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Diffstat (limited to 'sourcecodes/create_tiers_gom_part1.php')
| -rw-r--r-- | sourcecodes/create_tiers_gom_part1.php | 196 |
1 files changed, 196 insertions, 0 deletions
diff --git a/sourcecodes/create_tiers_gom_part1.php b/sourcecodes/create_tiers_gom_part1.php new file mode 100644 index 00000000..f2125367 --- /dev/null +++ b/sourcecodes/create_tiers_gom_part1.php @@ -0,0 +1,196 @@ +<?php + +///////This code will allow users to group variables in tier. getcombineDescription() function combined all data and take you to "tier_description_processing_gom.php" for preparation of ban and whitelist ////////// + +include("header_new.inc"); +include("runtime_check.php"); +include("input_validate.php"); +$keyval=$_GET["My_key"]; + +//$dir="./data/"; +//$dir="/tmp/bnw/"; +$dir="/var/lib/genenet/bnw/"; + +$type_n=array(); + +//Get number of tier data and key value for changes in number of tier + +if(isset($_POST["nm_tier"])) +{ + $type_n=explode("|",$_POST["nm_tier"]); +} +else if(isset($_POST["nm_parent"])) +{ + $type_n=explode("|",$_POST["nm_parent"]); +} +else if(isset($_POST["nm_k"])) +{ + $type_n=explode("|",$_POST["nm_k"]); +} +else if(isset($_POST["nm_thr"])) +{ + $type_n=explode("|",$_POST["nm_thr"]); +} + +$parent_number=trim($type_n[0]); +$k_number=trim($type_n[1]); +$tier_number=trim($type_n[2]); +$structure_thr=trim($type_n[3]); + + +if($keyval=="") + $keyval=$type_n[4]; + + +if($parent_number=="") +{ + $parent_number=4; +} + +if($k_number=="") +{ + $k_number=1; +} + +if($tier_number=="") +{ + $tier_number=3; +} +if($structure_thr=="") +{ + $structure_thr=0.5; +} + + + +$nf=$dir.$keyval."nnode.txt"; +$node=trim(file_get_contents("$nf")); +$maxplist=$node-1; + +//print default number of parents +$pfile=$dir.$keyval."parent.txt"; +$parentf=fopen($pfile,"w"); +fwrite($parentf,"$parent_number\n"); + +//print default number of k for model averaging +$kfile=$dir.$keyval."k.txt"; +$kf=fopen($kfile,"w"); +fwrite($kf,"$k_number\n"); + +//print model averaging threshold +$thrfile=$dir.$keyval."thr.txt"; +$kf=fopen($thrfile,"w"); +fwrite($kf,"$structure_thr\n"); + +//////////////////Check execution time////////////////////////////////////////////// +$keyval=valid_keyval($keyval); +$runtime=exe_time($keyval,$parent_number,$k_number); + +//print("Runtime is $runtime"); + +?> +<!-- Site navigation menu --> +<ul class="navbar2"> + <li><a href="input_check.php?My_key=<?php print($keyval);?>" target="_blank";>View uploaded variables and data</a> + <li><a href="help.php#constraint_interface" target="_blank">About this page</a> + <li><a href="help.php" target="_blank">Help</a> + <li><a href="home.php">Home</a> +</ul> + +<div id="outernew_sci"> +<br> +<p><h3>Set structure learning settings:<br></h3> +</p> +<table align="center"> +<tr> +<td align="left"> +Maximum number of parents for any node: +</td> +<td align="left"> + <form method="post" action="create_tiers_gom_part1.php" name="form"> + <SELECT style='font-size:16px' NAME="nm_parent" onchange="form.submit();"> + <?php if($node<=5) + { + for($i=1;$i<=4;$i++) + { + ?> + <option value=<?php $combined=$i."|".$k_number."|".$tier_number."|".$structure_thr."|".$keyval; print($combined)?> <?php if($parent_number == $i) {print "selected";}?>><?php print($i)?></option> + <?php + } + } + else if($node<=10) + { + for($i=1;$i<$node;$i++) + { + ?> + <option value=<?php $combined=$i."|".$k_number."|".$tier_number."|".$structure_thr."|".$keyval; print($combined)?> <?php if($parent_number == $i) {print "selected";}?>><?php print($i)?></option> + <?php + } + } + else + { + for($i=1;$i<=9;$i++) + { + + ?> + <option value=<?php $combined=$i."|".$k_number."|".$tier_number."|".$structure_thr."|".$keyval; print($combined)?> <?php if($parent_number == $i) {print "selected";}?>><?php print($i)?></option> + <?php + } + ?> + <option value=<?php $combined=$maxplist."|".$k_number."|".$tier_number."|".$structure_thr."|".$keyval; print($combined)?> <?php if($parent_number == $maxplist) {print "selected";}?>>All</option> + <?php + + } + + ?> + + </SELECT> + </form> +</td> +</tr> +<tr> +<td align="left"> +Number of networks to include in model averaging: +</td> +<td align="left"> + <form method="post" action="create_tiers_gom_part1.php" name="form"> + <SELECT style='font-size:16px' NAME="nm_k" onchange="form.submit();"> + <option selected value=<?php $combined=$parent_number."|"."1"."|".$tier_number."|".$structure_thr."|".$keyval; print($combined)?> <?php if($k_number == 1) {print "selected";}?>><?php print("1")?></option> + <option value=<?php $combined=$parent_number."|"."10"."|".$tier_number."|".$structure_thr."|".$keyval; print($combined)?> <?php if($k_number == 10) {print "selected";}?>><?php print("10")?></option> + <option value=<?php $combined=$parent_number."|"."50"."|".$tier_number."|".$structure_thr."|".$keyval; print($combined)?> <?php if($k_number == 50) {print "selected";}?>><?php print("50")?></option> + <option value=<?php $combined=$parent_number."|"."100"."|".$tier_number."|".$structure_thr."|".$keyval; print($combined)?> <?php if($k_number == 100) {print "selected";}?>><?php print("100")?></option> + <option value=<?php $combined=$parent_number."|"."500"."|".$tier_number."|".$structure_thr."|".$keyval; print($combined)?> <?php if($k_number == 500) {print "selected";}?>><?php print("500")?></option> + <option value=<?php $combined=$parent_number."|"."1000"."|".$tier_number."|".$structure_thr."|".$keyval; print($combined)?> <?php if($k_number == 1000) {print "selected";}?>><?php print("1000")?></option> + </SELECT> + </form> +</td> +</tr> +<tr> +<td align="left"> +Model averaging edge selection threshold: +</td> +<td align="left"> + <form method="post" action="create_tiers_gom_part1.php" name="form"> + <SELECT style='font-size:16px' NAME="nm_thr" onchange="form.submit();"> + <option value=<?php $combined=$parent_number."|".$k_number."|".$tier_number."|"."0.5"."|".$keyval; print($combined)?> <?php if($structure_thr == 0.5) {print "selected";}?>>0.5</option> + <option value=<?php $combined=$parent_number."|".$k_number."|".$tier_number."|"."0.6"."|".$keyval; print($combined)?> <?php if($structure_thr == 0.6) {print "selected";}?>>0.6</option> + <option value=<?php $combined=$parent_number."|".$k_number."|".$tier_number."|"."0.7"."|".$keyval; print($combined)?> <?php if($structure_thr == 0.7) {print "selected";}?>>0.7</option> + <option value=<?php $combined=$parent_number."|".$k_number."|".$tier_number."|"."0.8"."|".$keyval; print($combined)?> <?php if($structure_thr == 0.8) {print "selected";}?>>0.8</option> + <option value=<?php $combined=$parent_number."|".$k_number."|".$tier_number."|"."0.9"."|".$keyval; print($combined)?> <?php if($structure_thr == 0.9) {print "selected";}?>>0.9</option> + <option value=<?php $combined=$parent_number."|".$k_number."|".$tier_number."|"."1.0"."|".$keyval; print($combined)?> <?php if($structure_thr == 1.0) {print "selected";}?>>1.0</option> + + </SELECT> + </form> +</td> +</tr> +</table> +</br> + +<p><h3><?php +print("Estimated run time for the current parameters: $runtime seconds"); +?> +<br></h3> +</p> +<br> +<a class=button3 href="create_tiers_gom_part2.php?My_key=<?php print($keyval);?>">Continue to assign variables to tiers</a> +<br> |