diff options
| author | ziejd2 | 2021-02-24 15:19:03 -0600 |
|---|---|---|
| committer | ziejd2 | 2021-02-24 15:19:03 -0600 |
| commit | 1427e9bf4f85823164b4573a3bcf1ba3ba6b04d0 (patch) | |
| tree | d4356879a9b0a3d44063a6b292ef0197173697af /sourcecodes/kfold_cv.php | |
| parent | a2b306b10fb07f07c63235861ccfe460153e8609 (diff) | |
| download | BNW-1427e9bf4f85823164b4573a3bcf1ba3ba6b04d0.tar.gz | |
Moving final GENENET8 version to master
Diffstat (limited to 'sourcecodes/kfold_cv.php')
| -rw-r--r-- | sourcecodes/kfold_cv.php | 54 |
1 files changed, 25 insertions, 29 deletions
diff --git a/sourcecodes/kfold_cv.php b/sourcecodes/kfold_cv.php index 16de2d5c..f162c796 100644 --- a/sourcecodes/kfold_cv.php +++ b/sourcecodes/kfold_cv.php @@ -1,10 +1,10 @@ <head> -<meta http-equiv='cache-control' content='no-cache'> -<meta http-equiv='expires' content='0'> +<meta http-equiv='cache-control' content='no-cache'> +<meta http-equiv='expires' content='0'> <meta http-equiv='pragma' content='no-cache'> <script src="./scripts/d3.v4.min.js"></script> <script src="./scripts/create_table.js"></script> -<?php +<?php include("header_new.inc"); include("header_batchsearch.inc"); include("input_validate.php"); @@ -47,7 +47,7 @@ function test_input($data) { ?> <?php -$varName_file = "/var/lib/genenet/bnw/".$keyval."name.txt"; +$varName_file = "/tmp/bnw/".$keyval."name.txt"; $varName_line = file_get_contents($varName_file); $varNamesArr = explode("\t",$varName_line); ?> @@ -76,44 +76,39 @@ $varNamesArr = explode("\t",$varName_line); <?php // $filename1="./data/".$keyval."kfoldCV.txt"; // $filename2="./data/".$keyval."kfoldCV_temp.txt"; - $dir="/var/lib/genenet/bnw/"; - $filename1=$keyval."kfoldCV.txt"; - $filename2=$keyval."kfoldCV_temp.txt"; -$plotly_file=$keyval."kfold_plotly.html"; -//$plotly_file_local="./data/".$keyval."kfold_plotly.html"; -//$pred_file_local="./data/".$keyval."kfoldCV.txt"; - -if(file_exists($dir.$filename2)) + $dir="/tmp/bnw/"; + $filename1=$dir.$keyval."kfoldCV.txt"; + $filename2=$dir.$keyval."kfoldCV_temp.txt"; +$plotly_file=$dir.$keyval."kfold_plotly.html"; +$plotly_file_local="./data/".$keyval."kfold_plotly.html"; +$pred_file_local="./data/".$keyval."kfoldCV.txt"; + +if(file_exists($filename2)) {?> <br> <h2> k-fold cross-validation results are being calculated</h2> <br> <?php } - else if(file_exists($dir.$plotly_file)) - { - $table_text = json_encode(file("file://".$dir.$filename1)); - //$plotly_data=file_get_contents("file://".$dir.$plotly_file); -?> + else if(file_exists($filename1)) + {?> <div> - <object width="800" height="500" data=<?php include($dir.$plotly_file)?> + <object type="text/html" data=<?php print($plotly_file_local);?> width="800" height="500" > </object> </div> <div class="d3_table" id="table_div1"> <script type="text/javascript"> - d3.text("", function(error,raw) { + d3.text("<?php print($pred_file_local);?>", function(error,raw) { var dsv=d3.dsvFormat("\t") - var data1 = <?php echo $table_text;?>; - var data2 = data1.join(""); - var data=dsv.parse(data2) - var caption_text=data.pop() - if (error) throw error; - tabulate_caption("#table_div1",data,caption_text.CaseRow); - }); + var data=dsv.parse(raw) + var caption_text=data.pop() + if (error) throw error; + tabulate_caption("#table_div1",data,caption_text.CaseRow); + }); </script> </div> <br> - <a class=button2 href=<?php print("reroute.php?".$filename1);?>>Download cross-validation results</a> + <a class=button2 href=<?php print($pred_file_local);?>>Download cross-validation results</a> <br> <br> <h3>Perform k-fold cross-validation of another network variable</h3><br> @@ -146,8 +141,9 @@ if(file_exists($dir.$filename2)) } else { ?> <h2>Perform k-fold cross-validation of network</h2> -<p align="justify"> - To perform cross-validation, select the name of the variable that you want to test <br>the predictions of and the number of folds below. <br><br> +<p align="justify"> + To perform cross-validation, select the name of the variable that you want to test <br>the predictions of and the number of folds below. +<br><br> <FORM METHOD="post" ACTION="<?php echo htmlspecialchars($_SERVER["PHP_SELF"]);?>"> <p style='font-size:18px'>Select variable name:</p> <select style='font-size:18px' Name="varName"> |