GENENET8 update

1 files changed, 0 insertions, 150 deletions

diff --git a/sourcecodes/kfold_cv_example.php b/sourcecodes/kfold_cv_example.php
deleted file mode 100644
index 68c1a3bf..00000000
--- a/sourcecodes/kfold_cv_example.php
+++ /dev/null
@@ -1,150 +0,0 @@
-<?php 
-include("header_new.inc");
-include("input_validate.php");
-if($_GET["My_key"]!="")
-  $keyval=valid_keyval($_GET["My_key"]);
-if($_POST["My_key"]!="")
-  $keyval=valid_keyval($_POST["My_key"]);
-?>
-
-<?php
-$varName = "";
-$varNameErr = "";
-$nm_folds="";
-
-if ($_SERVER["REQUEST_METHOD"] == "POST") {
-  $nm_folds = (int)$_POST['nm_folds'];
-  if (empty($_POST["varName"])) {
-    $varNameErr = "Entering a variable name is required";
-  } else {
-    //    $varName = test_input($_POST["varName"]);
-    $varName = valid_input($_POST["varName"]);
-    $varNameErr = "1";
-    // check if name only contains letters, numbers, and whitespace
-    //   if (!preg_match('/^[-A-Za-z\d\ \t\r\n_\.]+$',$varName)) {
-    //      $varNameErr = "The input string contains characters that are not allowed";
-    //    }
-  }
-}
-
-
-function test_input($data) {
-  $data = trim($data);
-  $data = stripslashes($data);
-  $data = htmlspecialchars($data);
-  return $data;
-}
-
-?>
-
-
-<!-- Site navigation menu -->
-<ul class="navbar2">
-  <li><p>Network ID:<br><?php print($keyval);?></p></li>
-</ul>
-<ul class="navbar">
-  <li><a href="javascript:void(0);"
-  NAME="Network" title="Network" onClick=window.open("layout_example.php?My_key=<?php print($keyval);?>","_self");>Return to network</a>
-  <li><a href="javascript:void(0);"
-  NAME="CV_predictions" title="CV_pred" onClick=window.open("cv_predictions_example.php?My_key=<?php print($keyval);?>","_self");>Return to validation and predictions menu</a>
-
-  <li><a href="help.php">Help</a>
-  <li><a href="home.php">Home</a>
-
-
-</ul>
-
-
-
-
-<div id="outer">
-<!-- Main content -->
-
-<?php
-  $filename1="./data/".$keyval."kfoldCV.txt";
-  $filename2="./data/".$keyval."kfoldCV_temp.txt";
-if(file_exists($filename2))
- {?>
-<br>
-  <h2> k-fold cross-validation results are being calculated</h2>
-<br>
-<?php
- }
- else if(file_exists($filename1))
- {?>
-<br>
-    <h2> <a href=<?php $d="./data/".$keyval."kfoldCV.txt"; print($d);?>>View cross-validation results</a></h2>
-<br>
-<h3>Perform k-fold cross-validation of another network variable</h3>
-<p align="justify"> 
- Enter the name of variable and number of folds below to validate predictions of that variable.
-<br>
-</p>
-<FORM METHOD="post" ACTION="<?php echo htmlspecialchars($_SERVER["PHP_SELF"]);?>">
-  Variable name:<INPUT TYPE="text" name="varName" value="<?php echo $varName;?>" style="padding: 2px 5px; border: 2px solid; border-color: black black black black; font-family: Georgia, ..., serif; font-size: 18px; display: block; height: 30px; width: 300px;">
-<span class="error"> <?php if($varNameErr!="1") {echo $varNameErr;};?></span>
-<br>
-    Number of folds:<br><SELECT NAME="nm_folds">
-     <option value="2">2</option>
-     <option value="3">3</option>
-     <option value="4">4</option>
-     <option value="5">5</option>
-     <option value="6">6</option>
-     <option value="7">7</option>
-     <option value="8">8</option>
-     <option value="9">9</option>
-     <option value="10">10</option>
-     </select>
-     <input type='hidden' name='My_key' value='<?php print($keyval)?>'>
-     <br><br><input type="submit" name="submit" value="Submit" style="display: block; height: 30px; width:100px; font-family: Georgia, ..., serif; font-size: 16px;">
-</FORM>
-<br>
-<?php
-     } else {
-?>
-<h2>Perform k-fold cross-validation of network</h2>
-<p align="justify"> 
-  To perform cross-validation, enter the name of the variable <br>that you want to test the predictions of and the number <br>of folds that the data should be separated into below.
-<br>
-<FORM METHOD="post" ACTION="<?php echo htmlspecialchars($_SERVER["PHP_SELF"]);?>">
-  Variable Name:<INPUT TYPE="text" name="varName" value="<?php echo $varName;?>" 
-  style="padding: 2px 5px; border: 2px solid; border-color: black black black black; font-family: Georgia, ..., serif; font-size: 18px; display: block; height: 30px; width: 300px;">
-  <span class="error"> <?php if($varNameErr!="1") {echo $varNameErr;};?></span>
-  <br>
-     Number of folds:<br><SELECT NAME="nm_folds">
-     <option value="2">2</option>
-     <option value="3">3</option>
-     <option value="4">4</option>
-     <option value="5">5</option>
-     <option value="6">6</option>
-     <option value="7">7</option>
-     <option value="8">8</option>
-     <option value="9">9</option>
-     <option value="10">10</option>
-     </select>
-     <input type='hidden' name='My_key' value='<?php print($keyval)?>'>
-     <br><br><input type="submit" name="submit" value="Submit" style="display: block; height: 30px; width:100px; font-family: Georgia, ..., serif; font-size: 16px;">
-</FORM>
-</p>
-<br>
-
-<?php
-}
-
-if($nm_folds!="")
-{
-  $command = './run_scripts/run_kfold '.$keyval.' '.$varName.' '.$nm_folds;
-  $output = shell_exec("$command > /dev/null 2 > /dev/null &");
-  $pred_link='cv_predictions_example.php?My_key='.$keyval;
-  sleep(1);
-  echo "<br>";
-  echo "Calculation submitted";
-  echo "<br>";
-  echo "<a href=$pred_link>Click to return to cross-validation and predictions menu</a>";
-}
-?>
-
-</div>
-</body>
-
-