diff options
Diffstat (limited to 'sourcecodes/bn_file_load_gom.php')
| -rw-r--r-- | sourcecodes/bn_file_load_gom.php | 154 |
1 files changed, 90 insertions, 64 deletions
diff --git a/sourcecodes/bn_file_load_gom.php b/sourcecodes/bn_file_load_gom.php index 3f3ef195..d2480cd4 100644 --- a/sourcecodes/bn_file_load_gom.php +++ b/sourcecodes/bn_file_load_gom.php @@ -1,15 +1,19 @@ +<meta charset="utf-8"> +<script src="./scripts/d3.v4.min.js"></script> +<script src="./scripts/create_table.js"></script> + <?php //Going to modify this so it just writes the uploaded data to a file. //Standardization and determining other factors will be performed in // a Matlab/Octave script. - +//<link rel="stylesheet" href="./scripts/table.css" type="text/css"> include("header_new.inc"); include("header_batchsearch.inc"); include("runtime_check.php"); include("input_validate.php"); $searchID=""; $UploadValue="NO"; -$TextFile=$HTTP_POST_FILES["MyFile"]["name"]; +$TextFile=$_FILES["MyFile"]["name"]; /////////////Generate a random key///////////////////// @@ -29,14 +33,18 @@ if($_POST["My_key"]!="") $keyval=valid_keyval($keyval); $sid=$keyval."continuous_input"; -$dir="./data/"; +//$dir="./data/"; +//$dir="/tmp/bnw/"; +$dir="/var/lib/genenet/bnw/"; +//$input_table_file="./data/".$keyval."input_table.txt"; +$input_table_file=$dir.$keyval."input_table.txt"; $TextinFile=$dir.$sid."_orig.txt"; -if(isset($HTTP_POST_VARS["searchkey"])) +if(isset($_POST["searchkey"])) { - $searchID=$HTTP_POST_VARS["searchkey"]; + $searchID=$_POST["searchkey"]; } @@ -45,8 +53,10 @@ if($searchID=="") ?> <!-- Site navigation menu --> -<ul class="navbar"> +<ul class="navbar2"> + <li><a href="sample_input.php" target="_blank">View sample input file</a> <li><a href="help.php#file_format" target="_blank">Data formatting guidelines</a> + <li><a href="about_this_page.php#file_upload" target="_blank">About this page</a> <li><a href="help.php" target="_blank">Help</a> <li><a href="home.php">Home</a> </ul> @@ -54,15 +64,15 @@ if($searchID=="") } -if(isset($HTTP_POST_VARS["MyUpload"])) +if(isset($_POST["MyUpload"])) { - $UploadValue=$HTTP_POST_VARS["MyUpload"]; + $UploadValue=$_POST["MyUpload"]; if ($UploadValue=="YES") { if($TextFile!="") { // $TextFile = valid_input($TextFile); - $sta=move_uploaded_file($HTTP_POST_FILES['MyFile']['tmp_name'],$TextinFile); + $sta=move_uploaded_file($_FILES['MyFile']['tmp_name'],$TextinFile); if(!$sta) { echo "<script type='text/javascript'> window.alert ('Sorry, error uploading $TextFile.')</script>"; @@ -87,57 +97,45 @@ if(isset($HTTP_POST_VARS["MyUpload"])) ?> <div id="outernew"> -<h2><font color=#33339f>Upload data file for structure learning search</font></h2> -<FORM name="key_search" enctype="multipart/form-data" ACTION="bn_file_load_gom.php" METHOD=POST> - -<table align="left" cellspacing="3" cellpadding="1" border="0" width="60%"> -<tr> -<td> -<INPUT style="background-color:#FFFFFF;color:#0000FF" type="file" name="MyFile" size=45 > -<INPUT TYPE="submit" value=" Upload " onclick="return Upload();"> + <h3>Upload data file for structure learning search:</h3> +<br> +<FORM name="key_search" id="in_form" enctype="multipart/form-data" ACTION="bn_file_load_gom.php" METHOD=POST> + +<INPUT style="background-color:#FFFFFF;" type="file" name="MyFile" id="MyFile_id" class="inputfile" onchange="upload_submit()" > +<label for="MyFile_id">Choose a file. . .</label> <INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> > <INPUT TYPE="hidden" name="MyUpload" value="NO"> -</td> -</tr> -<tr> -<td align="left"><font color=#33339f><br>Content of uploaded data file:</font><br> - <textarea name="searchkey" rows="8" cols="100"><?PHP print($searchID)?> </textarea> -</td> -</tr> -<tr> -<td> -<INPUT TYPE="submit" value=" Load example data of immune responses to infection with Chlamydia psittaci " onclick="return demochl();">    -<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> > -</td> -</tr> -<tr> -<td> -<INPUT TYPE="submit" value=" Load example data of a synthetic genetic network with 2 genotypes and 6 traits " onclick="return demo8nodes();">    -<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> > -</td> -</tr> -<tr> -<td> -<INPUT TYPE="submit" value=" Load example data of immune-related gene in the spleens of BXD mice " onclick="return demospnl();">    +<textarea name="searchkey" style="display:none;"><?PHP print($searchID)?> </textarea> +<br> +<br> +<br> +<h3>Or load one of the example data sets below:</h3><br> +<INPUT TYPE="submit" class=button2 value=" Load example data of immune responses to infection with Chlamydia psittaci " onclick="return demochl();"> <INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> > -</td> -</tr> -<tr> -<td> -<INPUT TYPE="submit" value=" Load the ksl dataset from deal " onclick="return demoksl();">    +<br> +<INPUT TYPE="submit" class=button2 value=" Load example data of a synthetic genetic network with 2 genotypes and 6 traits " onclick="return demo8nodes();"> +<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?>> +<br> +<INPUT TYPE="submit" class=button2 value=" Load example data of immune-related gene in the spleens of BXD mice " onclick="return demospnl();"> +<INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?>> +<br> +<INPUT TYPE="submit" class=button2 value=" Load the ksl dataset from deal " onclick="return demoksl();">    <INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> > -</td> -</tr> -<tr> -<td> -<INPUT TYPE="submit" value=" Load the rat dataset from deal " onclick="return demorat();">    +<br> +<INPUT TYPE="submit" class=button2 value=" Load the rat dataset from deal " onclick="return demorat();">    <INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> > -</td> -</tr> -</table> +<br> </FORM> </div> +<script> + function upload_submit() { + Upload(); + document.getElementById("in_form").submit(); + } +</script> + + <?php if($searchID!="") @@ -154,22 +152,38 @@ if($searchID!="") $runtime=exe_time($keyval,$parent_number,$k_number); ?> <ul class="navbar2"> - <li><a href="executionprogress.php?My_key=<?php print($keyval);?>">Perform Bayesian network modeling using default settings</a> - <li><a href="create_tiers_gom.php?My_key=<?php print($keyval);?>">Go to structure learning settings and the BNW structural constraint interface</a> - <li><a href="remove_variables.php?My_key=<?php print($keyval);?>">Remove variables from data set</a> - <li><a href="javascript:void(0);" -NAME="InputCheck" title="InputCheck" - onClick=window.open("input_check.php?My_key=<?php print($keyval);?>","Rat//ting","width=950,height=270,0,status=0,");>View uploaded variables and data</a> -</ul> -<ul class="navbar"> +<li><a href="about_this_page.php#file_upload" target="_blank">About this page</a> <li><a href="help.php" target="_blank">Help</a> <li><a href="home.php">Home</a> </ul> -<div id="outernew"> -<p><h3><?php -print("Estimated run time for current dataset using default settings: $runtime seconds"); +<div id="outernew_load"> +<br> + <a class=button3 href="executionprogress_default.php?My_key=<?php print($keyval);?>">Perform Bayesian network modeling using default settings. Estimated runtime: <?php print($runtime);?> seconds</a> +<br> +<a class=button3 href="create_tiers_gom_part1.php?My_key=<?php print($keyval);?>">Go to structure learning settings and the BNW structural constraint interface</a> +<br> +<a class=button3 href="remove_variables.php?My_key=<?php print($keyval);?>">Remove variables from data set</a> +<br> +<br> +<p><h3>The uploaded data file has the following properties: +<br></h3> +<?php +$table_text = json_encode(file("file://".$input_table_file)); ?> -<br><br><br><br></h3> + <div class="d3_table" id="table_div1"> + <script type="text/javascript"> + d3.text("", function(error, raw_temp){ + var dsv = d3.dsvFormat("\t") + var data1 = <?php echo $table_text?> + var data2 = data1.join("") + var data = dsv.parse(data2) + var caption_text = data.pop() + if (error) throw error; + tabulate_caption("#table_div1",data,caption_text.Variable); + }); +</script> +</div> +<br><br><br></h3> </p> <br> <br> @@ -178,6 +192,18 @@ print("Estimated run time for current dataset using default settings: $runtime s <br> <br> <br> +<br> +<br> +<br> +<br> +<br> +<br> +<br> +<br> +<br> +<br> +<br> +<br> </div> <?php } |