diff options
Diffstat (limited to 'sourcecodes/graphviz_structure.php')
| -rw-r--r-- | sourcecodes/graphviz_structure.php | 31 |
1 files changed, 13 insertions, 18 deletions
diff --git a/sourcecodes/graphviz_structure.php b/sourcecodes/graphviz_structure.php index c708a25c..0708971f 100644 --- a/sourcecodes/graphviz_structure.php +++ b/sourcecodes/graphviz_structure.php @@ -23,8 +23,12 @@ $keyval=valid_keyval($_GET["My_key"]); /////////////////////////////////structure matrix////////////////////////////////////////////////////////// -$matfile="./data/".$keyval."structure_input.txt"; -$fout=fopen("./data/".$keyval."graphviz.txt","w"); +//$matfile="./data/".$keyval."structure_input.txt"; +//$fout=fopen("./data/".$keyval."graphviz.txt","w"); +//$matfile="/tmp/bnw/".$keyval."structure_input.txt"; +//$fout=fopen("/tmp/bnw/".$keyval."graphviz.txt","w"); +$matfile="/var/lib/genenet/bnw/".$keyval."structure_input.txt"; +$fout=fopen("/var/lib/genenet/bnw/".$keyval."graphviz.txt","w"); $matrix1=file_get_contents("$matfile"); $str_arrmat=array(); @@ -36,13 +40,15 @@ $dataname=array(); $dataname=explode("\t",$str_arrmat[0]); $n=count($dataname); -$initialstring="digraph G {\n"."size=\"10,10\"; ratio = fill;\n"."node [shape=square,width=1.5];\n"; +$initialstring="digraph G {\n"."size=\"6,8\";\n"."node [shape=square,width=1.5];\n"; $endstring="}"; fwrite($fout,"$initialstring"); //fwrite($fouttemp,"$initialstring_temp"); -$g_file_name="./data/".$keyval."grviz_name_file.txt"; +//$g_file_name="./data/".$keyval."grviz_name_file.txt"; +//$g_file_name="/tmp/bnw/".$keyval."grviz_name_file.txt"; +$g_file_name="/var/lib/genenet/bnw/".$keyval."grviz_name_file.txt"; $grviz_name_file=fopen($g_file_name,"w"); for($i=0;$i<$n;$i++) @@ -75,23 +81,12 @@ for($i=1;$i<=$n;$i++) } fwrite($fout,"$endstring"); -//fwrite($fouttemp,"$endstring"); - -//shell_exec('/usr/bin/dot -Tpng -o /var/www/html/compbio/BNW/graphviz.jpg /var/www/html/compbio/BNW/graphviztemp.txt'); - -$file1="./data/".$keyval."run_initialstructure.sh"; -$initiallines=file_get_contents("./data/temp_shell_file_initial_structure"); -$all_lines="$initiallines"."$keyval\nfi\nexit"; -$fp = fopen($file1,"w"); -fwrite($fp, "$all_lines\n"); -fclose($fp); -//prepare and execute shell script for matlab with a write lock -//$cmd="./runmat.sh $keyval"; -//system($cmd); + shell_exec('./run_scripts/run_octave '.$keyval); + ?> <script> -window.open("layout.php?My_key=<?php print($keyval);?>",'_self',false); +window.open("layout_svg_no.php?My_key=<?php print($keyval);?>",'_self',false); </script> |