diff options
Diffstat (limited to 'sourcecodes/layout_cyto.php')
| -rw-r--r-- | sourcecodes/layout_cyto.php | 40 |
1 files changed, 20 insertions, 20 deletions
diff --git a/sourcecodes/layout_cyto.php b/sourcecodes/layout_cyto.php index 85d8835a..b939f79a 100644 --- a/sourcecodes/layout_cyto.php +++ b/sourcecodes/layout_cyto.php @@ -2,6 +2,11 @@ <head> +<!-- +<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/cytoscape-panzoom/2.5.3/cytoscape.js-panzoom.css"> +<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.0.3/css/font-awesome.css"> +--> + <link rel="stylesheet" href="./scripts/cytoscape.js-panzoom.css"> <link rel="stylesheet" href="./scripts/font-awesome.css"> @@ -12,17 +17,15 @@ include("header_new.inc"); include("input_validate.php"); $keyval=valid_keyval($_GET["My_key"]); -//$dir="./data/"; +$dir="./data/"; //In this case, $dir is used by the json command so it is interpreted and turned into /tmp/bnw/ automatically //$dir="/tmp/bnw/"; -$dir="/var/lib/genenet/bnw/"; -$input_json=$keyval."network.json"; +$input_json=$dir.$keyval."network.json"; $output_png=$keyval."modified_network.png"; //In this section, $dir is used by php, so we need to use /tmp/bnw -//$thrfile="/tmp/bnw/".$keyval."thr.txt"; -$thrfile="/var/lib/genenet/bnw/".$keyval."thr.txt"; +$thrfile="/tmp/bnw/".$keyval."thr.txt"; if(file_exists($thrfile)) { $thr=file_get_contents("$thrfile"); @@ -33,6 +36,14 @@ if(file_exists($thrfile)) ?> +<!-- +<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.1.0/jquery.min.js"></script> +<script src="https://cdnjs.cloudflare.com/ajax/libs/cytoscape/3.7.1/cytoscape.min.js"></script> +<script src="https://cdnjs.cloudflare.com/ajax/libs/cytoscape-panzoom/2.5.3/cytoscape-panzoom.js"></script> +<script src="https://unpkg.com/dagre@0.7.4/dist/dagre.js"></script> +<script src="https://cdn.jsdelivr.net/npm/cytoscape-dagre@2.2.2/cytoscape-dagre.min.js"></script> +<script src="https://cdnjs.cloudflare.com/ajax/libs/lodash.js/4.17.10/lodash.js"></script> +--> <script src="./scripts/jquery.min.js"></script> <script src="./scripts/cytoscape.min.js"></script> <script src="./scripts/dagre.js"></script> @@ -76,11 +87,6 @@ display: none; </style> -<?php -$json_text = json_encode(file("file://".$dir.$input_json)); -?> - - <script> // var default_layout = { name: 'breadthfirst', @@ -97,16 +103,11 @@ var default_layout = { name: 'dagre', padding: 30, spacingFactor: 1.25 } - - //$.getJSON("<?php print($input_json);?>",function (data) { - $.getJSON("./data/LRlnetwork.json",function (dumm) { + $.getJSON("<?php print($input_json);?>",function (data) { + //$.getJSON("./data/cwHnetwork.json",function (data) { // console.log(data); // document.addEventListener('DOMContentLoaded', function(){ - var data1 = <?php echo $json_text?>; -// console.log(data1); - var data2 = data1.join(""); - var data = JSON.parse(data2); var cy = window.cy = cytoscape({ container: document.getElementById('cy'), elements: data, @@ -367,8 +368,7 @@ $('#pos_slide').change(function (e) { <li><a id="addEdge" href="#">Add edge between selected nodes</a></li> <li><a id="deleteEdge" href="#">Remove selected edges</a></li> <?php - //$filename1="/tmp/bnw/".$keyval."structure_input_temp.txt"; - $filename1="/var/lib/genenet/bnw/".$keyval."structure_input_temp.txt"; + $filename1="/tmp/bnw/".$keyval."structure_input_temp.txt"; if(file_exists($filename1)) {?> <li><a id="weightFilter" href="#">Filter edges by weight:</a> @@ -399,4 +399,4 @@ if(file_exists($filename1)) </body> -</html> +</html> \ No newline at end of file |