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diff --git a/README.md b/README.md index fff760b5..6c9f7399 100644 --- a/README.md +++ b/README.md @@ -2,21 +2,16 @@ This contains the code for the Bayesian Network Webserver (BNW). -The master branch will be the stable version of the code for running with GeneNetwork. The original BNW website is compbio.uthsc.edu/BNW, which currently redirects to BNW_1.2. - -The current development version of BNW is compbio.uthsc.edu/BNW_1.22. This is the 1.22_development branch. I added a couple of new visualizations to this version. +The master branch will be the stable version of the code for running with GeneNetwork. The original BNW website is compbio.uthsc.edu/BNW, which currently redirects to BNW_1.3. There are a couple of files in the info_files directory that provide descriptions of the BNW code and other information. There are six branches. -1) master: This will have the code to pull and use in the guix container on Gene Network cluster. +1) master: This is the version of BNW that is used on the GENENET8 server. 2) matlab_original (compbio.uthsc.edu/BNW_1.01): This is functionally identical to the original BNW code. The only difference is that unused files were removed. 3) octave_version (compbio.uthsc.edu/BNW_1.02): This should perform similarly to the original version of BNW. However, instead of Matlab, Octave is used and a couple of new features were added. -4) octave_php_separate (compbio.uthsc.edu/BNW_1.1): The main goal here is to rewrite the code so that all calculations are performed in Octave. PHP code only reads from files and displays figures. I am making other small changes along the way. This branch could probably be deleted at some point. - -5) version-1.21: Temporarily keeping this version while cleaning up code and testing things in version 1.22. +4) genenet6_final_1.3: This is the final version of BNW on the GENENET6 server. I will keep this here until the transition to GENENET8 is complete and stable. -6) 1.22-development: Current development version which I will keep on genenet. |