GENENET8 update

1 files changed, 136 insertions, 0 deletions

diff --git a/sourcecodes/net_structure.php~ b/sourcecodes/net_structure.php~
new file mode 100644
index 00000000..d4462962
--- /dev/null
+++ b/sourcecodes/net_structure.php~
@@ -0,0 +1,136 @@
+<?php
+  //Going to modify this so it just writes the uploaded data to a file.
+  //Standardization and determining other factors will be performed in
+  //  a Matlab/Octave script.
+
+include("header_new.inc");
+include("header_batchsearch.inc");
+include("input_validate.php");
+
+$searchID="";
+$UploadValue="NO";
+$TextFile=$HTTP_POST_FILES["MyFile"]["name"];
+
+if($_POST["My_key"]!="")
+  $keyval=$_POST["My_key"];
+
+if($_GET["My_key"]!="")
+  $keyval=$_GET["My_key"];
+
+$keyval=valid_keyval($keyval);
+
+$sid="structure_input";
+//$dir="./data/";
+$dir="/tmp/bnw/".$keyval;
+
+$TextinFile=$dir.$sid.".txt";
+
+//$TextinFileFinal=$dir.$sid.".txt";
+
+//$TextinFile=$dir.$sid."_temp.txt";
+
+if(isset($HTTP_POST_VARS["searchkey"]))
+{
+   $searchID=$HTTP_POST_VARS["searchkey"];
+
+}
+
+if($searchID=="")
+{
+?>
+
+<!-- Site navigation menu -->
+<ul class="navbar2">
+  <li><a href="help.php#file_format" target="_blank">Data formatting guidelines</a> 
+  <li><a href="help.php" target="_blank">Help</a>
+  <li><a href="home.php">Home</a>
+</ul>
+<?php
+}
+
+if(isset($HTTP_POST_VARS["MyUpload"]))
+{
+   $UploadValue=$HTTP_POST_VARS["MyUpload"];
+   if ($UploadValue=="YES")
+   {
+        if($TextFile!="")
+        {
+            $sta=move_uploaded_file($HTTP_POST_FILES['MyFile']['tmp_name'],$TextinFile);
+            if(!$sta)
+            {
+                 echo "<script type='text/javascript'> window.alert ('Sorry, error uploading $TextFile.')</script>";
+                 flush();
+                 exit();
+            }
+            else
+            {
+                $searchID=file_get_contents("$TextinFile");
+		//unlink($TextinFile);
+            }
+        }
+       else
+       {
+           echo "<script type='text/javascript'> window.alert ('Sorry, please select upload file.')</script>";
+       }
+   }
+}
+
+?>
+<div id="outernew">
+<h2><font>Upload structure file</font></h2>
+<FORM name="key_search" id="in_form" enctype="multipart/form-data" ACTION="net_structure.php" METHOD=POST>
+<INPUT style="background-color:#FFFFFF;" type="file" name="MyFile" id="MyFile_id" class="inputfile" onchange="upload_submit()" >
+<label for="MyFile_id">Choose a file. . .</label>
+  <INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
+<INPUT TYPE="hidden" name="MyUpload" value="NO">
+  <textarea name="searchkey" style="display:none;"><?PHP print($searchID)?> </textarea>
+<br><br>
+  <INPUT TYPE="submit" class=button2 value="  Load example structure  " onclick="return demo_str();">&nbsp&nbsp&nbsp
+      <INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
+</FORM>
+</div>
+<script>
+  function upload_submit() {
+    Upload();
+    document.getElementById("in_form").submit();
+  }
+</script>
+
+<?php
+
+if($searchID!="")
+    {
+    if ($UploadValue=="NO")
+      {
+  $str_arr=array();
+  $searchID=trim($searchID);
+  $str_arr=explode("\n",$searchID);
+  $data=array();
+
+  $fpmain = fopen($TextinFile,"w");
+
+  foreach($str_arr as $line)
+  {
+    $line=trim($line);
+    fwrite($fpmain, "$line\n");
+
+  }
+      }
+?>
+<ul class="navbar2">
+  <li><a href="help.php#file_format" target="_blank">Data formatting guidelines</a> 
+  <li><a href="help.php" target="_blank">Help</a>
+  <li><a href="home.php">Home</a>
+</ul>
+<div id="outernew_load">
+<br>
+<a class=button3 href="graphviz_structure.php?My_key=<?php print($keyval);?>">Display uploaded network</a>
+<br>
+<?php
+}
+?>
+
+</body>
+</html>
+
+