Resolved merge conflict

21 files changed, 0 insertions, 3008 deletions

diff --git a/sourcecodes/data/example_chr2_spleen/cuLban.txt b/sourcecodes/data/example_chr2_spleen/cuLban.txt
deleted file mode 100644
index fdd12dda..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLban.txt
+++ /dev/null
@@ -1,51 +0,0 @@
-From	To
-Ifih1	rs3664317
-Oas1a	rs3664317
-Parp9	rs3664317
-Dhx58	rs3664317
-Cd1d1	rs3664317
-Irf7	rs3664317
-Oas3	rs3664317
-Pml	rs3664317
-Mx1	rs3664317
-Ifit1	rs3664317
-Trim25	rs3664317
-Oas1g	rs3664317
-Pglyrp3	rs3664317
-Ifih1	rs3664317
-Oas1a	Ifih1
-Parp9	Ifih1
-Dhx58	Ifih1
-Cd1d1	Ifih1
-Irf7	Ifih1
-Oas3	Ifih1
-Pml	Ifih1
-Mx1	Ifih1
-Ifit1	Ifih1
-Trim25	Ifih1
-Oas1g	Ifih1
-Pglyrp3	Ifih1
-Oas1a	rs3664317
-Parp9	rs3664317
-Dhx58	rs3664317
-Cd1d1	rs3664317
-Irf7	rs3664317
-Oas3	rs3664317
-Pml	rs3664317
-Mx1	rs3664317
-Ifit1	rs3664317
-Trim25	rs3664317
-Oas1g	rs3664317
-Pglyrp3	rs3664317
-Oas1a	Ifih1
-Parp9	Ifih1
-Dhx58	Ifih1
-Cd1d1	Ifih1
-Irf7	Ifih1
-Oas3	Ifih1
-Pml	Ifih1
-Mx1	Ifih1
-Ifit1	Ifih1
-Trim25	Ifih1
-Oas1g	Ifih1
-Pglyrp3	Ifih1
diff --git a/sourcecodes/data/example_chr2_spleen/cuLcontinuous_input.txt b/sourcecodes/data/example_chr2_spleen/cuLcontinuous_input.txt
deleted file mode 100644
index ca8ea1e5..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLcontinuous_input.txt
+++ /dev/null
@@ -1,76 +0,0 @@
-rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1
-2	1	1	1	1	1	1	1	1	1	1	1	1	1
-1	8.34	9.812	8.774	9.79	9.663	8.27	11.036	7.284	8.286	10.395	8.521	6.186	8.83
-1	8.368	9.738	8.566	9.144	9.484	8.818	11.03	6.977	8.294	10.076	8.529	5.968	8.828
-1	8.178	9.57	8.726	9.575	10.106	8.99	10.878	7.205	8.676	10.036	8.61	5.976	9.024
-1	8.116	9.901	8.904	9.959	9.793	8.336	11.105	7.598	8.316	10.292	8.401	5.814	8.836
-2	8.099	9.68	8.876	10.116	9.771	8.379	11.028	7.438	8.541	10.215	8.32	5.917	9.073
-1	8.262	9.59	8.24	10.088	8.938	7.832	10.486	6.752	7.825	9.908	8.196	6.15	8.446
-1	7.915	9.415	8.308	9.707	9.12	8.702	11.102	7.208	8.243	10.034	7.897	6.06	8.892
-2	8.565	10.002	8.96	9.779	10.322	9.24	11.278	7.644	8.893	10.42	8.773	5.914	9.407
-1	8.189	9.774	8.541	9.939	9.134	7.819	10.766	7.122	8.352	10.113	8.492	6.269	9.055
-1	8.476	9.954	8.908	9.476	9.92	8.764	11.134	7.859	8.788	10.17	8.862	6.226	9.17
-2	8.119	9.946	8.876	9.578	10.02	8.734	11.244	7.85	8.838	10.557	8.56	5.98	9.353
-2	8.305	9.713	8.972	9.789	9.839	8.804	10.948	7.682	8.896	10.181	8.854	5.979	9.567
-2	8.654	10	9.306	9.439	10.457	9.223	10.922	7.082	8.942	10.131	9.162	6.01	9.74
-1	8.105	9.748	8.725	10.119	9.782	8.575	11.113	7.63	8.674	10.355	8.59	6.279	8.908
-1	8.247	9.715	8.829	9.646	9.953	9.668	11.112	7.384	9.221	10.19	8.64	6	9.552
-1	8.511	9.994	9.014	9.89	10.266	8.444	10.599	7.331	9.153	10.012	8.837	6.148	9.023
-2	8.947	10.28	9.483	9.398	11.23	9.86	11.324	8.006	9.772	10.524	9.587	5.865	10.067
-1	8.526	9.685	8.921	9.7	10.126	9.373	11.121	7.497	9.003	10.357	8.156	6.334	9.678
-2	8.06	9.745	9.092	9.278	10.231	8.976	10.998	7.578	9.145	10.283	8.611	6.168	9.413
-2	7.93	9.728	8.694	9.512	9.826	9.016	11.276	7.604	8.767	10.378	8.577	5.963	9.264
-2	8.511	9.686	9.014	8.982	10.508	10.108	11.304	7.441	9.133	10.341	9.04	6.2	9.974
-2	8.645	9.997	8.97	9.443	10.393	9.302	11.409	7.785	8.894	10.552	9.051	5.997	9.412
-2	8.293	9.802	9.001	9.524	10.156	9.263	11.212	7.772	8.581	10.433	8.514	6.093	9.177
-1	7.781	9.712	8.97	9.375	10.12	9.484	11.317	7.347	8.972	10.393	8.352	6.193	9.587
-2	8.465	9.88	8.913	9.816	9.965	8.852	11.138	7.537	8.625	10.426	8.617	6.044	9.556
-2	8.657	10.026	9.189	9.691	10.302	9.268	11.194	7.634	9.143	10.378	9.05	6.067	9.679
-2	7.634	9.606	8.36	9.465	8.41	8.605	11.183	6.942	8.174	9.952	7.478	6.09	9.535
-1	7.669	9.494	8.779	9.552	9.362	8.52	11.024	7.131	8.378	10.391	8.114	6.07	8.851
-2	8.618	10.212	9.433	9.672	10.442	9.21	11.328	8.045	9.322	10.5	9.128	5.994	9.656
-2	8.731	10.27	9.342	9.43	10.697	10.117	11.286	7.749	9.734	10.464	9.322	6.156	9.876
-1	7.554	9.524	8.759	9.93	9.52	8.279	10.82	7.32	8.316	10.31	8.186	6.068	9.046
-1	8.262	9.677	8.75	9.444	10.052	8.634	10.888	7.32	8.562	9.893	8.644	6.212	8.918
-1	7.823	9.628	8.66	9.529	9.578	8.736	11.206	7.171	8.408	10.062	8.111	5.838	9.033
-1	8.28	9.572	8.784	9.428	9.862	9.424	11.27	7.288	8.505	10.174	8.642	6.022	9.313
-2	9.09	10.053	9.599	9.469	11.004	9.882	11.436	8.521	9.814	10.562	9.704	6.044	10.061
-1	8.446	9.989	9.297	9.688	10.577	9.129	11.102	7.718	9.484	10.231	9.072	6.17	9.21
-1	8.668	9.858	9.195	9.385	10.695	9.249	11.028	7.765	9.367	10.319	9.179	6.136	9.563
-2	8.574	10.059	9.281	9.233	10.508	9.247	11.145	8.138	9.505	10.402	9.192	5.992	9.848
-2	8.523	10.052	9.131	9.507	10.418	9.413	11.187	7.641	9.304	10.465	9.063	6.095	9.733
-1	7.987	9.748	8.766	9.578	9.781	8.482	11.279	7.52	8.364	10.141	8.207	6.192	9.133
-2	8.466	9.429	8.946	9.395	9.715	9.071	11.388	7.592	8.078	10.32	8.326	6.108	9.021
-1	7.668	9.694	8.493	10.112	9.561	8.394	10.922	7.26	8.19	10.27	7.916	5.892	8.974
-2	8.379	10.037	9.155	9.683	10.281	9.2	10.913	7.173	9.404	10.381	9.097	6.099	9.714
-2	7.805	9.654	8.454	9.198	10.065	9.468	11.217	6.917	8.43	10.459	8.11	6.068	9.068
-1	7.981	9.8	8.553	9.946	9.862	8.901	11.085	7.214	8.393	10.373	8.19	6.05	9.015
-1	7.746	9.688	8.578	9.901	9.358	7.866	10.928	7.354	7.929	10.233	8.066	5.754	8.883
-1	7.997	9.859	8.795	9.867	9.817	8.734	11.109	7.416	8.67	10.247	8.176	6.143	9.081
-1	8.674	9.689	9.06	9.81	10.544	8.995	11.189	7.781	9.219	10.07	8.98	5.992	9.143
-1	8.088	9.49	8.676	9.456	10.184	8.737	10.998	7.222	8.538	10.192	8.441	6.147	8.55
-1	8.001	9.801	8.669	9.977	9.383	8.274	11.055	7.231	7.913	10.272	8.277	5.931	9.009
-2	8.218	9.458	8.781	9.214	9.66	8.87	10.738	7.241	8.289	10.029	8.612	6.125	9.38
-1	7.684	9.56	8.75	10.077	9.686	8.27	11.102	7.206	8.13	10.212	8.07	6.018	8.984
-2	8.326	9.696	8.88	9.714	10.014	9.08	11.055	7.256	8.494	10.054	8.63	6.177	9.162
-2	8.906	10.106	9.412	9.704	11.06	9.854	11.335	7.799	10.103	10.471	9.25	6.033	9.97
-1	8.073	9.793	8.626	9.879	9.262	8.408	10.844	7.108	8.368	9.959	8.261	6.052	8.916
-2	8.527	10.026	9.143	9.244	10.597	9.566	11.108	7.778	9.748	10.351	9.153	6.055	9.698
-2	8.614	10.05	9.202	9.508	10.66	9.63	11.156	7.758	9.789	10.324	9.068	6.15	9.948
-2	8.522	10.158	8.992	9.684	9.992	8.55	11.125	7.914	8.976	10.311	8.574	5.889	9.566
-1	8.086	9.6	8.522	9.544	9.641	8.514	10.99	7.386	8.506	10.194	8.234	6.02	8.736
-1	7.873	9.596	8.452	9.422	9.278	8.509	10.958	7.057	8.081	9.981	7.969	6.136	8.958
-2	8.371	9.99	8.949	9.931	10.195	8.935	10.83	7.694	9.183	10.493	9.124	6.128	9.396
-2	8.476	9.982	9.115	9.639	10.465	9.833	11.105	8.058	9.9	10.351	9.182	6.05	9.884
-1	8.512	9.995	8.846	9.951	9.561	8.558	10.769	7.584	8.901	10.139	8.769	5.959	9.203
-1	8.358	9.858	8.99	9.981	10.123	9.368	10.989	7.463	9.327	9.93	8.54	6.02	9.543
-1	8.23	9.614	8.806	9.919	9.939	9.108	11.184	7.766	8.793	10.174	8.605	5.972	9.068
-2	8.238	9.802	8.926	9.595	10.062	8.77	11.202	7.712	9.131	10.34	8.57	6.05	9.464
-1	8.533	10.108	9.083	10.214	10.514	8.463	11.008	7.356	9.344	10.196	8.736	6.262	9.257
-1	7.866	9.444	8.223	9.865	8.95	8.539	10.935	6.754	7.748	10.177	7.826	6.29	8.716
-2	8.888	10.031	9.158	9.407	10.8	9.547	11.238	7.659	9.602	10.398	9.337	6.028	9.529
-1	8.026	9.682	8.398	9.824	9.202	8.041	10.703	7.322	8.352	10.209	8.196	6.009	9.001
-2	8.974	10.071	9.451	9.348	11.061	9.686	11.255	8.077	10.101	10.323	9.557	6.006	10.072
-1	8.181	9.432	9.045	9.544	10.651	9.18	10.832	7.419	8.742	9.818	8.546	6.33	9.201
-1	8.137	9.676	9.024	9.37	10.206	9.944	10.985	7.226	8.9	10.362	8.918	6.352	9.367
-
diff --git a/sourcecodes/data/example_chr2_spleen/cuLgraphviz.txt b/sourcecodes/data/example_chr2_spleen/cuLgraphviz.txt
deleted file mode 100644
index 824e26d5..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLgraphviz.txt
+++ /dev/null
@@ -1,32 +0,0 @@
-digraph G {
-size="10,10";  ratio = fill;
-node [shape=square,width=1.5];
-rs3664317 -> Dhx58;
-rs3664317 -> Cd1d1;
-rs3664317 -> Ifit1;
-rs3664317 -> Oas1g;
-rs3664317 -> Ifih1;
-Parp9 -> Oas1a;
-Dhx58 -> Irf7;
-Dhx58 -> Mx1;
-Dhx58 -> Ifit1;
-Dhx58 -> Trim25;
-Dhx58 -> Oas1g;
-Cd1d1 -> Oas3;
-Cd1d1 -> Trim25;
-Cd1d1 -> Pglyrp3;
-Oas3 -> Pglyrp3;
-Pml -> Oas3;
-Pml -> Pglyrp3;
-Ifit1 -> Irf7;
-Ifit1 -> Mx1;
-Trim25 -> Parp9;
-Trim25 -> Pml;
-Trim25 -> Pglyrp3;
-Ifih1 -> Parp9;
-Ifih1 -> Dhx58;
-Ifih1 -> Cd1d1;
-Ifih1 -> Oas3;
-Ifih1 -> Ifit1;
-Ifih1 -> Trim25;
-}
\ No newline at end of file
diff --git a/sourcecodes/data/example_chr2_spleen/cuLk.txt b/sourcecodes/data/example_chr2_spleen/cuLk.txt
deleted file mode 100644
index 29d6383b..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLk.txt
+++ /dev/null
@@ -1 +0,0 @@
-100
diff --git a/sourcecodes/data/example_chr2_spleen/cuLmap.txt b/sourcecodes/data/example_chr2_spleen/cuLmap.txt
deleted file mode 100644
index 9ca8e641..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLmap.txt
+++ /dev/null
@@ -1,14 +0,0 @@
-rs3664317	0.501140	1.452055
-Oas1a	0.347301	8.281466
-Parp9	0.216211	9.804164
-Dhx58	0.302026	8.891247
-Cd1d1	0.268738	9.643644
-Irf7	0.548579	10.009315
-Oas3	0.548788	8.957397
-Pml	0.190985	11.075425
-Mx1	0.336795	7.483137
-Ifit1	0.569192	8.828521
-Trim25	0.176657	10.255192
-Oas1g	0.458134	8.632151
-Pglyrp3	0.123345	6.070877
-Ifih1	0.387383	9.298137
diff --git a/sourcecodes/data/example_chr2_spleen/cuLmapdata.txt b/sourcecodes/data/example_chr2_spleen/cuLmapdata.txt
deleted file mode 100644
index 64d3fc62..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLmapdata.txt
+++ /dev/null
@@ -1 +0,0 @@
-rs3664317	Ifih1	Cd1d1	Dhx58	Oas1g	Trim25	Pml	Oas3	Pglyrp3	Parp9	Oas1a	Ifit1	Mx1	Irf7
diff --git a/sourcecodes/data/example_chr2_spleen/cuLname.txt b/sourcecodes/data/example_chr2_spleen/cuLname.txt
deleted file mode 100644
index 1cc6fe19..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLname.txt
+++ /dev/null
@@ -1 +0,0 @@
-rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1
diff --git a/sourcecodes/data/example_chr2_spleen/cuLnet_figure.txt b/sourcecodes/data/example_chr2_spleen/cuLnet_figure.txt
deleted file mode 100644
index db0c7cf0..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLnet_figure.txt
+++ /dev/null
@@ -1,1387 +0,0 @@
-14
-1200	1400	
-rs3664317	360	0
-Ifih1	480	175
-Cd1d1	160	350
-Dhx58	560	350
-Oas1g	180	525
-Trim25	480	525
-Pml	0	700
-Oas3	280	875
-Pglyrp3	360	1050
-Parp9	240	700
-Oas1a	680	875
-Ifit1	780	525
-Mx1	480	700
-Irf7	720	700
-rs3664317	2
-250	150
-0
-5	2	3	4	5	12
-1	0.5479
-2	0.4521
-Ifih1	1
-250	150
-1	1
-6	3	4	6	8	10	12
-8.0586	0.0023
-8.0826	0.0028
-8.1066	0.0034
-8.1306	0.0041
-8.1546	0.0050
-8.1787	0.0060
-8.2027	0.0071
-8.2267	0.0085
-8.2507	0.0101
-8.2747	0.0119
-8.2987	0.0140
-8.3227	0.0164
-8.3467	0.0192
-8.3707	0.0223
-8.3947	0.0259
-8.4187	0.0299
-8.4427	0.0343
-8.4667	0.0393
-8.4908	0.0449
-8.5148	0.0510
-8.5388	0.0578
-8.5628	0.0652
-8.5868	0.0733
-8.6108	0.0820
-8.6348	0.0914
-8.6588	0.1015
-8.6828	0.1124
-8.7068	0.1238
-8.7308	0.1359
-8.7548	0.1487
-8.7788	0.1620
-8.8029	0.1758
-8.8269	0.1900
-8.8509	0.2046
-8.8749	0.2195
-8.8989	0.2345
-8.9229	0.2496
-8.9469	0.2647
-8.9709	0.2795
-8.9949	0.2941
-9.0189	0.3082
-9.0429	0.3218
-9.0669	0.3347
-9.0909	0.3467
-9.1150	0.3578
-9.1390	0.3678
-9.1630	0.3766
-9.1870	0.3842
-9.2110	0.3903
-9.2350	0.3951
-9.2590	0.3984
-9.2830	0.4001
-9.3070	0.4003
-9.3310	0.3990
-9.3550	0.3961
-9.3790	0.3917
-9.4030	0.3859
-9.4271	0.3787
-9.4511	0.3702
-9.4751	0.3605
-9.4991	0.3497
-9.5231	0.3379
-9.5471	0.3252
-9.5711	0.3118
-9.5951	0.2978
-9.6191	0.2834
-9.6431	0.2685
-9.6671	0.2535
-9.6911	0.2384
-9.7151	0.2234
-9.7392	0.2084
-9.7632	0.1938
-9.7872	0.1794
-9.8112	0.1655
-9.8352	0.1521
-9.8592	0.1392
-9.8832	0.1269
-9.9072	0.1153
-9.9312	0.1043
-9.9552	0.0940
-9.9792	0.0844
-10.0032	0.0755
-10.0272	0.0672
-10.0513	0.0597
-10.0753	0.0527
-10.0993	0.0464
-10.1233	0.0407
-10.1473	0.0356
-10.1713	0.0310
-10.1953	0.0269
-10.2193	0.0232
-10.2433	0.0200
-10.2673	0.0171
-10.2913	0.0146
-10.3153	0.0124
-10.3393	0.0105
-10.3634	0.0089
-10.3874	0.0075
-10.4114	0.0063
-10.4354	0.0052
-10.4594	0.0043
-Cd1d1	1
-250	150
-2	1	2
-3	6	8	9
-8.7133	0.0010
-8.7310	0.0012
-8.7487	0.0015
-8.7663	0.0019
-8.7840	0.0023
-8.8017	0.0029
-8.8194	0.0035
-8.8371	0.0043
-8.8548	0.0052
-8.8725	0.0064
-8.8902	0.0077
-8.9079	0.0092
-8.9256	0.0110
-8.9433	0.0131
-8.9610	0.0156
-8.9787	0.0184
-8.9964	0.0216
-9.0141	0.0253
-9.0318	0.0295
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-1	11
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-Oas1a	1
-250	150
-1	10
-0
-7.2067	0.0034
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-9.4150	0.0020
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-Ifit1	1
-250	150
-3	1	2	4
-2	13	14
-7.1788	0.0063
-7.2137	0.0075
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-7.3185	0.0124
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-10.2530	0.0181
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-10.3229	0.0133
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-10.4277	0.0081
-10.4626	0.0068
-10.4975	0.0057
-10.5325	0.0048
-10.5674	0.0040
-10.6023	0.0033
-10.6373	0.0027
-10.6722	0.0023
-Mx1	1
-250	150
-2	4	12
-0
-6.4152	0.0028
-6.4396	0.0035
-6.4641	0.0043
-6.4885	0.0053
-6.5129	0.0066
-6.5373	0.0081
-6.5618	0.0098
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-8.6135	0.0015
-8.6380	0.0012
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-Irf7	1
-250	150
-2	4	12
-0
-7.8614	0.0002
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-11.0343	0.0714
-11.0735	0.0625
-11.1127	0.0544
-11.1518	0.0472
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-11.5044	0.0104
-11.5435	0.0086
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-11.6611	0.0047
-11.7002	0.0038
-11.7394	0.0030
-11.7786	0.0024
diff --git a/sourcecodes/data/example_chr2_spleen/cuLnet_figure_new.txt b/sourcecodes/data/example_chr2_spleen/cuLnet_figure_new.txt
deleted file mode 100644
index 7f631ad5..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLnet_figure_new.txt
+++ /dev/null
@@ -1,1288 +0,0 @@
-2	
-14
-1200	1400	
-rs3664317	360	0
-Ifih1	480	175
-Cd1d1	160	350
-Dhx58	560	350
-Oas1g	180	525
-Trim25	480	525
-Pml	0	700
-Oas3	280	875
-Pglyrp3	360	1050
-Parp9	240	700
-Oas1a	680	875
-Ifit1	780	525
-Mx1	480	700
-Irf7	720	700
-rs3664317	2
-250	150
-0
-5	2	3	4	5	12
-1	0.9980
-2	0.0020
-Ifih1	1
-250	150
-1	1
-6	3	4	6	8	10	12
--3.3510	1.0000
-Cd1d1	1
-250	150
-2	1	2
-3	6	8	9
--3.4620	0.0000
--3.3962	0.0000
--3.3304	0.0000
--3.2645	0.0000
--3.1987	0.0000
--3.1328	0.0000
--3.0670	0.0000
--3.0011	0.0000
--2.9353	0.0000
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--2.0135	0.0012
--1.9476	0.0016
--1.8818	0.0020
--1.8159	0.0026
--1.7501	0.0032
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--1.0258	0.0300
--0.9600	0.0356
--0.8941	0.0419
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--0.0382	0.2147
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-Dhx58	1
-250	150
-2	1	2
-5	5	6	12	13	14
--3.2125	0.2772
--3.1470	0.3638
--3.0814	0.4631
--3.0159	0.5716
--2.9503	0.6843
--2.8848	0.7945
--2.8192	0.8946
--2.7536	0.9769
--2.6881	1.0347
--2.6225	1.0628
--2.5570	1.0587
--2.4914	1.0228
--2.4258	0.9583
--2.3603	0.8708
--2.2947	0.7674
--2.2292	0.6559
--2.1636	0.5437
--2.0980	0.4371
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--2.8377	0.1338
--2.7735	0.1522
--2.7093	0.1720
--2.6450	0.1932
--2.5808	0.2155
--2.5166	0.2388
--2.4524	0.2629
--2.3881	0.2875
--2.3239	0.3124
--2.2597	0.3371
--2.1955	0.3615
--2.1312	0.3850
--2.0670	0.4074
--2.0028	0.4282
--1.9385	0.4472
--1.8743	0.4639
--1.8101	0.4780
--1.7459	0.4894
--1.6816	0.4977
--1.6174	0.5029
--1.5532	0.5047
--1.4890	0.5032
--1.4247	0.4985
--1.3605	0.4905
--1.2963	0.4795
--1.2320	0.4656
--1.1678	0.4492
--1.1036	0.4304
--1.0394	0.4098
--0.9751	0.3876
--0.9109	0.3642
--0.8467	0.3399
--0.7825	0.3152
--0.7182	0.2903
--0.6540	0.2656
--0.5898	0.2415
--0.5256	0.2181
--0.4613	0.1956
--0.3971	0.1744
--0.3329	0.1544
--0.2686	0.1358
--0.2044	0.1186
--0.1402	0.1030
--0.0760	0.0888
--0.0117	0.0761
-0.0525	0.0647
-0.1167	0.0547
-0.1809	0.0459
-0.2452	0.0383
-0.3094	0.0318
-0.3736	0.0262
-0.4378	0.0214
-0.5021	0.0174
-0.5663	0.0140
-0.6305	0.0113
-0.6948	0.0090
-0.7590	0.0071
-0.8232	0.0056
-0.8874	0.0044
-0.9517	0.0034
-1.0159	0.0026
-1.0801	0.0020
-1.1443	0.0015
-1.2086	0.0011
-1.2728	0.0009
-1.3370	0.0006
-1.4012	0.0005
-1.4655	0.0003
-1.5297	0.0003
-1.5939	0.0002
-1.6582	0.0001
-1.7224	0.0001
-1.7866	0.0001
-1.8508	0.0000
-1.9151	0.0000
-1.9793	0.0000
-2.0435	0.0000
-2.1077	0.0000
-2.1720	0.0000
-2.2362	0.0000
-2.3004	0.0000
-2.3646	0.0000
-2.4289	0.0000
-2.4931	0.0000
-2.5573	0.0000
-2.6216	0.0000
-2.6858	0.0000
-2.7500	0.0000
-2.8142	0.0000
-2.8785	0.0000
-2.9427	0.0000
-3.0069	0.0000
-3.0711	0.0000
-3.1354	0.0000
-3.1996	0.0000
-3.2638	0.0000
-3.3280	0.0000
-Ifit1	1
-250	150
-3	1	2	4
-2	13	14
--2.8983	0.9160
--2.8370	1.0549
--2.7756	1.1688
--2.7142	1.2459
--2.6528	1.2777
--2.5915	1.2606
--2.5301	1.1965
--2.4687	1.0926
--2.4073	0.9599
--2.3460	0.8113
--2.2846	0.6598
--2.2232	0.5161
--2.1618	0.3885
--2.1005	0.2813
--2.0391	0.1960
--1.9777	0.1313
--1.9164	0.0847
--1.8550	0.0525
--1.7936	0.0313
--1.7322	0.0180
--1.6709	0.0099
--1.6095	0.0053
--1.5481	0.0027
--1.4867	0.0013
--1.4254	0.0006
--1.3640	0.0003
--1.3026	0.0001
--1.2412	0.0001
--1.1799	0.0000
--1.1185	0.0000
--1.0571	0.0000
--0.9957	0.0000
--0.9344	0.0000
--0.8730	0.0000
--0.8116	0.0000
--0.7502	0.0000
--0.6889	0.0000
--0.6275	0.0000
--0.5661	0.0000
--0.5047	0.0000
--0.4434	0.0000
--0.3820	0.0000
--0.3206	0.0000
--0.2592	0.0000
--0.1979	0.0000
--0.1365	0.0000
--0.0751	0.0000
--0.0137	0.0000
-0.0476	0.0000
-0.1090	0.0000
-0.1704	0.0000
-0.2318	0.0000
-0.2931	0.0000
-0.3545	0.0000
-0.4159	0.0000
-0.4773	0.0000
-0.5386	0.0000
-0.6000	0.0000
-0.6614	0.0000
-0.7228	0.0000
-0.7841	0.0000
-0.8455	0.0000
-0.9069	0.0000
-0.9682	0.0000
-1.0296	0.0000
-1.0910	0.0000
-1.1524	0.0000
-1.2137	0.0000
-1.2751	0.0000
-1.3365	0.0000
-1.3979	0.0000
-1.4592	0.0000
-1.5206	0.0000
-1.5820	0.0000
-1.6434	0.0000
-1.7047	0.0000
-1.7661	0.0000
-1.8275	0.0000
-1.8889	0.0000
-1.9502	0.0000
-2.0116	0.0000
-2.0730	0.0000
-2.1344	0.0000
-2.1957	0.0000
-2.2571	0.0000
-2.3185	0.0000
-2.3799	0.0000
-2.4412	0.0000
-2.5026	0.0000
-2.5640	0.0000
-2.6254	0.0000
-2.6867	0.0000
-2.7481	0.0000
-2.8095	0.0000
-2.8709	0.0000
-2.9322	0.0000
-2.9936	0.0000
-3.0550	0.0000
-3.1164	0.0000
-3.1777	0.0000
-3.2391	0.0000
-Mx1	1
-250	150
-2	4	12
-0
--3.1709	0.1330
--3.0983	0.1643
--3.0258	0.2000
--2.9533	0.2398
--2.8808	0.2834
--2.8082	0.3299
--2.7357	0.3785
--2.6632	0.4278
--2.5907	0.4764
--2.5181	0.5228
--2.4456	0.5653
--2.3731	0.6022
--2.3006	0.6321
--2.2280	0.6538
--2.1555	0.6662
--2.0830	0.6690
--2.0105	0.6619
--1.9379	0.6452
--1.8654	0.6197
--1.7929	0.5865
--1.7204	0.5469
--1.6479	0.5024
--1.5753	0.4548
--1.5028	0.4057
--1.4303	0.3566
--1.3578	0.3088
--1.2852	0.2635
--1.2127	0.2215
--1.1402	0.1835
--1.0677	0.1497
--0.9951	0.1204
--0.9226	0.0954
--0.8501	0.0745
--0.7776	0.0573
--0.7050	0.0434
--0.6325	0.0324
--0.5600	0.0239
--0.4875	0.0173
--0.4149	0.0124
--0.3424	0.0087
--0.2699	0.0060
--0.1974	0.0041
--0.1248	0.0028
--0.0523	0.0018
-0.0202	0.0012
-0.0927	0.0008
-0.1653	0.0005
-0.2378	0.0003
-0.3103	0.0002
-0.3828	0.0001
-0.4554	0.0001
-0.5279	0.0000
-0.6004	0.0000
-0.6729	0.0000
-0.7455	0.0000
-0.8180	0.0000
-0.8905	0.0000
-0.9630	0.0000
-1.0356	0.0000
-1.1081	0.0000
-1.1806	0.0000
-1.2531	0.0000
-1.3257	0.0000
-1.3982	0.0000
-1.4707	0.0000
-1.5432	0.0000
-1.6158	0.0000
-1.6883	0.0000
-1.7608	0.0000
-1.8333	0.0000
-1.9059	0.0000
-1.9784	0.0000
-2.0509	0.0000
-2.1234	0.0000
-2.1959	0.0000
-2.2685	0.0000
-2.3410	0.0000
-2.4135	0.0000
-2.4860	0.0000
-2.5586	0.0000
-2.6311	0.0000
-2.7036	0.0000
-2.7761	0.0000
-2.8487	0.0000
-2.9212	0.0000
-2.9937	0.0000
-3.0662	0.0000
-3.1388	0.0000
-3.2113	0.0000
-3.2838	0.0000
-3.3563	0.0000
-3.4289	0.0000
-3.5014	0.0000
-3.5739	0.0000
-3.6464	0.0000
-3.7190	0.0000
-3.7915	0.0000
-3.8640	0.0000
-3.9365	0.0000
-4.0091	0.0000
-4.0816	0.0000
-Irf7	1
-250	150
-2	4	12
-0
--3.9154	0.0040
--3.8440	0.0068
--3.7726	0.0113
--3.7012	0.0181
--3.6298	0.0282
--3.5583	0.0429
--3.4869	0.0635
--3.4155	0.0916
--3.3441	0.1284
--3.2727	0.1753
--3.2013	0.2330
--3.1299	0.3015
--3.0585	0.3798
--2.9871	0.4657
--2.9157	0.5560
--2.8443	0.6461
--2.7729	0.7310
--2.7015	0.8051
--2.6301	0.8632
--2.5587	0.9010
--2.4873	0.9155
--2.4159	0.9056
--2.3445	0.8721
--2.2730	0.8175
--2.2016	0.7461
--2.1302	0.6628
--2.0588	0.5732
--1.9874	0.4827
--1.9160	0.3956
--1.8446	0.3157
--1.7732	0.2452
--1.7018	0.1854
--1.6304	0.1365
--1.5590	0.0978
--1.4876	0.0682
--1.4162	0.0463
--1.3448	0.0306
--1.2734	0.0197
--1.2020	0.0124
--1.1306	0.0075
--1.0592	0.0045
--0.9878	0.0026
--0.9163	0.0015
--0.8449	0.0008
--0.7735	0.0004
--0.7021	0.0002
--0.6307	0.0001
--0.5593	0.0001
--0.4879	0.0000
--0.4165	0.0000
--0.3451	0.0000
--0.2737	0.0000
--0.2023	0.0000
--0.1309	0.0000
--0.0595	0.0000
-0.0119	0.0000
-0.0833	0.0000
-0.1547	0.0000
-0.2261	0.0000
-0.2975	0.0000
-0.3690	0.0000
-0.4404	0.0000
-0.5118	0.0000
-0.5832	0.0000
-0.6546	0.0000
-0.7260	0.0000
-0.7974	0.0000
-0.8688	0.0000
-0.9402	0.0000
-1.0116	0.0000
-1.0830	0.0000
-1.1544	0.0000
-1.2258	0.0000
-1.2972	0.0000
-1.3686	0.0000
-1.4400	0.0000
-1.5114	0.0000
-1.5828	0.0000
-1.6543	0.0000
-1.7257	0.0000
-1.7971	0.0000
-1.8685	0.0000
-1.9399	0.0000
-2.0113	0.0000
-2.0827	0.0000
-2.1541	0.0000
-2.2255	0.0000
-2.2969	0.0000
-2.3683	0.0000
-2.4397	0.0000
-2.5111	0.0000
-2.5825	0.0000
-2.6539	0.0000
-2.7253	0.0000
-2.7967	0.0000
-2.8681	0.0000
-2.9396	0.0000
-3.0110	0.0000
-3.0824	0.0000
-3.1538	0.0000
-3.2252	0.0000
diff --git a/sourcecodes/data/example_chr2_spleen/cuLnlevels.txt b/sourcecodes/data/example_chr2_spleen/cuLnlevels.txt
deleted file mode 100644
index 605579c3..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLnlevels.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-rs3664317	1	2
-
diff --git a/sourcecodes/data/example_chr2_spleen/cuLnnode.txt b/sourcecodes/data/example_chr2_spleen/cuLnnode.txt
deleted file mode 100644
index 8351c193..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLnnode.txt
+++ /dev/null
@@ -1 +0,0 @@
-14
diff --git a/sourcecodes/data/example_chr2_spleen/cuLnrows.txt b/sourcecodes/data/example_chr2_spleen/cuLnrows.txt
deleted file mode 100644
index fff0a247..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLnrows.txt
+++ /dev/null
@@ -1 +0,0 @@
-74
diff --git a/sourcecodes/data/example_chr2_spleen/cuLparameters.txt b/sourcecodes/data/example_chr2_spleen/cuLparameters.txt
deleted file mode 100644
index 545d6e91..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLparameters.txt
+++ /dev/null
@@ -1,57 +0,0 @@
-rs3664317
-Discrete node with 2 states
-1	0.5479
-2	0.4521
-
-Oas1a
-Continuous node
-8.2815	0.3487
-
-Parp9
-Continuous node
-9.8042	0.2165
-
-Dhx58
-Continuous node
-8.8912	0.3029
-
-Cd1d1
-Continuous node
-9.6436	0.2679
-
-Irf7
-Continuous node
-10.0093	0.5542
-
-Oas3
-Continuous node
-8.9574	0.5062
-
-Pml
-Continuous node
-11.0754	0.1911
-
-Mx1
-Continuous node
-7.4831	0.3389
-
-Ifit1
-Continuous node
-8.8285	0.5736
-
-Trim25
-Continuous node
-10.2552	0.1765
-
-Oas1g
-Continuous node
-8.6322	0.4619
-
-Pglyrp3
-Continuous node
-6.0709	0.1286
-
-Ifih1
-Continuous node
-9.2981	0.3860
-
diff --git a/sourcecodes/data/example_chr2_spleen/cuLparent.txt b/sourcecodes/data/example_chr2_spleen/cuLparent.txt
deleted file mode 100644
index b8626c4c..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLparent.txt
+++ /dev/null
@@ -1 +0,0 @@
-4
diff --git a/sourcecodes/data/example_chr2_spleen/cuLstructure_old.txt b/sourcecodes/data/example_chr2_spleen/cuLstructure_old.txt
deleted file mode 100644
index f0815c7a..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLstructure_old.txt
+++ /dev/null
@@ -1,14 +0,0 @@
-rs3664317	0.5479	0.4521
-Dhx58	0.0024	0.0029	0.0035	0.0043	0.0053	0.0064	0.0076	0.0092	0.0110	0.0130	0.0154	0.0182	0.0213	0.0249	0.0290	0.0336	0.0388	0.0446	0.0510	0.0581	0.0659	0.0745	0.0838	0.0938	0.1046	0.1162	0.1284	0.1414	0.1550	0.1692	0.1839	0.1990	0.2145	0.2302	0.2459	0.2617	0.2772	0.2924	0.3071	0.3212	0.3346	0.3469	0.3582	0.3683	0.3771	0.3844	0.3902	0.3944	0.3970	0.3978	0.3970	0.3944	0.3902	0.3845	0.3771	0.3684	0.3583	0.3470	0.3346	0.3213	0.3072	0.2925	0.2773	0.2617	0.2460	0.2302	0.2146	0.1991	0.1840	0.1693	0.1551	0.1415	0.1285	0.1162	0.1047	0.0939	0.0838	0.0745	0.0660	0.0582	0.0510	0.0446	0.0388	0.0337	0.0290	0.0250	0.0213	0.0182	0.0154	0.0130	0.0110	0.0092	0.0077	0.0064	0.0053	0.0043	0.0035	0.0029	0.0024	0.0019	0.0015
-Cd1d1	0.0010	0.0012	0.0015	0.0019	0.0023	0.0029	0.0035	0.0043	0.0052	0.0064	0.0077	0.0092	0.0110	0.0131	0.0156	0.0184	0.0216	0.0253	0.0295	0.0342	0.0395	0.0455	0.0521	0.0594	0.0674	0.0762	0.0857	0.0960	0.1072	0.1190	0.1316	0.1449	0.1589	0.1734	0.1885	0.2039	0.2197	0.2357	0.2517	0.2677	0.2834	0.2987	0.3135	0.3276	0.3408	0.3530	0.3641	0.3739	0.3823	0.3891	0.3944	0.3980	0.3999	0.4000	0.3984	0.3951	0.3901	0.3835	0.3753	0.3658	0.3549	0.3428	0.3297	0.3158	0.3011	0.2858	0.2702	0.2543	0.2382	0.2223	0.2064	0.1909	0.1758	0.1612	0.1471	0.1337	0.1210	0.1090	0.0978	0.0873	0.0776	0.0687	0.0606	0.0532	0.0465	0.0404	0.0350	0.0302	0.0259	0.0222	0.0189	0.0160	0.0135	0.0113	0.0095	0.0079	0.0066	0.0054	0.0044	0.0036	0.0030
-Ifit1	0.0063	0.0075	0.0089	0.0105	0.0124	0.0145	0.0169	0.0197	0.0228	0.0264	0.0303	0.0347	0.0397	0.0451	0.0511	0.0577	0.0649	0.0728	0.0812	0.0904	0.1002	0.1106	0.1217	0.1333	0.1456	0.1584	0.1717	0.1854	0.1995	0.2138	0.2284	0.2430	0.2576	0.2720	0.2862	0.3001	0.3134	0.3261	0.3381	0.3492	0.3593	0.3684	0.3763	0.3830	0.3883	0.3922	0.3948	0.3958	0.3954	0.3936	0.3902	0.3855	0.3795	0.3721	0.3635	0.3539	0.3432	0.3316	0.3192	0.3061	0.2925	0.2784	0.2641	0.2495	0.2349	0.2203	0.2059	0.1917	0.1778	0.1643	0.1513	0.1388	0.1268	0.1155	0.1047	0.0947	0.0852	0.0765	0.0683	0.0609	0.0540	0.0477	0.0420	0.0369	0.0322	0.0281	0.0244	0.0211	0.0181	0.0156	0.0133	0.0113	0.0096	0.0081	0.0068	0.0057	0.0048	0.0040	0.0033	0.0027	0.0023
-Oas1g	0.0009	0.0011	0.0014	0.0018	0.0022	0.0028	0.0034	0.0042	0.0052	0.0063	0.0076	0.0092	0.0111	0.0133	0.0158	0.0187	0.0221	0.0260	0.0304	0.0353	0.0409	0.0472	0.0542	0.0619	0.0704	0.0797	0.0899	0.1008	0.1125	0.1251	0.1383	0.1523	0.1670	0.1822	0.1978	0.2138	0.2300	0.2464	0.2626	0.2787	0.2943	0.3094	0.3238	0.3373	0.3497	0.3609	0.3707	0.3791	0.3858	0.3909	0.3942	0.3956	0.3953	0.3931	0.3891	0.3834	0.3761	0.3672	0.3568	0.3451	0.3323	0.3184	0.3038	0.2884	0.2726	0.2565	0.2401	0.2238	0.2077	0.1918	0.1763	0.1613	0.1469	0.1332	0.1202	0.1080	0.0965	0.0859	0.0761	0.0671	0.0589	0.0514	0.0447	0.0387	0.0334	0.0286	0.0244	0.0208	0.0176	0.0148	0.0124	0.0103	0.0086	0.0071	0.0058	0.0048	0.0039	0.0032	0.0025	0.0020	0.0016
-Ifih1	0.0023	0.0028	0.0034	0.0041	0.0050	0.0060	0.0071	0.0085	0.0101	0.0119	0.0140	0.0164	0.0192	0.0223	0.0259	0.0299	0.0343	0.0393	0.0449	0.0510	0.0578	0.0652	0.0733	0.0820	0.0914	0.1015	0.1124	0.1238	0.1359	0.1487	0.1620	0.1758	0.1900	0.2046	0.2195	0.2345	0.2496	0.2647	0.2795	0.2941	0.3082	0.3218	0.3347	0.3467	0.3578	0.3678	0.3766	0.3842	0.3903	0.3951	0.3984	0.4001	0.4003	0.3990	0.3961	0.3917	0.3859	0.3787	0.3702	0.3605	0.3497	0.3379	0.3252	0.3118	0.2978	0.2834	0.2685	0.2535	0.2384	0.2234	0.2084	0.1938	0.1794	0.1655	0.1521	0.1392	0.1269	0.1153	0.1043	0.0940	0.0844	0.0755	0.0672	0.0597	0.0527	0.0464	0.0407	0.0356	0.0310	0.0269	0.0232	0.0200	0.0171	0.0146	0.0124	0.0105	0.0089	0.0075	0.0063	0.0052	0.0043
-Parp9	0.0080	0.0094	0.0111	0.0130	0.0152	0.0177	0.0205	0.0237	0.0272	0.0312	0.0357	0.0406	0.0461	0.0521	0.0587	0.0659	0.0737	0.0821	0.0912	0.1009	0.1112	0.1222	0.1337	0.1458	0.1585	0.1716	0.1851	0.1990	0.2132	0.2276	0.2420	0.2565	0.2709	0.2850	0.2988	0.3121	0.3249	0.3369	0.3482	0.3586	0.3679	0.3761	0.3832	0.3889	0.3934	0.3964	0.3981	0.3983	0.3971	0.3945	0.3905	0.3851	0.3785	0.3706	0.3617	0.3516	0.3406	0.3288	0.3163	0.3031	0.2894	0.2754	0.2611	0.2467	0.2322	0.2178	0.2035	0.1895	0.1759	0.1626	0.1498	0.1375	0.1258	0.1146	0.1041	0.0942	0.0849	0.0763	0.0683	0.0609	0.0541	0.0480	0.0423	0.0372	0.0326	0.0285	0.0247	0.0214	0.0185	0.0159	0.0137	0.0117	0.0099	0.0084	0.0071	0.0060	0.0050	0.0042	0.0035	0.0029	0.0024
-Oas1a	0.0034	0.0042	0.0051	0.0061	0.0073	0.0087	0.0104	0.0124	0.0146	0.0172	0.0201	0.0235	0.0273	0.0316	0.0364	0.0417	0.0477	0.0543	0.0616	0.0695	0.0782	0.0876	0.0977	0.1085	0.1201	0.1323	0.1452	0.1586	0.1727	0.1871	0.2020	0.2172	0.2325	0.2479	0.2633	0.2785	0.2933	0.3077	0.3214	0.3344	0.3465	0.3576	0.3675	0.3761	0.3834	0.3892	0.3935	0.3963	0.3974	0.3969	0.3947	0.3910	0.3857	0.3790	0.3708	0.3613	0.3507	0.3389	0.3263	0.3128	0.2986	0.2839	0.2689	0.2536	0.2382	0.2228	0.2075	0.1925	0.1779	0.1637	0.1500	0.1369	0.1245	0.1127	0.1016	0.0912	0.0816	0.0726	0.0644	0.0569	0.0501	0.0439	0.0383	0.0332	0.0288	0.0248	0.0213	0.0182	0.0155	0.0131	0.0111	0.0093	0.0078	0.0065	0.0054	0.0045	0.0037	0.0030	0.0025	0.0020	0.0016
-Irf7	0.0002	0.0003	0.0004	0.0005	0.0006	0.0008	0.0010	0.0013	0.0016	0.0021	0.0026	0.0033	0.0040	0.0050	0.0061	0.0075	0.0091	0.0111	0.0133	0.0160	0.0191	0.0226	0.0267	0.0314	0.0367	0.0428	0.0495	0.0570	0.0654	0.0746	0.0846	0.0956	0.1074	0.1201	0.1336	0.1478	0.1628	0.1784	0.1946	0.2111	0.2279	0.2448	0.2617	0.2783	0.2946	0.3102	0.3250	0.3388	0.3514	0.3627	0.3725	0.3806	0.3870	0.3916	0.3942	0.3948	0.3935	0.3903	0.3851	0.3781	0.3694	0.3591	0.3473	0.3343	0.3201	0.3050	0.2892	0.2728	0.2561	0.2392	0.2223	0.2056	0.1891	0.1732	0.1577	0.1430	0.1290	0.1157	0.1033	0.0918	0.0812	0.0714	0.0625	0.0544	0.0472	0.0407	0.0349	0.0298	0.0253	0.0214	0.0180	0.0151	0.0125	0.0104	0.0086	0.0070	0.0057	0.0047	0.0038	0.0030	0.0024
-Mx1	0.0028	0.0035	0.0043	0.0053	0.0066	0.0081	0.0098	0.0119	0.0144	0.0173	0.0207	0.0246	0.0291	0.0342	0.0400	0.0465	0.0539	0.0621	0.0711	0.0811	0.0919	0.1037	0.1164	0.1300	0.1444	0.1595	0.1754	0.1918	0.2086	0.2258	0.2431	0.2604	0.2775	0.2941	0.3102	0.3254	0.3396	0.3526	0.3641	0.3742	0.3824	0.3889	0.3934	0.3959	0.3964	0.3948	0.3911	0.3855	0.3780	0.3688	0.3579	0.3455	0.3318	0.3170	0.3013	0.2849	0.2680	0.2508	0.2335	0.2162	0.1992	0.1826	0.1665	0.1510	0.1363	0.1223	0.1092	0.0970	0.0858	0.0754	0.0660	0.0574	0.0497	0.0428	0.0367	0.0312	0.0265	0.0223	0.0187	0.0156	0.0130	0.0107	0.0088	0.0072	0.0059	0.0047	0.0038	0.0031	0.0024	0.0019	0.0015	0.0012	0.0009	0.0007	0.0006	0.0004	0.0003	0.0002	0.0002	0.0001	0.0001
-Trim25	0.0009	0.0012	0.0014	0.0018	0.0022	0.0026	0.0032	0.0039	0.0047	0.0056	0.0068	0.0081	0.0096	0.0113	0.0133	0.0156	0.0183	0.0213	0.0247	0.0286	0.0329	0.0377	0.0431	0.0490	0.0556	0.0628	0.0706	0.0791	0.0883	0.0982	0.1087	0.1200	0.1319	0.1444	0.1575	0.1711	0.1851	0.1996	0.2144	0.2293	0.2444	0.2594	0.2743	0.2889	0.3031	0.3168	0.3299	0.3422	0.3535	0.3638	0.3730	0.3809	0.3875	0.3927	0.3964	0.3987	0.3993	0.3985	0.3961	0.3922	0.3868	0.3801	0.3720	0.3627	0.3522	0.3408	0.3284	0.3153	0.3015	0.2872	0.2725	0.2576	0.2426	0.2275	0.2126	0.1979	0.1835	0.1695	0.1559	0.1429	0.1304	0.1186	0.1075	0.0970	0.0872	0.0781	0.0696	0.0619	0.0548	0.0483	0.0424	0.0371	0.0323	0.0281	0.0243	0.0209	0.0180	0.0153	0.0131	0.0111	0.0094
-Oas3	0.0017	0.0021	0.0026	0.0032	0.0039	0.0048	0.0059	0.0072	0.0087	0.0104	0.0125	0.0149	0.0177	0.0209	0.0246	0.0289	0.0337	0.0391	0.0452	0.0520	0.0595	0.0679	0.0771	0.0871	0.0980	0.1098	0.1224	0.1358	0.1501	0.1651	0.1808	0.1971	0.2139	0.2311	0.2486	0.2662	0.2837	0.3011	0.3181	0.3345	0.3502	0.3650	0.3787	0.3911	0.4021	0.4116	0.4195	0.4255	0.4297	0.4320	0.4324	0.4308	0.4273	0.4220	0.4148	0.4059	0.3954	0.3835	0.3702	0.3558	0.3405	0.3243	0.3075	0.2903	0.2728	0.2552	0.2377	0.2204	0.2034	0.1869	0.1709	0.1557	0.1411	0.1273	0.1144	0.1023	0.0911	0.0807	0.0712	0.0626	0.0547	0.0476	0.0413	0.0356	0.0306	0.0262	0.0223	0.0189	0.0159	0.0134	0.0112	0.0093	0.0077	0.0064	0.0052	0.0043	0.0035	0.0028	0.0023	0.0018	0.0015
-Pglyrp3	0.0011	0.0014	0.0017	0.0021	0.0026	0.0032	0.0039	0.0047	0.0057	0.0069	0.0083	0.0100	0.0119	0.0141	0.0166	0.0196	0.0229	0.0267	0.0310	0.0359	0.0413	0.0474	0.0541	0.0614	0.0695	0.0783	0.0878	0.0981	0.1091	0.1208	0.1332	0.1462	0.1598	0.1739	0.1885	0.2034	0.2185	0.2337	0.2490	0.2640	0.2788	0.2931	0.3069	0.3199	0.3320	0.3431	0.3530	0.3617	0.3690	0.3748	0.3790	0.3817	0.3827	0.3821	0.3798	0.3759	0.3705	0.3635	0.3552	0.3455	0.3347	0.3228	0.3100	0.2964	0.2822	0.2675	0.2525	0.2373	0.2220	0.2069	0.1919	0.1773	0.1631	0.1493	0.1362	0.1236	0.1118	0.1006	0.0902	0.0804	0.0715	0.0632	0.0557	0.0489	0.0427	0.0371	0.0321	0.0277	0.0238	0.0203	0.0173	0.0147	0.0124	0.0104	0.0087	0.0072	0.0060	0.0050	0.0041	0.0033	0.0027
-Pml	0.0001	0.0001	0.0002	0.0002	0.0003	0.0004	0.0005	0.0006	0.0008	0.0010	0.0013	0.0016	0.0020	0.0026	0.0032	0.0040	0.0049	0.0060	0.0073	0.0089	0.0107	0.0129	0.0154	0.0184	0.0218	0.0257	0.0302	0.0353	0.0411	0.0476	0.0548	0.0628	0.0716	0.0813	0.0918	0.1032	0.1155	0.1285	0.1424	0.1570	0.1722	0.1880	0.2043	0.2209	0.2377	0.2546	0.2713	0.2877	0.3036	0.3188	0.3332	0.3466	0.3587	0.3695	0.3787	0.3863	0.3922	0.3962	0.3983	0.3985	0.3967	0.3930	0.3875	0.3802	0.3713	0.3608	0.3489	0.3357	0.3215	0.3064	0.2906	0.2743	0.2576	0.2408	0.2240	0.2073	0.1910	0.1751	0.1597	0.1450	0.1310	0.1178	0.1054	0.0938	0.0831	0.0733	0.0643	0.0562	0.0488	0.0422	0.0363	0.0311	0.0265	0.0225	0.0190	0.0159	0.0133	0.0111	0.0092	0.0076	0.0062
diff --git a/sourcecodes/data/example_chr2_spleen/cuLthr.txt b/sourcecodes/data/example_chr2_spleen/cuLthr.txt
deleted file mode 100644
index b63ba696..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLthr.txt
+++ /dev/null
@@ -1 +0,0 @@
-0.9
diff --git a/sourcecodes/data/example_chr2_spleen/cuLtier.txt b/sourcecodes/data/example_chr2_spleen/cuLtier.txt
deleted file mode 100644
index e71cfdda..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLtier.txt
+++ /dev/null
@@ -1 +0,0 @@
-3,Tier1,1,rs3664317,Tier2,1,Ifih1,Tier3,12,Oas1a,Parp9,Dhx58,Cd1d1,Irf7,Oas3,Pml,Mx1,Ifit1,Trim25,Oas1g,Pglyrp3,
\ No newline at end of file
diff --git a/sourcecodes/data/example_chr2_spleen/cuLtype.txt b/sourcecodes/data/example_chr2_spleen/cuLtype.txt
deleted file mode 100644
index 1b707710..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLtype.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-rs3664317	Oas1a	Parp9	Dhx58	Cd1d1	Irf7	Oas3	Pml	Mx1	Ifit1	Trim25	Oas1g	Pglyrp3	Ifih1
-2	1	1	1	1	1	1	1	1	1	1	1	1	1	
diff --git a/sourcecodes/data/example_chr2_spleen/cuLwhite.txt b/sourcecodes/data/example_chr2_spleen/cuLwhite.txt
deleted file mode 100644
index 83e81b8b..00000000
--- a/sourcecodes/data/example_chr2_spleen/cuLwhite.txt
+++ /dev/null
@@ -1 +0,0 @@
-From	To
diff --git a/sourcecodes/data/example_chr2_spleen/old/cuLrun_evidencemodified.sh b/sourcecodes/data/example_chr2_spleen/old/cuLrun_evidencemodified.sh
deleted file mode 100644
index 5a228612..00000000
--- a/sourcecodes/data/example_chr2_spleen/old/cuLrun_evidencemodified.sh
+++ /dev/null
@@ -1,38 +0,0 @@
-#!/bin/sh
-# script for execution of deployed applications
-#
-# Sets up the MCR environment for the current $ARCH and executes 
-# the specified command.
-#
-exe_name=$0
-exe_dir=`dirname "$0"`
-echo "------------------------------------------"
-if [ "x$1" = "x" ]; then
-  echo Usage:
-  echo    $0 \<deployedMCRroot\> args
-else
-  echo Setting up environment variables
-  MCRROOT="$1"
-  echo ---
-  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
-  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
-  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
-	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
-  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
-  export LD_LIBRARY_PATH;
-  export XAPPLRESDIR;
-  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
-  shift 1
-  args=
-  while [ $# -gt 0 ]; do
-      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
-      args="${args} ${token}" 
-      shift
-  done
-  "${exe_dir}"/evidencemodified cuL
-fi
-exit
diff --git a/sourcecodes/data/example_chr2_spleen/old/cuLrun_initialstructure.sh b/sourcecodes/data/example_chr2_spleen/old/cuLrun_initialstructure.sh
deleted file mode 100644
index 1d0835a4..00000000
--- a/sourcecodes/data/example_chr2_spleen/old/cuLrun_initialstructure.sh
+++ /dev/null
@@ -1,38 +0,0 @@
-#!/bin/sh
-# script for execution of deployed applications
-#
-# Sets up the MCR environment for the current $ARCH and executes 
-# the specified command.
-#
-exe_name=$0
-exe_dir=`dirname "$0"`
-echo "------------------------------------------"
-if [ "x$1" = "x" ]; then
-  echo Usage:
-  echo    $0 \<deployedMCRroot\> args
-else
-  echo Setting up environment variables
-  MCRROOT="$1"
-  echo ---
-  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
-  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
-  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
-	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
-  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
-  export LD_LIBRARY_PATH;
-  export XAPPLRESDIR;
-  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
-  shift 1
-  args=
-  while [ $# -gt 0 ]; do
-      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
-      args="${args} ${token}" 
-      shift
-  done
-  "${exe_dir}"/initialstructure cuL
-fi
-exit