diff options
| -rw-r--r-- | README.md | 16 |
1 files changed, 8 insertions, 8 deletions
diff --git a/README.md b/README.md index fac36d7b..192d9071 100644 --- a/README.md +++ b/README.md @@ -4,23 +4,23 @@ This contains the code for the Bayesian Network Webserver (BNW). The original BNW website is compbio.uthsc.edu/BNW, which currently redirects to BNW_1.2. -The current development version of BNW is compbio.uthsc.edu/BNW_1.21. I am working on the cross-validation/test set predictions in the development version. I also added a couple of usability features. +The current development version of BNW is compbio.uthsc.edu/BNW_1.21. I added cross-validation/test set predictions in the development version as well as a couple of usability features. -Below are a couple of text files that provide descriptions of the BNW code. +There are a couple of files here that provide descriptions of the BNW code. -BNW_file_overview.txt lists the files that are needed to run BNW and gives a brief description of the purpose of each file. -BNW_data_flow.txt goes through a typical session of BNW describing the order in which codes and scripts are used, as well as when output files are written and the output file format. -There are five branches. -1) master: This is currently compbio.uthsc.edu/BNW_1.21 on the BNW server. -2) new_server: Branched from master to make changes with the new server. -3) matlab_original (compbio.uthsc.edu/BNW_1.01): This is functionally identical to the original BNW code. The only difference is that unused files were removed. +There are four branches. +1) master: This is currently compbio.uthsc.edu/BNW_1.21 on the BNW server. + +2) matlab_original (compbio.uthsc.edu/BNW_1.01): This is functionally identical to the original BNW code. The only difference is that unused files were removed. -4) octave_version (compbio.uthsc.edu/BNW_1.02): This should perform similarly to the original version of BNW. However, instead of Matlab, Octave is used and a couple of new features were added. +3) octave_version (compbio.uthsc.edu/BNW_1.02): This should perform similarly to the original version of BNW. However, instead of Matlab, Octave is used and a couple of new features were added. -5) octave_php_separate (compbio.uthsc.edu/BNW_1.1): The main goal here is to rewrite the code so that all calculations are performed in Octave. PHP code only reads from files and displays figures. I am making other small changes along the way. This branch could probably be deleted at some point. +4) octave_php_separate (compbio.uthsc.edu/BNW_1.1): The main goal here is to rewrite the code so that all calculations are performed in Octave. PHP code only reads from files and displays figures. I am making other small changes along the way. This branch could probably be deleted at some point. |