BNW using Octave instead of Matlab.

This version of BNW should perform the same as the original version. The only difference is that it uses Octave instead of Matlab when running BayesNet Toolbox during parameter learning.

I am calling this BNW_1.02. It can be accessed at:
compbio.uthsc.edu/BNW_1.02

8 files changed, 998 insertions, 0 deletions

diff --git a/sourcecodes/parameter_learning/test/Agbcontinuous_input.txt b/sourcecodes/parameter_learning/test/Agbcontinuous_input.txt
new file mode 100644
index 00000000..bcd9b88c
--- /dev/null
+++ b/sourcecodes/parameter_learning/test/Agbcontinuous_input.txt
@@ -0,0 +1,103 @@
+GenotypeA	GenotypeB	Gene1	Gene2	Gene3	Gene4
+2	2	1	1	1	1
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+
diff --git a/sourcecodes/parameter_learning/test/Agbmap.txt b/sourcecodes/parameter_learning/test/Agbmap.txt
new file mode 100644
index 00000000..bb1dd64f
--- /dev/null
+++ b/sourcecodes/parameter_learning/test/Agbmap.txt
@@ -0,0 +1,6 @@
+GenotypeA	2	0.502519	1.500000
+GenotypeB	1	0.500908	1.460000
+Gene1	2	0.553536	0.475371
+Gene2	1	0.485907	0.701417
+Gene3	1	0.485352	0.313494
+Gene4	1	0.435265	0.819489
diff --git a/sourcecodes/parameter_learning/test/Agbmapdata.txt b/sourcecodes/parameter_learning/test/Agbmapdata.txt
new file mode 100644
index 00000000..fa8be0bd
--- /dev/null
+++ b/sourcecodes/parameter_learning/test/Agbmapdata.txt
@@ -0,0 +1 @@
+GenotypeB	Gene3	GenotypeA	Gene2	Gene4	Gene1
diff --git a/sourcecodes/parameter_learning/test/Agbnet_figure.txt b/sourcecodes/parameter_learning/test/Agbnet_figure.txt
new file mode 100644
index 00000000..8243b7d9
--- /dev/null
+++ b/sourcecodes/parameter_learning/test/Agbnet_figure.txt
@@ -0,0 +1,440 @@
+6
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diff --git a/sourcecodes/parameter_learning/test/Agbnet_figure.txt.bk b/sourcecodes/parameter_learning/test/Agbnet_figure.txt.bk
new file mode 100644
index 00000000..8243b7d9
--- /dev/null
+++ b/sourcecodes/parameter_learning/test/Agbnet_figure.txt.bk
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diff --git a/sourcecodes/parameter_learning/test/Agbnnode.txt b/sourcecodes/parameter_learning/test/Agbnnode.txt
new file mode 100644
index 00000000..1e8b3149
--- /dev/null
+++ b/sourcecodes/parameter_learning/test/Agbnnode.txt
@@ -0,0 +1 @@
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diff --git a/sourcecodes/parameter_learning/test/Agbstructure_input.txt b/sourcecodes/parameter_learning/test/Agbstructure_input.txt
new file mode 100644
index 00000000..10766f0c
--- /dev/null
+++ b/sourcecodes/parameter_learning/test/Agbstructure_input.txt
@@ -0,0 +1,7 @@
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diff --git a/sourcecodes/parameter_learning/test/octave-core b/sourcecodes/parameter_learning/test/octave-core
new file mode 100644
index 00000000..678fda92
--- /dev/null
+++ b/sourcecodes/parameter_learning/test/octave-core
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