</script> - - -</head> - -<body> -<canvas id="test" width="3000" height="3000" style="position:absolute"> -<script> -function canvas_arrow_draw(n, polypts,context){ - -//Create jsGraphics object -var headlen = 10; -/* -var hexno=new String; -arr=new Array("0","1","2","3","4","5","6","7","8","9","a","b","c","d","e","f"); -var n1=Math.round(Math.random()*15); -var n2=Math.round(Math.random()*15); -var n3=Math.round(Math.random()*15); -var n4=Math.round(Math.random()*15); -var n5=Math.round(Math.random()*15); -var n6=Math.round(Math.random()*15); -hexno="#"+arr[n1]+""+arr[n2]+""+arr[n3]+""+arr[n4]+""+arr[n5]+""+arr[n6]; -*/ -hexno="black"; -var polypoints = new Array(); -var n2=n*2; - - -var sx=polypts[0]; -var sy=polypts[1]; - -var sx1=polypts[n2-4]; -var sy1=polypts[n2-3]; -var ex1=polypts[n2-2]; -var ey1=polypts[n2-1]; - -context.beginPath(); -canvas_arrow_head(context,sx1,sy1,ex1,ey1); - -context.moveTo(polypts[0],polypts[1]); -nm=n%3; -ni=(n-nm)/3; - -for(i=0;i<ni;i++) -{ - i11=i*6+2; - i12=i*6+3; - i21=i*6+4; - i22=i*6+5; - i31=i*6+6; - i32=i*6+7; - - context.bezierCurveTo(polypts[i11],polypts[i12],polypts[i21],polypts[i22],polypts[i31],polypts[i32]); - context.moveTo(polypts[i31],polypts[i32]); - - // polypoints[i] = new jxPoint(polypts[i1], polypts[i2]); -} - - -if(nm==2) -{ - context.moveTo(polypts[i21],polypts[i22]); - context.bezierCurveTo(polypts[i31],polypts[i32],sx1,sy1,ex1,ey1); - context.moveTo(ex1,ey1); - -} - - context.strokeStyle = hexno; - context.stroke(); - -} - - -var canvas=document.getElementById("test"); -var context = canvas.getContext("2d"); -context.lineWidth = 3; - -<?php -for($i=0;$i<$nedges;$i++) -{ - - $n=$edge_data[$i][4]; - $n2=$n*2; - -?> -var polypoints = new Array(); -var j=0; -var n="<?php print($n);?>"; -<?php -for($j=0;$j<$n2;$j++) -{ -$inx=$j+5; -$data=$edge_data[$i][$inx]; - -?> - polypoints[j] = "<?php print($data);?>"; - - j++; -<?php -} -?> -canvas_arrow_draw(n,polypoints,context); -<?php -} -?> - - - -</script> -</canvas> - - -<?php -for($i=0;$i<$nnode;$i++) -{ - $x=$ID_data[$i][1]-8; $y=$ID_data[$i][2]-20; - - $name=$ID_data[$i][0]; -?> - -<script type="text/javascript"> - google.setOnLoadCallback(draw_<?php print($name)?>); -</script> -<div id="<?php print($name)?>" style="left: <?php print($x)?>px; top: <?php print($y)?>px; width:<?php print($width);?>; height:<?php print($height);?>; position: absolute"></div> - -<?php -} -?> - - -</body> - - - -</html> - - |