Moving final GENENET8 version to master

20 files changed, 0 insertions, 776 deletions

diff --git a/sourcecodes/data/old/examplezoo/fSfban.txt b/sourcecodes/data/old/examplezoo/fSfban.txt
deleted file mode 100644
index 9197eeec..00000000
--- a/sourcecodes/data/old/examplezoo/fSfban.txt
+++ /dev/null
@@ -1,261 +0,0 @@
-From	To
-aquatic	airborne
-aquatic	venomous
-aquatic	predator
-aquatic	domestic
-airborne	aquatic
-airborne	venomous
-airborne	predator
-airborne	domestic
-venomous	aquatic
-venomous	airborne
-venomous	predator
-venomous	domestic
-predator	aquatic
-predator	airborne
-predator	venomous
-predator	domestic
-domestic	aquatic
-domestic	airborne
-domestic	venomous
-domestic	predator
-eggs	aquatic
-eggs	airborne
-eggs	venomous
-eggs	predator
-eggs	domestic
-milk	aquatic
-milk	airborne
-milk	venomous
-milk	predator
-milk	domestic
-backbone	aquatic
-backbone	airborne
-backbone	venomous
-backbone	predator
-backbone	domestic
-breathes	aquatic
-breathes	airborne
-breathes	venomous
-breathes	predator
-breathes	domestic
-catsize	aquatic
-catsize	airborne
-catsize	venomous
-catsize	predator
-catsize	domestic
-tail	aquatic
-tail	airborne
-tail	venomous
-tail	predator
-tail	domestic
-toothed	aquatic
-toothed	airborne
-toothed	venomous
-toothed	predator
-toothed	domestic
-hair	aquatic
-hair	airborne
-hair	venomous
-hair	predator
-hair	domestic
-feathers	aquatic
-feathers	airborne
-feathers	venomous
-feathers	predator
-feathers	domestic
-fins	aquatic
-fins	airborne
-fins	venomous
-fins	predator
-fins	domestic
-legs	aquatic
-legs	airborne
-legs	venomous
-legs	predator
-legs	domestic
-type	aquatic
-type	airborne
-type	venomous
-type	predator
-type	domestic
-eggs	aquatic
-eggs	airborne
-eggs	venomous
-eggs	predator
-eggs	domestic
-milk	aquatic
-milk	airborne
-milk	venomous
-milk	predator
-milk	domestic
-backbone	aquatic
-backbone	airborne
-backbone	venomous
-backbone	predator
-backbone	domestic
-breathes	aquatic
-breathes	airborne
-breathes	venomous
-breathes	predator
-breathes	domestic
-catsize	eggs
-catsize	milk
-catsize	backbone
-catsize	breathes
-tail	eggs
-tail	milk
-tail	backbone
-tail	breathes
-toothed	eggs
-toothed	milk
-toothed	backbone
-toothed	breathes
-hair	eggs
-hair	milk
-hair	backbone
-hair	breathes
-feathers	eggs
-feathers	milk
-feathers	backbone
-feathers	breathes
-fins	eggs
-fins	milk
-fins	backbone
-fins	breathes
-legs	eggs
-legs	milk
-legs	backbone
-legs	breathes
-type	eggs
-type	milk
-type	backbone
-type	breathes
-catsize	tail
-catsize	toothed
-catsize	hair
-catsize	feathers
-catsize	fins
-catsize	legs
-tail	catsize
-tail	toothed
-tail	hair
-tail	feathers
-tail	fins
-tail	legs
-toothed	catsize
-toothed	tail
-toothed	hair
-toothed	feathers
-toothed	fins
-toothed	legs
-hair	catsize
-hair	tail
-hair	toothed
-hair	feathers
-hair	fins
-hair	legs
-feathers	catsize
-feathers	tail
-feathers	toothed
-feathers	hair
-feathers	fins
-feathers	legs
-fins	catsize
-fins	tail
-fins	toothed
-fins	hair
-fins	feathers
-fins	legs
-legs	catsize
-legs	tail
-legs	toothed
-legs	hair
-legs	feathers
-legs	fins
-catsize	aquatic
-catsize	airborne
-catsize	venomous
-catsize	predator
-catsize	domestic
-tail	aquatic
-tail	airborne
-tail	venomous
-tail	predator
-tail	domestic
-toothed	aquatic
-toothed	airborne
-toothed	venomous
-toothed	predator
-toothed	domestic
-hair	aquatic
-hair	airborne
-hair	venomous
-hair	predator
-hair	domestic
-feathers	aquatic
-feathers	airborne
-feathers	venomous
-feathers	predator
-feathers	domestic
-fins	aquatic
-fins	airborne
-fins	venomous
-fins	predator
-fins	domestic
-legs	aquatic
-legs	airborne
-legs	venomous
-legs	predator
-legs	domestic
-catsize	eggs
-catsize	milk
-catsize	backbone
-catsize	breathes
-tail	eggs
-tail	milk
-tail	backbone
-tail	breathes
-toothed	eggs
-toothed	milk
-toothed	backbone
-toothed	breathes
-hair	eggs
-hair	milk
-hair	backbone
-hair	breathes
-feathers	eggs
-feathers	milk
-feathers	backbone
-feathers	breathes
-fins	eggs
-fins	milk
-fins	backbone
-fins	breathes
-legs	eggs
-legs	milk
-legs	backbone
-legs	breathes
-type	catsize
-type	tail
-type	toothed
-type	hair
-type	feathers
-type	fins
-type	legs
-type	aquatic
-type	airborne
-type	venomous
-type	predator
-type	domestic
-type	eggs
-type	milk
-type	backbone
-type	breathes
-type	catsize
-type	tail
-type	toothed
-type	hair
-type	feathers
-type	fins
-type	legs
diff --git a/sourcecodes/data/old/examplezoo/fSfcontinuous_input.txt b/sourcecodes/data/old/examplezoo/fSfcontinuous_input.txt
deleted file mode 100644
index 340ad4f6..00000000
--- a/sourcecodes/data/old/examplezoo/fSfcontinuous_input.txt
+++ /dev/null
@@ -1,104 +0,0 @@
-hair	feathers	eggs	milk	airborne	aquatic	predator	toothed	backbone	breathes	venomous	fins	legs	tail	domestic	catsize	type
-2	2	2	2	2	2	2	2	2	2	2	2	6	2	2	2	7
-1	1	2	1	1	2	2	2	2	1	1	2	1	2	1	1	4
-1	1	2	1	1	2	1	2	2	1	1	2	1	2	2	1	4
-1	1	2	1	1	2	2	2	2	1	1	2	1	2	1	1	4
-1	1	2	1	1	2	2	2	2	1	1	2	1	2	1	1	4
-1	1	2	1	1	1	2	1	1	1	1	1	1	1	1	1	7
-1	1	2	1	1	2	2	2	2	1	1	2	1	2	1	2	4
-1	1	1	2	1	2	2	2	2	2	1	2	1	2	1	2	1
-1	1	2	1	1	2	1	2	2	1	1	2	1	2	1	1	4
-1	1	2	1	1	2	2	2	2	1	1	2	1	2	1	1	4
-1	1	2	1	1	2	2	2	2	1	1	2	1	2	1	2	4
-1	1	2	1	1	2	2	2	2	1	1	2	1	2	1	1	4
-1	1	2	1	1	1	2	2	2	2	2	1	1	2	1	1	3
-1	1	1	2	1	2	2	2	2	2	1	2	1	2	1	2	1
-1	1	2	1	1	2	1	2	2	1	1	2	1	2	1	1	4
-2	1	1	2	1	2	2	2	2	2	1	2	1	1	1	2	1
-1	1	1	1	1	2	2	2	2	1	2	1	1	2	1	1	3
-1	1	2	1	1	2	2	1	1	1	2	1	1	1	1	1	7
-1	1	2	1	1	1	2	2	2	2	1	1	1	2	1	1	3
-1	1	2	1	1	1	1	1	1	2	1	1	1	1	1	1	7
-1	1	2	1	1	2	1	2	2	1	1	2	1	2	1	1	4
-1	1	2	1	1	2	2	2	2	1	2	2	1	2	1	2	4
-1	1	2	1	1	2	2	2	2	1	1	2	1	2	1	2	4
-1	1	2	1	1	1	1	1	1	2	1	1	1	1	1	1	7
-1	2	2	1	2	1	1	1	2	2	1	1	2	2	2	1	2
-1	2	2	1	2	1	2	1	2	2	1	1	2	2	1	1	2
-1	2	2	1	2	1	1	1	2	2	1	1	2	2	2	1	2
-1	2	2	1	2	2	1	1	2	2	1	1	2	2	1	1	2
-1	2	2	1	2	1	1	1	2	2	1	1	2	2	1	2	2
-2	1	1	2	2	1	1	2	2	2	1	1	2	2	1	1	1
-2	1	1	2	1	1	2	2	2	2	1	1	2	1	2	2	1
-2	1	1	2	1	1	1	2	2	2	1	1	2	1	1	2	1
-1	2	2	1	2	2	2	1	2	2	1	1	2	2	1	1	2
-1	2	2	1	2	1	2	1	2	2	1	1	2	2	1	1	2
-1	2	2	1	1	1	2	1	2	2	1	1	2	2	1	1	2
-1	2	2	1	2	1	1	1	2	2	1	1	2	2	1	1	2
-1	2	2	1	1	1	1	1	2	2	1	1	2	2	1	2	2
-1	2	2	1	2	1	1	1	2	2	1	1	2	2	2	1	2
-1	2	2	1	1	2	2	1	2	2	1	1	2	2	1	2	2
-1	2	2	1	2	1	1	1	2	2	1	1	2	2	1	1	2
-1	2	2	1	1	1	2	1	2	2	1	1	2	2	1	2	2
-2	1	1	2	1	2	2	2	2	2	1	2	2	2	1	2	1
-1	2	2	1	2	2	2	1	2	2	1	1	2	2	1	1	2
-1	2	2	1	2	2	2	1	2	2	1	1	2	2	1	1	2
-1	2	2	1	2	1	1	1	2	2	1	1	2	2	1	1	2
-2	1	1	2	1	1	1	2	2	2	1	1	2	2	1	1	1
-1	2	2	1	2	2	1	1	2	2	1	1	2	2	1	2	2
-2	1	1	2	2	1	1	2	2	2	1	1	2	2	1	1	1
-1	2	2	1	2	1	2	1	2	2	1	1	2	2	1	2	2
-2	1	1	2	1	1	1	2	2	2	1	1	2	2	1	2	1
-1	2	2	1	2	1	1	1	2	2	1	1	2	2	1	1	2
-2	1	1	2	1	1	2	2	2	2	1	1	3	1	1	2	1
-2	1	1	2	1	1	1	2	2	2	1	1	3	2	1	2	1
-2	1	1	2	1	1	2	2	2	2	1	1	3	1	1	2	1
-2	1	1	2	1	1	2	2	2	2	1	1	3	2	1	2	1
-2	1	1	2	1	1	1	2	2	2	1	1	3	2	1	2	1
-2	1	1	2	1	1	1	2	2	2	1	1	3	2	2	2	1
-2	1	1	2	1	1	1	2	2	2	1	1	3	1	2	1	1
-2	1	1	2	1	1	2	2	2	2	1	1	3	2	1	2	1
-1	1	2	1	1	2	2	1	1	1	1	1	3	1	1	1	7
-2	1	1	2	1	1	1	2	2	2	1	1	3	2	1	2	1
-2	1	1	2	1	1	1	2	2	2	1	1	3	2	1	2	1
-1	1	2	1	1	2	2	2	2	2	1	1	3	1	1	1	5
-1	1	2	1	1	2	2	2	2	2	2	1	3	1	1	1	5
-2	1	1	2	1	1	1	2	2	2	1	1	3	2	1	2	1
-2	1	1	2	1	1	1	2	2	2	1	1	3	2	2	2	1
-2	1	1	2	1	1	1	2	2	2	1	1	3	2	2	1	1
-2	1	1	2	1	1	1	2	2	2	1	1	3	2	1	1	1
-2	1	1	2	1	1	2	2	2	2	1	1	3	2	1	2	1
-2	1	1	2	1	1	2	2	2	2	1	1	3	2	1	2	1
-2	1	1	2	1	1	2	2	2	2	1	1	3	2	1	2	1
-2	1	1	2	1	2	2	2	2	2	1	1	3	2	1	2	1
-2	1	1	2	1	1	2	2	2	2	1	1	3	2	1	1	1
-2	1	1	2	1	1	2	2	2	2	1	1	3	2	1	2	1
-1	1	2	1	1	2	2	2	2	2	1	1	3	2	1	1	5
-2	1	1	2	1	1	2	2	2	2	1	1	3	2	1	1	1
-2	1	1	2	1	1	1	2	2	2	1	1	3	2	1	2	1
-2	1	2	2	1	2	2	1	2	2	1	1	3	2	1	2	1
-2	1	1	2	1	1	2	2	2	2	1	1	3	2	1	2	1
-2	1	1	2	1	1	1	2	2	2	1	1	3	2	2	2	1
-2	1	1	2	1	1	2	2	2	2	1	1	3	2	1	2	1
-2	1	1	2	1	1	2	2	2	2	1	1	3	2	2	2	1
-2	1	1	2	1	1	2	2	2	2	1	1	3	2	1	2	1
-2	1	1	2	1	1	1	2	2	2	1	1	3	2	2	2	1
-1	1	2	1	1	2	1	2	2	2	1	1	3	1	1	1	5
-1	1	2	1	1	1	1	1	2	2	1	1	3	2	1	2	3
-1	1	2	1	1	1	2	2	2	2	1	1	3	2	1	1	3
-2	1	1	2	1	1	1	2	2	2	1	1	3	2	1	1	1
-2	1	1	2	1	1	2	2	2	2	1	1	3	2	1	2	1
-1	1	2	1	1	2	2	1	1	1	1	1	4	1	1	1	7
-1	1	2	1	1	2	2	1	1	1	1	1	5	1	1	1	7
-1	1	2	1	1	1	1	1	1	2	1	1	5	1	1	1	6
-1	1	2	1	2	1	1	1	1	2	1	1	5	1	1	1	6
-2	1	2	1	2	1	1	1	1	2	2	1	5	1	2	1	6
-2	1	2	1	2	1	1	1	1	2	1	1	5	1	1	1	6
-1	1	2	1	2	1	2	1	1	2	1	1	5	1	1	1	6
-1	1	2	1	1	2	2	1	1	1	1	1	5	1	1	1	7
-2	1	2	1	2	1	1	1	1	2	1	1	5	1	1	1	6
-1	1	2	1	1	1	1	1	1	2	1	1	5	1	1	1	6
-2	1	2	1	2	1	1	1	1	2	2	1	5	1	1	1	6
-1	1	2	1	1	2	2	1	1	1	1	1	6	1	1	2	7
-1	1	1	1	1	1	2	1	1	2	2	1	6	2	1	1	7
-
diff --git a/sourcecodes/data/old/examplezoo/fSfgraphviz.txt b/sourcecodes/data/old/examplezoo/fSfgraphviz.txt
deleted file mode 100644
index 701801c6..00000000
--- a/sourcecodes/data/old/examplezoo/fSfgraphviz.txt
+++ /dev/null
@@ -1,61 +0,0 @@
-digraph G {
-size="10,10";  ratio = fill;
-node [shape=square,width=1.5];
-feathers -> type;
-eggs -> hair;
-eggs -> feathers;
-eggs -> toothed;
-eggs -> backbone;
-eggs -> breathes;
-eggs -> legs;
-eggs -> tail;
-eggs -> catsize;
-milk -> hair;
-milk -> feathers;
-milk -> toothed;
-milk -> backbone;
-milk -> breathes;
-milk -> legs;
-milk -> tail;
-milk -> catsize;
-milk -> type;
-airborne -> eggs;
-airborne -> milk;
-airborne -> backbone;
-airborne -> breathes;
-airborne -> catsize;
-aquatic -> eggs;
-aquatic -> milk;
-aquatic -> breathes;
-aquatic -> fins;
-backbone -> hair;
-backbone -> feathers;
-backbone -> toothed;
-backbone -> fins;
-backbone -> legs;
-backbone -> tail;
-backbone -> type;
-breathes -> hair;
-breathes -> toothed;
-breathes -> backbone;
-breathes -> fins;
-breathes -> legs;
-breathes -> catsize;
-breathes -> type;
-venomous -> hair;
-venomous -> feathers;
-venomous -> eggs;
-venomous -> milk;
-venomous -> toothed;
-venomous -> backbone;
-venomous -> breathes;
-venomous -> fins;
-venomous -> legs;
-venomous -> tail;
-venomous -> catsize;
-legs -> type;
-domestic -> eggs;
-domestic -> milk;
-domestic -> fins;
-domestic -> tail;
-}
\ No newline at end of file
diff --git a/sourcecodes/data/old/examplezoo/fSfk.txt b/sourcecodes/data/old/examplezoo/fSfk.txt
deleted file mode 100644
index f599e28b..00000000
--- a/sourcecodes/data/old/examplezoo/fSfk.txt
+++ /dev/null
@@ -1 +0,0 @@
-10
diff --git a/sourcecodes/data/old/examplezoo/fSfmap.txt b/sourcecodes/data/old/examplezoo/fSfmap.txt
deleted file mode 100644
index 4a123441..00000000
--- a/sourcecodes/data/old/examplezoo/fSfmap.txt
+++ /dev/null
@@ -1,17 +0,0 @@
-hair	2	0.496921	1.425743
-feathers	2	0.400495	1.198020
-eggs	2	0.495325	1.584158
-milk	2	0.493522	1.405941
-airborne	2	0.427750	1.237624
-aquatic	2	0.481335	1.356436
-predator	2	0.499505	1.554455
-toothed	2	0.491512	1.603960
-backbone	2	0.384605	1.821782
-breathes	2	0.407844	1.792079
-venomous	2	0.271410	1.079208
-fins	6	0.376013	1.168317
-legs	2	1.253194	2.544554
-tail	2	0.439397	1.742574
-domestic	2	0.336552	1.128713
-catsize	7	0.498314	1.435644
-type	2	2.102709	2.831683
diff --git a/sourcecodes/data/old/examplezoo/fSfmapdata.txt b/sourcecodes/data/old/examplezoo/fSfmapdata.txt
deleted file mode 100644
index 19d91997..00000000
--- a/sourcecodes/data/old/examplezoo/fSfmapdata.txt
+++ /dev/null
@@ -1 +0,0 @@
-domestic	venomous	predator	aquatic	airborne	milk	eggs	breathes	catsize	backbone	tail	legs	fins	toothed	feathers	type	hair
diff --git a/sourcecodes/data/old/examplezoo/fSfname.txt b/sourcecodes/data/old/examplezoo/fSfname.txt
deleted file mode 100644
index c68267c4..00000000
--- a/sourcecodes/data/old/examplezoo/fSfname.txt
+++ /dev/null
@@ -1 +0,0 @@
-hair	feathers	eggs	milk	airborne	aquatic	predator	toothed	backbone	breathes	venomous	fins	legs	tail	domestic	catsize	type
diff --git a/sourcecodes/data/old/examplezoo/fSfnet_figure.txt b/sourcecodes/data/old/examplezoo/fSfnet_figure.txt
deleted file mode 100644
index 0c8f9428..00000000
--- a/sourcecodes/data/old/examplezoo/fSfnet_figure.txt
+++ /dev/null
@@ -1,130 +0,0 @@
-17
-1800	1200	
-domestic	43	0
-venomous	343	0
-predator	643	0
-aquatic	943	0
-airborne	1243	0
-milk	523	171
-eggs	1123	171
-breathes	643	343
-catsize	523	514
-backbone	1123	514
-tail	0	686
-legs	257	686
-fins	514	686
-toothed	771	686
-feathers	1029	686
-type	823	857
-hair	1286	686
-domestic	2
-250	150
-0
-4	6	7	11	13
-1	0.8672
-2	0.1328
-venomous	2
-250	150
-0
-11	6	7	8	9	10	11	12	13	14	15	17
-1	0.8860
-2	0.1140
-predator	2
-250	150
-0
-0
-1	0.4455
-2	0.5545
-aquatic	2
-250	150
-0
-4	6	7	8	13
-1	0.6726
-2	0.3274
-airborne	2
-250	150
-0
-5	6	7	8	9	10
-1	0.8149
-2	0.1851
-milk	2
-250	150
-4	1	2	4	5
-9	8	9	10	11	12	14	15	16	17
-1	0.4703
-2	0.5297
-eggs	2
-250	150
-4	1	2	4	5
-8	8	9	10	11	12	14	15	17
-1	0.4962
-2	0.5038
-breathes	2
-250	150
-5	2	4	5	6	7
-7	9	10	12	13	14	16	17
-1	0.1666
-2	0.8334
-catsize	2
-250	150
-5	2	5	6	7	8
-0
-1	0.4789
-2	0.5211
-backbone	2
-250	150
-5	2	5	6	7	8
-7	11	12	13	14	15	16	17
-1	0.1743
-2	0.8257
-tail	2
-250	150
-5	1	2	6	7	10
-0
-1	0.2426
-2	0.7574
-legs	6
-250	150
-5	2	6	7	8	10
-1	16
-1	0.1827
-2	0.2108
-3	0.4747
-4	0.0111
-5	0.0799
-6	0.0409
-fins	2
-250	150
-5	1	2	4	8	10
-0
-1	0.8751
-2	0.1249
-toothed	2
-250	150
-5	2	6	7	8	10
-0
-1	0.3799
-2	0.6201
-feathers	2
-250	150
-4	2	6	7	10
-1	16
-1	0.8693
-2	0.1307
-type	7
-250	150
-5	6	8	10	12	15
-0
-1	0.5297
-2	0.1307
-3	0.0476
-4	0.0854
-5	0.0323
-6	0.0578
-7	0.1165
-hair	2
-250	150
-5	2	6	7	8	10
-0
-1	0.4597
-2	0.5403
diff --git a/sourcecodes/data/old/examplezoo/fSfnnode.txt b/sourcecodes/data/old/examplezoo/fSfnnode.txt
deleted file mode 100644
index 98d9bcb7..00000000
--- a/sourcecodes/data/old/examplezoo/fSfnnode.txt
+++ /dev/null
@@ -1 +0,0 @@
-17
diff --git a/sourcecodes/data/old/examplezoo/fSfnrows.txt b/sourcecodes/data/old/examplezoo/fSfnrows.txt
deleted file mode 100644
index 257e5632..00000000
--- a/sourcecodes/data/old/examplezoo/fSfnrows.txt
+++ /dev/null
@@ -1 +0,0 @@
-102
diff --git a/sourcecodes/data/old/examplezoo/fSfparent.txt b/sourcecodes/data/old/examplezoo/fSfparent.txt
deleted file mode 100644
index 7ed6ff82..00000000
--- a/sourcecodes/data/old/examplezoo/fSfparent.txt
+++ /dev/null
@@ -1 +0,0 @@
-5
diff --git a/sourcecodes/data/old/examplezoo/fSfstructure_input.txt b/sourcecodes/data/old/examplezoo/fSfstructure_input.txt
deleted file mode 100644
index c49d600b..00000000
--- a/sourcecodes/data/old/examplezoo/fSfstructure_input.txt
+++ /dev/null
@@ -1,18 +0,0 @@
-hair	feathers	eggs	milk	airborne	aquatic	predator	toothed	backbone	breathes	venomous	fins	legs	tail	domestic	catsize	type	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	
-1	1	0	0	0	0	0	1	1	1	0	0	1	1	0	1	0	
-1	1	0	0	0	0	0	1	1	1	0	0	1	1	0	1	1	
-0	0	1	1	0	0	0	0	1	1	0	0	0	0	0	1	0	
-0	0	1	1	0	0	0	0	0	1	0	1	0	0	0	0	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-1	1	0	0	0	0	0	1	0	0	0	1	1	1	0	0	1	
-1	0	0	0	0	0	0	1	1	0	0	1	1	0	0	1	1	
-1	1	1	1	0	0	0	1	1	1	0	1	1	1	0	1	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	1	1	0	0	0	0	0	0	0	1	0	1	0	0	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
-0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
diff --git a/sourcecodes/data/old/examplezoo/fSfstructure_input_temp.txt b/sourcecodes/data/old/examplezoo/fSfstructure_input_temp.txt
deleted file mode 100644
index 8910aaee..00000000
--- a/sourcecodes/data/old/examplezoo/fSfstructure_input_temp.txt
+++ /dev/null
@@ -1,18 +0,0 @@
-hair	feathers	eggs	milk	airborne	aquatic	predator	toothed	backbone	breathes	venomous	fins	legs	tail	domestic	catsize	type	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	1.000000	
-1.000000	0.800011	0.000000	0.000000	0.000000	0.000000	0.000000	1.000000	1.000000	1.000000	0.000000	0.000000	1.000000	1.000000	0.000000	1.000000	0.000000	
-1.000000	1.000000	0.500003	0.000000	0.000000	0.000000	0.000000	1.000000	1.000000	1.000000	0.000000	0.000000	1.000000	1.000000	0.000000	1.000000	1.000000	
-0.000000	0.400004	1.000000	1.000000	0.000000	0.000000	0.000000	0.000000	1.000000	1.000000	0.000000	0.000000	0.000000	0.000000	0.000000	1.000000	0.000000	
-0.000000	0.000000	1.000000	1.000000	0.000000	0.000000	0.000000	0.000000	0.000000	1.000000	0.000000	1.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
-1.000000	1.000000	0.000000	0.000000	0.000000	0.000000	0.000000	1.000000	0.000000	0.000000	0.000000	1.000000	1.000000	1.000000	0.000000	0.000000	1.000000	
-0.800018	0.799985	0.000000	0.000000	0.000000	0.000000	0.000000	1.000000	1.000000	0.000000	0.000000	1.000000	1.000000	0.000000	0.000000	1.000000	1.000000	
-1.000000	1.000000	1.000000	1.000000	0.000000	0.000000	0.000000	1.000000	1.000000	1.000000	0.000000	1.000000	1.000000	1.000000	0.000000	1.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	1.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
-0.199982	0.000000	0.900015	0.900010	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	1.000000	0.000000	1.000000	0.000000	0.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
-0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	0.000000	
diff --git a/sourcecodes/data/old/examplezoo/fSfstructure_old.txt b/sourcecodes/data/old/examplezoo/fSfstructure_old.txt
deleted file mode 100644
index bf00f5d5..00000000
--- a/sourcecodes/data/old/examplezoo/fSfstructure_old.txt
+++ /dev/null
@@ -1,16 +0,0 @@
-feathers	0.8693	0.1307
-type	0.5297	0.1307	0.0476	0.0854	0.0323	0.0578	0.1165
-eggs	0.4962	0.5038
-hair	0.4597	0.5403
-toothed	0.3799	0.6201
-backbone	0.1743	0.8257
-breathes	0.1666	0.8334
-legs	0.1827	0.2108	0.4747	0.0111	0.0799	0.0409
-tail	0.2426	0.7574
-catsize	0.4789	0.5211
-milk	0.4703	0.5297
-airborne	0.8149	0.1851
-aquatic	0.6726	0.3274
-fins	0.8751	0.1249
-venomous	0.8860	0.1140
-domestic	0.8672	0.1328
diff --git a/sourcecodes/data/old/examplezoo/fSfthr.txt b/sourcecodes/data/old/examplezoo/fSfthr.txt
deleted file mode 100644
index aec258df..00000000
--- a/sourcecodes/data/old/examplezoo/fSfthr.txt
+++ /dev/null
@@ -1 +0,0 @@
-0.8
diff --git a/sourcecodes/data/old/examplezoo/fSftier.txt b/sourcecodes/data/old/examplezoo/fSftier.txt
deleted file mode 100644
index ca417b31..00000000
--- a/sourcecodes/data/old/examplezoo/fSftier.txt
+++ /dev/null
@@ -1 +0,0 @@
-4,Tier1,5,aquatic,airborne,venomous,predator,domestic,Tier2,4,eggs,milk,backbone,breathes,Tier3,7,catsize,tail,toothed,hair,feathers,fins,legs,Tier4,1,type,
\ No newline at end of file
diff --git a/sourcecodes/data/old/examplezoo/fSftype.txt b/sourcecodes/data/old/examplezoo/fSftype.txt
deleted file mode 100644
index 41c0f73e..00000000
--- a/sourcecodes/data/old/examplezoo/fSftype.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-hair	feathers	eggs	milk	airborne	aquatic	predator	toothed	backbone	breathes	venomous	fins	legs	tail	domestic	catsize	type
-2	2	2	2	2	2	2	2	2	2	2	2	6	2	2	2	7	
diff --git a/sourcecodes/data/old/examplezoo/fSfwhite.txt b/sourcecodes/data/old/examplezoo/fSfwhite.txt
deleted file mode 100644
index 83e81b8b..00000000
--- a/sourcecodes/data/old/examplezoo/fSfwhite.txt
+++ /dev/null
@@ -1 +0,0 @@
-From	To
diff --git a/sourcecodes/data/old/examplezoo/old/fSfrun_initialstructure.sh b/sourcecodes/data/old/examplezoo/old/fSfrun_initialstructure.sh
deleted file mode 100644
index f20a9a29..00000000
--- a/sourcecodes/data/old/examplezoo/old/fSfrun_initialstructure.sh
+++ /dev/null
@@ -1,38 +0,0 @@
-#!/bin/sh
-# script for execution of deployed applications
-#
-# Sets up the MCR environment for the current $ARCH and executes 
-# the specified command.
-#
-exe_name=$0
-exe_dir=`dirname "$0"`
-echo "------------------------------------------"
-if [ "x$1" = "x" ]; then
-  echo Usage:
-  echo    $0 \<deployedMCRroot\> args
-else
-  echo Setting up environment variables
-  MCRROOT="$1"
-  echo ---
-  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
-  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
-  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
-	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
-  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
-  export LD_LIBRARY_PATH;
-  export XAPPLRESDIR;
-  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
-  shift 1
-  args=
-  while [ $# -gt 0 ]; do
-      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
-      args="${args} ${token}" 
-      shift
-  done
-  "${exe_dir}"/initialstructure fSf
-fi
-exit
diff --git a/sourcecodes/data/old/examplezoo/standardized_data.txt b/sourcecodes/data/old/examplezoo/standardized_data.txt
deleted file mode 100644
index 0975061e..00000000
--- a/sourcecodes/data/old/examplezoo/standardized_data.txt
+++ /dev/null
@@ -1,102 +0,0 @@
-domestic	venomous	predator	aquatic	airborne	milk	eggs	breathes	catsize	backbone	tail	legs	fins	toothed	feathers	type	hair	
-1	1	2	2	1	1	2	1	1	2	2	1	2	2	1	4	1
-2	1	1	2	1	1	2	1	1	2	2	1	2	2	1	4	1
-1	1	2	2	1	1	2	1	1	2	2	1	2	2	1	4	1
-1	1	2	2	1	1	2	1	1	2	2	1	2	2	1	4	1
-1	1	2	1	1	1	2	1	1	1	1	1	1	1	1	7	1
-1	1	2	2	1	1	2	1	2	2	2	1	2	2	1	4	1
-1	1	2	2	1	2	1	2	2	2	2	1	2	2	1	1	1
-1	1	1	2	1	1	2	1	1	2	2	1	2	2	1	4	1
-1	1	2	2	1	1	2	1	1	2	2	1	2	2	1	4	1
-1	1	2	2	1	1	2	1	2	2	2	1	2	2	1	4	1
-1	1	2	2	1	1	2	1	1	2	2	1	2	2	1	4	1
-1	2	2	1	1	1	2	2	1	2	2	1	1	2	1	3	1
-1	1	2	2	1	2	1	2	2	2	2	1	2	2	1	1	1
-1	1	1	2	1	1	2	1	1	2	2	1	2	2	1	4	1
-1	1	2	2	1	2	1	2	2	2	1	1	2	2	1	1	2
-1	2	2	2	1	1	1	1	1	2	2	1	1	2	1	3	1
-1	2	2	2	1	1	2	1	1	1	1	1	1	1	1	7	1
-1	1	2	1	1	1	2	2	1	2	2	1	1	2	1	3	1
-1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	7	1
-1	1	1	2	1	1	2	1	1	2	2	1	2	2	1	4	1
-1	2	2	2	1	1	2	1	2	2	2	1	2	2	1	4	1
-1	1	2	2	1	1	2	1	2	2	2	1	2	2	1	4	1
-1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	7	1
-2	1	1	1	2	1	2	2	1	2	2	2	1	1	2	2	1
-1	1	2	1	2	1	2	2	1	2	2	2	1	1	2	2	1
-2	1	1	1	2	1	2	2	1	2	2	2	1	1	2	2	1
-1	1	1	2	2	1	2	2	1	2	2	2	1	1	2	2	1
-1	1	1	1	2	1	2	2	2	2	2	2	1	1	2	2	1
-1	1	1	1	2	2	1	2	1	2	2	2	1	2	1	1	2
-2	1	2	1	1	2	1	2	2	2	1	2	1	2	1	1	2
-1	1	1	1	1	2	1	2	2	2	1	2	1	2	1	1	2
-1	1	2	2	2	1	2	2	1	2	2	2	1	1	2	2	1
-1	1	2	1	2	1	2	2	1	2	2	2	1	1	2	2	1
-1	1	2	1	1	1	2	2	1	2	2	2	1	1	2	2	1
-1	1	1	1	2	1	2	2	1	2	2	2	1	1	2	2	1
-1	1	1	1	1	1	2	2	2	2	2	2	1	1	2	2	1
-2	1	1	1	2	1	2	2	1	2	2	2	1	1	2	2	1
-1	1	2	2	1	1	2	2	2	2	2	2	1	1	2	2	1
-1	1	1	1	2	1	2	2	1	2	2	2	1	1	2	2	1
-1	1	2	1	1	1	2	2	2	2	2	2	1	1	2	2	1
-1	1	2	2	1	2	1	2	2	2	2	2	2	2	1	1	2
-1	1	2	2	2	1	2	2	1	2	2	2	1	1	2	2	1
-1	1	2	2	2	1	2	2	1	2	2	2	1	1	2	2	1
-1	1	1	1	2	1	2	2	1	2	2	2	1	1	2	2	1
-1	1	1	1	1	2	1	2	1	2	2	2	1	2	1	1	2
-1	1	1	2	2	1	2	2	2	2	2	2	1	1	2	2	1
-1	1	1	1	2	2	1	2	1	2	2	2	1	2	1	1	2
-1	1	2	1	2	1	2	2	2	2	2	2	1	1	2	2	1
-1	1	1	1	1	2	1	2	2	2	2	2	1	2	1	1	2
-1	1	1	1	2	1	2	2	1	2	2	2	1	1	2	2	1
-1	1	2	1	1	2	1	2	2	2	1	3	1	2	1	1	2
-1	1	1	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	2	1	1	2	1	2	2	2	1	3	1	2	1	1	2
-1	1	2	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	1	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-2	1	1	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-2	1	1	1	1	2	1	2	1	2	1	3	1	2	1	1	2
-1	1	2	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	2	2	1	1	2	1	1	1	1	3	1	1	1	7	1
-1	1	1	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	1	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	2	2	1	1	2	2	1	2	1	3	1	2	1	5	1
-1	2	2	2	1	1	2	2	1	2	1	3	1	2	1	5	1
-1	1	1	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-2	1	1	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-2	1	1	1	1	2	1	2	1	2	2	3	1	2	1	1	2
-1	1	1	1	1	2	1	2	1	2	2	3	1	2	1	1	2
-1	1	2	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	2	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	2	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	2	2	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	2	1	1	2	1	2	1	2	2	3	1	2	1	1	2
-1	1	2	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	2	2	1	1	2	2	1	2	2	3	1	2	1	5	1
-1	1	2	1	1	2	1	2	1	2	2	3	1	2	1	1	2
-1	1	1	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	2	2	1	2	2	2	2	2	2	3	1	1	1	1	2
-1	1	2	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-2	1	1	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	2	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-2	1	2	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	2	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-2	1	1	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	1	2	1	1	2	2	1	2	1	3	1	2	1	5	1
-1	1	1	1	1	1	2	2	2	2	2	3	1	1	1	3	1
-1	1	2	1	1	1	2	2	1	2	2	3	1	2	1	3	1
-1	1	1	1	1	2	1	2	1	2	2	3	1	2	1	1	2
-1	1	2	1	1	2	1	2	2	2	2	3	1	2	1	1	2
-1	1	2	2	1	1	2	1	1	1	1	4	1	1	1	7	1
-1	1	2	2	1	1	2	1	1	1	1	5	1	1	1	7	1
-1	1	1	1	1	1	2	2	1	1	1	5	1	1	1	6	1
-1	1	1	1	2	1	2	2	1	1	1	5	1	1	1	6	1
-2	2	1	1	2	1	2	2	1	1	1	5	1	1	1	6	2
-1	1	1	1	2	1	2	2	1	1	1	5	1	1	1	6	2
-1	1	2	1	2	1	2	2	1	1	1	5	1	1	1	6	1
-1	1	2	2	1	1	2	1	1	1	1	5	1	1	1	7	1
-1	1	1	1	2	1	2	2	1	1	1	5	1	1	1	6	2
-1	1	1	1	1	1	2	2	1	1	1	5	1	1	1	6	1
-1	2	1	1	2	1	2	2	1	1	1	5	1	1	1	6	2
-1	1	2	2	1	1	2	1	2	1	1	6	1	1	1	7	1
-1	2	2	1	1	1	1	2	1	1	2	6	1	1	1	7	1