Moving final GENENET8 version to master

1 files changed, 0 insertions, 136 deletions

diff --git a/sourcecodes/net_structure.php~ b/sourcecodes/net_structure.php~
deleted file mode 100644
index d4462962..00000000
--- a/sourcecodes/net_structure.php~
+++ /dev/null
@@ -1,136 +0,0 @@
-<?php
-  //Going to modify this so it just writes the uploaded data to a file.
-  //Standardization and determining other factors will be performed in
-  //  a Matlab/Octave script.
-
-include("header_new.inc");
-include("header_batchsearch.inc");
-include("input_validate.php");
-
-$searchID="";
-$UploadValue="NO";
-$TextFile=$HTTP_POST_FILES["MyFile"]["name"];
-
-if($_POST["My_key"]!="")
-  $keyval=$_POST["My_key"];
-
-if($_GET["My_key"]!="")
-  $keyval=$_GET["My_key"];
-
-$keyval=valid_keyval($keyval);
-
-$sid="structure_input";
-//$dir="./data/";
-$dir="/tmp/bnw/".$keyval;
-
-$TextinFile=$dir.$sid.".txt";
-
-//$TextinFileFinal=$dir.$sid.".txt";
-
-//$TextinFile=$dir.$sid."_temp.txt";
-
-if(isset($HTTP_POST_VARS["searchkey"]))
-{
-   $searchID=$HTTP_POST_VARS["searchkey"];
-
-}
-
-if($searchID=="")
-{
-?>
-
-<!-- Site navigation menu -->
-<ul class="navbar2">
-  <li><a href="help.php#file_format" target="_blank">Data formatting guidelines</a> 
-  <li><a href="help.php" target="_blank">Help</a>
-  <li><a href="home.php">Home</a>
-</ul>
-<?php
-}
-
-if(isset($HTTP_POST_VARS["MyUpload"]))
-{
-   $UploadValue=$HTTP_POST_VARS["MyUpload"];
-   if ($UploadValue=="YES")
-   {
-        if($TextFile!="")
-        {
-            $sta=move_uploaded_file($HTTP_POST_FILES['MyFile']['tmp_name'],$TextinFile);
-            if(!$sta)
-            {
-                 echo "<script type='text/javascript'> window.alert ('Sorry, error uploading $TextFile.')</script>";
-                 flush();
-                 exit();
-            }
-            else
-            {
-                $searchID=file_get_contents("$TextinFile");
-		//unlink($TextinFile);
-            }
-        }
-       else
-       {
-           echo "<script type='text/javascript'> window.alert ('Sorry, please select upload file.')</script>";
-       }
-   }
-}
-
-?>
-<div id="outernew">
-<h2><font>Upload structure file</font></h2>
-<FORM name="key_search" id="in_form" enctype="multipart/form-data" ACTION="net_structure.php" METHOD=POST>
-<INPUT style="background-color:#FFFFFF;" type="file" name="MyFile" id="MyFile_id" class="inputfile" onchange="upload_submit()" >
-<label for="MyFile_id">Choose a file. . .</label>
-  <INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
-<INPUT TYPE="hidden" name="MyUpload" value="NO">
-  <textarea name="searchkey" style="display:none;"><?PHP print($searchID)?> </textarea>
-<br><br>
-  <INPUT TYPE="submit" class=button2 value="  Load example structure  " onclick="return demo_str();">&nbsp&nbsp&nbsp
-      <INPUT TYPE="hidden" NAME="My_key" value=<?php print($keyval) ?> >
-</FORM>
-</div>
-<script>
-  function upload_submit() {
-    Upload();
-    document.getElementById("in_form").submit();
-  }
-</script>
-
-<?php
-
-if($searchID!="")
-    {
-    if ($UploadValue=="NO")
-      {
-  $str_arr=array();
-  $searchID=trim($searchID);
-  $str_arr=explode("\n",$searchID);
-  $data=array();
-
-  $fpmain = fopen($TextinFile,"w");
-
-  foreach($str_arr as $line)
-  {
-    $line=trim($line);
-    fwrite($fpmain, "$line\n");
-
-  }
-      }
-?>
-<ul class="navbar2">
-  <li><a href="help.php#file_format" target="_blank">Data formatting guidelines</a> 
-  <li><a href="help.php" target="_blank">Help</a>
-  <li><a href="home.php">Home</a>
-</ul>
-<div id="outernew_load">
-<br>
-<a class=button3 href="graphviz_structure.php?My_key=<?php print($keyval);?>">Display uploaded network</a>
-<br>
-<?php
-}
-?>
-
-</body>
-</html>
-
-