diff options
Diffstat (limited to 'sourcecodes/cross_valid.php')
| -rw-r--r-- | sourcecodes/cross_valid.php | 106 |
1 files changed, 75 insertions, 31 deletions
diff --git a/sourcecodes/cross_valid.php b/sourcecodes/cross_valid.php index c3c8bd55..8adbcdfe 100644 --- a/sourcecodes/cross_valid.php +++ b/sourcecodes/cross_valid.php @@ -1,11 +1,19 @@ +<head> +<meta http-equiv='cache-control' content='no-cache'> +<meta http-equiv='expires' content='0'> +<meta http-equiv='pragma' content='no-cache'> +<script src="./scripts/d3.v4.min.js"></script> +<script src="./scripts/create_table.js"></script> <?php include("header_new.inc"); +include("header_batchsearch.inc"); include("input_validate.php"); $keyval=$_GET["My_key"]; if($keyval!='') { $keyval = valid_keyval($keyval); } ?> +</head> <?php $varName = ""; @@ -38,12 +46,18 @@ function test_input($data) { } ?> +<?php +$varName_file = "/var/lib/genenet/bnw/".$keyval."name.txt"; +$varName_line = file_get_contents($varName_file); +$varNamesArr = explode("\t",$varName_line); +?> + + + <!-- Site navigation menu --> <ul class="navbar2"> - <li><p>Network ID:<br><?php print($keyval);?></p></li> -</ul> -<ul class="navbar"> + <li class="noHover"><p>Network ID:<br><?php print($keyval);?></p></li> <li><a href="javascript:void(0);" NAME="Network" title="Network" onClick=window.open("layout.php?My_key=<?php print($keyval);?>","_self");>Return to network</a> <li><a href="javascript:void(0);" @@ -52,14 +66,22 @@ function test_input($data) { <li><a href="home.php">Home</a> </ul> +<body> <!-- Main content --> <div id="outer"> <?php - $filename1="./data/".$keyval."looCV.txt"; - $filename2="./data/".$keyval."looCV_temp.txt"; -if(file_exists($filename2)) + // $filename1="./data/".$keyval."looCV.txt"; + // $filename2="./data/".$keyval."looCV_temp.txt"; +// $dir="/tmp/bnw/"; +$dir="/var/lib/genenet/bnw/"; +$filename1=$keyval."looCV.txt"; +$filename2=$keyval."looCV_temp.txt"; + $plotly_file=$keyval."loo_plotly.html"; +// $plotly_file_local = "./data/".$keyval."loo_plotly.html"; +// $pred_file_local = "./data/".$keyval."looCV.txt"; +if(file_exists($dir.$filename2)) {?> <br> <h2> Leave-one-out cross-validation results are being calculated</h2> @@ -68,30 +90,48 @@ if(file_exists($filename2)) <br> <?php } - else if(file_exists($filename1)) - {?> - <h2> <a href=<?php $d="./data/".$keyval."looCV.txt"; print($d);?>>Download cross-validation results</a></h2> -<?php - $plotly_file="./data/".$keyval."loo_plotly.html"; - if(file_exists($plotly_file)) - {?> + else if(file_exists($dir.$filename1)) + { + $file_data = file_get_contents($dir.$plotly_file); + + ?> <div> - <object type="text/html" data=<?php print($plotly_file);?> width="800" height="500" > + <object width="800" height="500" data=<?=$file_data?> </object> </div> - <?php - }?> +<?php +$table_text = json_encode(file("file://".$dir.$filename1)); +?> + <div class="d3_table" id="table_div1"> + <script type="text/javascript"> + d3.text("", function(error,raw) { + var dsv=d3.dsvFormat("\t") + var data1 = <?php echo $table_text;?>; + var data2 = data1.join(""); + var data=dsv.parse(data2) + var caption_text=data.pop() + if (error) throw error; + tabulate_caption("#table_div1",data,caption_text.CaseRow); + }); +</script> +</div> <br> -<h3>Perform leave-one-out cross-validation of another network variable<br></h3> -<p align="justify"> - Enter the name of another variable below to validate predictions of that variable. + <a class=button2 href=<?php print("reroute.php?".$filename1);?>>Download cross-validation results</a> <br> +<br> +<h3>Perform leave-one-out cross-validation of another network variable<br></h3> <p><span class="error"></span></p> -<FORM METHOD="post" ACTION="<?php echo htmlspecialchars($_SERVER["PHP_SELF"]);?>"> - Variable Name:<INPUT TYPE="text" name="varName" value="<?php echo $varName;?>" style="padding: 2px 5px; border: 2px solid; border-color: black black black black; font-family: Georgia, ..., serif; font-size: 18px; -display: block; height: 30px; width: 300px;"><span class="error"> <?php if($varNameErr!="1") {echo $varNameErr;};?></span> +<FORM METHOD="post" id=form ACTION="<?php $location = htmlspecialchars($_SERVER["PHP_SELF"]); echo ''.$location.'#form';?>"> +<p style='font-size:18px'>Select variable name:</p> +<select style='font-size:18px' Name="varName"> + <?php foreach($varNamesArr as $entry){ + echo "<option value='".$entry."'>$entry</option>"; + }?> +</select> <input type='hidden' name='My_key' value='<?php print($keyval)?>'> -<br><input type="submit" name="submit" value="Submit" style="display: block; height: 30px; width:100px; font-family: Georgia, ..., serif; font-size: 16px;"> +<input class=button2 type="submit" name="submit" value="Submit" style="font-size:18px"> +<br><br> +</FORM> </FORM> </p> <br> @@ -99,15 +139,21 @@ display: block; height: 30px; width: 300px;"><span class="error"> <?php if($varN } else { ?> <h2>Perform leave-one-out cross-validation of network</h2> -<p align="justify"> - To perform cross-validation, enter the name of the variable that you want to test the predictions of below. + +<p align="justify" style='font-size:18px'> + Select the variable that you want to examine the predictions of below. +<br> <br> <p><span class="error"></span></p> <FORM METHOD="post" ACTION="<?php echo htmlspecialchars($_SERVER["PHP_SELF"]);?>"> - Variable Name:<INPUT TYPE="text" name="varName" value="<?php echo $varName;?>" style="padding: 2px 5px; border: 2px solid; border-color: black black black black; font-family: Georgia, ..., serif; font-size: 18px; -display: block; height: 30px; width: 300px;"><span class="error"> <?php if($varNameErr!="1") {echo $varNameErr;};?></span> +<p style='font-size:18px'> Select variable name:</p><br> +<select style='font-size:18px' Name="varName"> + <?php foreach($varNamesArr as $entry){ + echo "<option value='".$entry."'>$entry</option>"; + }?> +</select> <input type='hidden' name='My_key' value='<?php print($keyval)?>'> -<br><input type="submit" name="submit" value="Submit" style="display: block; height: 30px; width:100px; font-family: Georgia, ..., serif; font-size: 16px;"> +<input class=button2 type="submit" name="submit" value="Submit" style="font-size:18px"> </FORM> </p> <br> @@ -123,9 +169,7 @@ if($varNameErr=="1") $pred_link='cv_predictions.php?My_key='.$keyval; sleep(1); echo "<br>"; - echo "Calculation submitted"; - echo "<br>"; - echo "<a href=$pred_link>Click to return to cross-validation and predictions menu</a>"; + echo "<a class=button3 href=$pred_link>Calculation submitted. Click here to return to cross-validation and predictions menu.</a><br><br>"; } ?> |