Resolved merge conflict

20 files changed, 0 insertions, 1171 deletions

diff --git a/sourcecodes/data/example1/Bqxban.txt b/sourcecodes/data/example1/Bqxban.txt
deleted file mode 100644
index 83e81b8b..00000000
--- a/sourcecodes/data/example1/Bqxban.txt
+++ /dev/null
@@ -1 +0,0 @@
-From	To
diff --git a/sourcecodes/data/example1/Bqxcontinuous_input.txt b/sourcecodes/data/example1/Bqxcontinuous_input.txt
deleted file mode 100644
index 5e296c45..00000000
--- a/sourcecodes/data/example1/Bqxcontinuous_input.txt
+++ /dev/null
@@ -1,203 +0,0 @@
-Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6
-2	2	1	1	1	1	1	1
-2	2	0.46259	1.2692	-1.3164	-0.44096	0.5929	-0.75422
-1	1	-0.10011	-0.88834	1.6407	0.99972	0.31288	0.65602
-1	1	-1.0533	-0.55296	1.2715	1.3686	-0.19153	0.37361
-1	2	0.042371	0.13573	-0.72659	-0.66133	0.43157	-1.6715
-1	2	-0.68686	-1.6152	-0.95019	-1.2239	0.12319	-0.79155
-1	1	-0.4558	0.090877	0.94224	1.2354	-0.36356	0.34937
-1	1	0.237	-0.49002	1.8939	1.4399	0.033059	1.3229
-1	2	0.070265	0.22547	-1.4903	-0.069341	-0.16148	-0.01449
-1	1	-0.69146	-0.43461	1.1501	0.21205	-0.18087	0.32746
-1	1	0.31535	-0.9858	0.57816	0.35924	0.12866	1.0553
-2	1	1.2718	0.39314	0.6669	0.90002	-0.30206	1.3376
-1	1	1.1871	-0.45611	0.87227	0.31014	-0.092846	0.81278
-2	1	-1.0168	-0.44286	1.6933	0.72968	0.038808	0.81906
-2	2	-0.25313	0.52468	0.02823	-0.20984	-0.075809	-1.3591
-1	2	-0.58108	-0.3967	-0.11925	-0.61288	0.46778	0.090941
-1	2	-0.88043	-0.28187	-1.1645	-1.2543	-0.28951	-1.039
-1	2	0.54121	0.24395	-1.0043	-1.4483	-0.19839	-2.5407
-2	1	0.47375	1.1319	0.68553	1.035	0.44043	1.3011
-2	1	0.57785	0.69093	1.5941	1.6735	0.19981	0.50708
-1	2	-0.43989	0.0024131	-1.5405	-1.2304	-0.15382	-1.1058
-2	1	0.38035	-0.063535	1.1606	1.3124	-0.38043	0.6277
-1	2	0.70114	-0.41044	-0.39767	-1.5424	0.27477	-0.76183
-1	1	-0.9406	-0.20526	1.3302	1.097	0.16006	1.2988
-1	2	0.52122	0.064793	-0.031492	0.21696	-0.41979	-0.79123
-1	2	-0.53387	-0.71043	-0.52344	-1.5584	-0.09538	-1.5781
-1	1	0.49563	-0.58126	0.7747	1.274	0.19196	0.10624
-2	2	1.1499	1.879	0.43595	0.73474	0.045381	-0.88645
-1	2	0.40705	-0.37647	-0.19815	-1.5366	0.37167	-0.10553
-2	2	0.62526	0.043371	-0.64449	-0.44076	-0.4318	-0.91807
-1	1	-0.61788	-0.62414	0.3169	0.85091	-0.10135	0.79065
-1	1	0.18491	-1.5226	1.1149	0.75046	0.25948	0.42431
-2	2	0.86063	0.92883	-1.1584	-0.099858	-0.55095	-0.064129
-1	2	-0.28946	0.0057533	-0.95703	-0.44018	0.084268	-0.23718
-1	1	-0.073096	0.16452	1.4444	1.1452	0.46025	0.30452
-1	1	0.15637	-0.73137	0.585	-0.046911	0.43881	1.2888
-1	2	0.081142	-0.63691	-0.14883	0.66593	-0.13479	-0.22207
-1	1	0.10876	-0.23383	1.8314	1.3282	0.4362	0.90139
-1	2	-1.0582	-0.97152	-0.57118	-1.2617	0.17115	-0.060679
-2	2	-0.47421	-0.56819	-0.38775	0.035215	0.51982	-1.6309
-2	2	-0.10242	0.8127	0.41773	-1.1308	-0.30719	-0.80758
-1	1	-0.083462	-0.4565	1.1556	0.3299	0.087362	0.31349
-1	2	-0.98158	0.01727	-1.3281	-1.4474	0.54555	-0.10096
-1	1	-0.80604	-0.19415	1.4986	1.3386	-0.16367	0.68271
-1	1	0.80082	-0.57853	1.0716	0.94015	-0.54114	0.032172
-2	2	2.0456	0.97954	-0.45536	-0.14332	-0.25819	-1.0833
-1	1	-0.30148	0.20623	0.64194	0.76414	-0.59067	0.64326
-1	1	-0.55625	-0.26957	1.8447	1.6568	-0.38077	0.58831
-1	2	0.11898	0.80706	-0.025844	-0.57984	-0.23395	-1.1554
-1	2	-0.095497	-1.0637	-0.92583	-0.57928	0.23695	-0.42992
-2	2	0.066154	0.73037	-0.73622	-0.57047	0.39169	0.40928
-1	1	0.81522	0.11381	0.68971	0.29219	0.037792	0.81502
-1	1	-0.65356	-0.20182	0.92089	0.92298	-0.5417	0.49215
-1	1	-0.90826	-0.10979	1.3847	0.75954	-0.20255	0.32975
-1	2	-0.25671	-1.1903	-1.4241	-1.6058	-0.062549	-1.3981
-2	2	-1.8038	-1.4801	-0.94121	-1.6244	0.4817	-0.0029469
-1	2	0.12651	0.028719	-1.5818	-1.0266	0.19779	-0.36357
-1	1	-1.0658	-0.58443	0.68956	0.35467	0.11177	1.5243
-1	2	0.14729	-0.15111	-0.027639	-0.2899	0.11533	-0.60305
-2	2	-0.76889	0.87161	-0.83556	-1.1777	-0.21878	-0.98527
-2	2	0.12252	0.49068	-0.2557	-1.5816	0.25332	-0.78715
-1	1	-0.40287	0.26456	0.62208	0.60909	0.36074	0.092703
-2	1	-0.78301	1.4641	1.3162	1.9448	-0.10841	0.9618
-1	2	-0.25018	-0.32797	-1.113	-1.6123	0.6272	-1.2718
-2	1	0.15804	-0.18147	2.4571	0.59504	-0.34056	0.8691
-2	1	-0.582	0.25738	1.4075	0.92251	-0.40889	0.66381
-1	1	-0.26827	0.58632	0.51883	1.5745	-0.13818	1.0526
-1	2	0.13453	0.18218	-0.51676	-0.54166	-0.36636	-1.206
-2	1	1.1502	0.36164	1.9983	1.0809	0.11272	0.67683
-1	2	0.27812	0.46559	-1.6109	-0.91039	0.3803	-0.71802
-2	1	0.15292	0.61921	0.71009	1.3063	-0.35819	0.8661
-1	2	0.19902	0.48986	-1.4026	-0.8495	0.47158	0.0622
-2	1	0.4838	1.1096	1.4392	1.1438	0.34739	0.084004
-1	1	-0.63609	-0.35105	0.63581	1.1939	-0.062938	0.91353
-1	2	0.64203	-0.5095	-1.7792	-0.88803	0.43482	-0.66314
-1	1	-0.18434	-0.48157	0.69942	0.56942	-0.019967	0.50506
-1	1	0.10168	-1.0928	1.2144	0.28313	0.22159	0.54058
-1	1	-0.18578	-0.45336	1.5468	0.99679	0.11821	1.0476
-1	2	-0.60607	-1.1275	-0.90963	-0.69014	-0.33163	-1.2734
-1	1	-0.35353	-0.42708	0.78989	0.14094	-0.056632	0.80598
-1	1	-0.020221	-1.1235	1.9782	-0.041281	0.19857	1.2488
-1	1	1.2346	-0.37121	1.3325	1.1237	-0.027458	1.0044
-2	2	-0.54489	1.6812	-0.59836	-0.012441	0.41243	-0.58835
-2	1	-0.029577	2.1707	1.3285	1.2109	0.29684	0.90646
-2	2	0.70774	1.0606	-1.3996	-0.020914	-0.60955	-1.2187
-2	1	0.07926	0.52862	1.3994	0.54549	0.55303	0.16155
-1	1	0.041856	-0.92023	0.87269	-0.66601	-0.15945	0.1004
-1	2	0.17665	0.31945	-1.7756	-0.60442	0.020525	-1.0625
-1	1	-0.090238	-0.65111	0.56993	-0.4117	-0.19486	-0.18849
-1	2	0.059166	-0.47194	-0.69068	-0.41022	0.25867	-0.057175
-1	2	0.10473	0.66887	0.082035	-0.55975	-0.28439	-1.468
-1	1	-0.20937	-0.36621	0.09609	0.28164	0.24673	-0.11107
-1	2	-1.2678	0.22369	-0.42201	-0.70103	0.075915	-1.3347
-1	2	-0.35467	0.11166	-0.42144	-0.095223	-0.29936	-0.68322
-2	2	0.84875	1.24	-0.81217	0.084034	-0.32224	-1.6241
-2	1	-0.45939	1.3208	0.97993	1.2991	-0.015791	1.487
-1	2	-0.42254	-0.57928	-0.58529	-2.2375	0.51999	-0.79909
-2	1	0.32092	-0.13796	0.67098	0.24639	-0.36066	-0.032948
-1	2	-1.2408	-0.94836	0.026276	-0.37981	-0.02237	-0.38777
-2	2	0.20959	2.1466	-1.7027	-1.3169	-0.16515	-1.046
-2	2	-0.10482	1.3773	-1.2998	-0.014223	0.34065	-0.35362
-1	2	-0.66188	-1.2477	-0.62084	0.27682	0.1674	-0.8918
-1	1	-0.97246	-0.73017	1.3843	1.5549	0.1067	0.85754
-1	1	0.74567	-0.032694	1.1153	0.97318	-0.0033905	0.85059
-2	2	0.29324	-0.090608	-0.4945	-1.0484	-0.14987	-1.0141
-2	1	-0.86818	0.44948	1.8531	0.51896	-0.021141	1.8486
-1	2	0.362	-0.29749	-0.66525	0.21709	-0.15594	-1.4087
-1	2	-0.17675	0.36465	-0.45423	-1.262	0.22968	-1.246
-1	2	-0.34633	-0.16067	-1.2216	-1.3019	-0.040891	-1.2935
-1	2	0.44608	-0.57732	0.25606	-1.1664	0.54705	-0.19859
-1	2	0.45398	-0.55214	-0.33433	-0.085418	-0.10094	-0.48509
-1	2	0.12407	0.022419	-1.0312	-0.47727	0.20924	-1.2961
-1	1	-0.76644	-1.1794	1.2345	0.84756	0.1532	0.77648
-1	2	-0.10329	-0.53768	-0.67677	-0.58708	-0.014634	-0.036347
-1	1	0.2378	0.15372	0.49652	0.29193	0.19047	1.152
-1	2	0.024605	-0.38937	-0.89907	-0.42106	0.16921	-0.80893
-1	2	0.28812	0.26265	-0.94234	-0.88527	-0.49803	0.48254
-1	1	0.85086	0.11783	1.5014	1.2382	0.24441	1.3649
-2	2	0.86172	0.14894	-0.4846	-1.3488	-0.41844	-1.1372
-1	2	0.67971	-0.27488	-0.50687	-0.79153	-0.093399	-1.391
-1	1	-0.91977	-0.66099	0.5801	0.46587	-0.2263	1.43
-1	2	0.88213	-0.48674	-0.42406	-1.2762	0.28981	-1.0813
-2	1	-0.36583	0.51518	1.4491	1.4995	-0.073755	1.1218
-1	1	-0.54006	-0.59443	0.81263	0.65809	-0.15621	1.2508
-2	2	1.2125	-0.012648	-0.92657	-0.81972	-0.1536	-1.0176
-1	2	0.42493	0.34558	-1.7672	-1.3503	-0.045928	0.37449
-1	1	0.17097	-0.86593	-0.13424	1.0257	0.058014	0.91044
-2	1	-1.393	0.5338	1.8514	2.291	0.15305	0.30028
-1	1	-0.58552	-1.5337	1.5133	0.9976	0.64638	1.4428
-1	2	0.046272	-0.56387	-0.86063	-1.0462	0.014457	-1.3038
-1	2	0.34933	-0.16796	-0.27854	-0.27327	-0.0040928	-0.17912
-1	1	-1.0672	0.3979	1.208	0.50111	-0.013978	0.015097
-1	2	0.31052	-0.46723	-1.1237	0.59267	0.30978	-1.0169
-1	2	-0.55337	-0.42776	-0.12612	-0.41838	-0.56558	-0.58189
-2	2	0.3925	0.15644	-0.72963	-0.66601	-0.10837	-0.27787
-1	2	-0.48513	-1.4119	-0.16889	-0.19646	-0.068098	-0.084247
-2	2	0.16692	1.5447	-1.3064	-1.3338	-0.25668	-0.48832
-1	2	-0.36092	0.31518	-0.44815	-1.4019	-0.47505	-0.37187
-1	1	-1.8192	-0.57745	1.1304	0.262	-0.3595	0.58577
-1	1	-0.065383	0.07156	1.4931	2.3215	0.85149	1.4585
-2	1	-1.119	0.70896	1.0498	0.74334	0.75838	1.6107
-2	2	-0.17682	-0.21029	-0.74465	-0.83806	0.10827	-1.2829
-1	2	0.69834	-0.082402	0.64008	-0.83119	-0.26766	0.36961
-2	2	-0.28266	1.1929	-0.15174	0.098554	-0.33989	-0.6376
-2	2	1.5369	1.8434	0.0030761	-0.59703	0.14497	-1.5165
-1	2	0.35023	-0.28475	-0.93594	-1.0937	-0.46614	-2.188
-2	1	0.62308	1.0873	-0.0037182	0.86847	-0.48699	-0.10105
-1	1	-1.0408	-0.99866	2.0799	1.1634	0.092516	0.30401
-1	1	-0.87125	-0.88987	1.0278	1.0157	-0.23725	1.2377
-1	2	-0.020591	-0.03398	-0.024834	-1.3588	-0.045961	-0.89693
-1	1	0.9213	-0.57037	1.044	1.2994	0.046517	0.66563
-1	2	-0.87288	-0.96382	-0.704	-1.2184	0.046903	-0.30008
-1	2	0.77586	-0.34168	-0.09867	-0.37744	-0.24309	-0.13441
-2	1	0.19521	0.67595	1.4533	1.5115	0.19553	0.79596
-2	1	-1.3273	1.0891	1.2544	0.98928	0.045725	0.54963
-2	2	0.59176	0.65915	-0.84578	-0.080229	-0.26961	0.24045
-1	2	-0.66958	-1.042	-1.2138	-0.7612	-0.22775	-0.40062
-1	2	1.1154	-0.57069	-0.6592	-2.1961	-0.013175	0.46007
-1	2	-0.5254	0.0031225	-0.77758	0.8169	0.13224	-0.65572
-2	1	0.24551	1.5078	0.10719	1.1454	0.70578	0.59051
-1	2	0.29875	-0.11455	-1.0497	-0.77881	0.080708	-0.48337
-1	1	-0.1047	0.011628	1.2504	0.41776	-0.20102	1.2252
-1	2	0.44808	-0.8165	-0.080134	-0.49618	0.051011	-0.71722
-2	1	2.0365	1.5592	1.3257	1.2472	-0.47899	0.10943
-1	1	-0.16507	-0.66011	0.98739	0.58519	0.245	-0.43277
-1	2	-0.028366	-0.16961	-1.3266	0.14248	-0.24634	-1.1154
-2	1	0.92842	1.8842	1.3169	1.0358	-0.20988	0.88021
-2	2	0.33158	0.32463	-0.50924	0.40233	0.54391	-0.24309
-1	2	1.2555	0.1928	-0.487	0.048779	-0.23483	-1.477
-2	1	0.75021	0.85943	-0.2323	0.10748	-0.68906	0.84276
-2	2	0.6297	1.7397	-1.6136	-0.43268	-0.21442	-0.77462
-2	1	0.53168	1.0807	1.0853	0.62304	0.44036	0.48087
-1	2	-0.31256	-0.69771	-0.88556	-1.333	0.038614	-1.5744
-1	2	-0.039695	-0.52447	0.91401	-0.93272	0.53434	-0.080746
-2	1	-0.16596	0.56821	0.76008	0.45442	0.10286	0.6539
-1	2	-0.4331	-0.89669	-1.3097	-1.2157	0.1065	-0.8512
-1	2	-0.34708	-0.51457	-1.012	-0.39437	-0.55374	-1.144
-2	2	0.024082	0.7128	-1.3702	-1.4492	-0.10228	-0.59071
-1	2	-0.0037109	-0.68845	-0.649	-0.91581	0.066805	-0.98583
-2	1	0.68706	0.067424	0.87139	0.7938	-0.099645	1.529
-2	2	-0.31183	0.57814	-0.80815	-0.66724	-0.31919	-0.61319
-1	2	-0.11153	-0.6246	-0.27979	-0.18363	0.83639	0.014919
-2	2	0.20406	1.5838	-0.96334	-1.1228	-0.17808	-1.2123
-2	2	-0.1134	0.63358	-0.53321	-0.84276	-0.27657	-0.36992
-1	2	0.25517	0.67006	-0.1349	0.18275	0.40982	-0.62487
-1	1	-1.2684	0.31042	0.91155	0.66143	0.2483	-0.12434
-1	1	-0.97542	-0.85419	0.7663	0.16362	-0.18737	0.67266
-1	2	-0.043882	-0.62746	-0.82816	-0.40626	-0.051048	-0.61297
-1	1	0.59605	-0.45852	1.2962	0.78156	-0.48154	0.17778
-2	2	-0.06266	1.1144	-0.80524	-0.3189	-0.16038	-0.96372
-1	2	-1.1821	1.0798	-1.3407	-0.52643	0.12458	-0.7871
-2	2	0.59446	0.89186	-0.97856	-0.64658	0.2712	-1.5538
-1	2	0.15067	0.41827	-1.0487	-1.0551	0.19143	-1.4537
-1	2	-1.073	0.022587	-1.7088	-1.3777	0.1964	-0.84025
-2	1	0.20928	1.8026	1.2073	2.78	0.15131	0.3448
-1	2	-1.1317	-0.6359	-0.70457	-1.676	-0.22886	-0.58769
-1	1	-0.039428	-0.58746	0.56	0.7896	-0.052581	0.99511
-1	2	0.55023	-0.20403	0.138	-0.70518	0.66927	-0.28861
-2	2	0.57423	1.1886	0.092876	0.025677	-0.41099	-1.2858
-2	2	-0.14179	1.5827	-0.94328	0.7703	-0.43967	-0.50448
-2	2	0.14666	1.0492	-0.0030259	-0.62418	-0.087515	-0.048386
-
diff --git a/sourcecodes/data/example1/Bqxgraphviz.txt b/sourcecodes/data/example1/Bqxgraphviz.txt
deleted file mode 100644
index 498a5fd8..00000000
--- a/sourcecodes/data/example1/Bqxgraphviz.txt
+++ /dev/null
@@ -1,12 +0,0 @@
-digraph G {
-size="10,10";  ratio = fill;
-node [shape=square,width=1.5];
-Geno1 -> Trait2;
-Geno2 -> Trait3;
-Geno2 -> Trait4;
-Geno2 -> Trait6;
-Trait2 -> Trait1;
-Trait2 -> Trait4;
-Trait3 -> Trait4;
-Trait6 -> Trait3;
-}
\ No newline at end of file
diff --git a/sourcecodes/data/example1/Bqxk.txt b/sourcecodes/data/example1/Bqxk.txt
deleted file mode 100644
index d00491fd..00000000
--- a/sourcecodes/data/example1/Bqxk.txt
+++ /dev/null
@@ -1 +0,0 @@
-1
diff --git a/sourcecodes/data/example1/Bqxmap.txt b/sourcecodes/data/example1/Bqxmap.txt
deleted file mode 100644
index dc9ba9be..00000000
--- a/sourcecodes/data/example1/Bqxmap.txt
+++ /dev/null
@@ -1,8 +0,0 @@
-Geno1	0.473175	1.335000
-Geno2	0.496318	1.570000
-Trait1	0.668009	-0.023903
-Trait2	0.796873	0.038552
-Trait3	1.036694	0.068708
-Trait4	0.984008	-0.010125
-Trait5	0.316471	0.008911
-Trait6	0.904542	-0.114267
diff --git a/sourcecodes/data/example1/Bqxmapdata.txt b/sourcecodes/data/example1/Bqxmapdata.txt
deleted file mode 100644
index 42b2fd9c..00000000
--- a/sourcecodes/data/example1/Bqxmapdata.txt
+++ /dev/null
@@ -1 +0,0 @@
-Trait5	Geno2	Trait6	Trait3	Geno1	Trait2	Trait4	Trait1
diff --git a/sourcecodes/data/example1/Bqxname.txt b/sourcecodes/data/example1/Bqxname.txt
deleted file mode 100644
index 8f42b468..00000000
--- a/sourcecodes/data/example1/Bqxname.txt
+++ /dev/null
@@ -1 +0,0 @@
-Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6
diff --git a/sourcecodes/data/example1/Bqxnet_figure.txt b/sourcecodes/data/example1/Bqxnet_figure.txt
deleted file mode 100644
index 11113895..00000000
--- a/sourcecodes/data/example1/Bqxnet_figure.txt
+++ /dev/null
@@ -1,652 +0,0 @@
-8
-1200	1200	
-Trait5	0	0
-Geno2	300	0
-Trait6	220	240
-Trait3	100	480
-Geno1	600	0
-Trait2	620	240
-Trait4	420	720
-Trait1	500	480
-Trait5	1
-250	150
-0
-0
--3.2055	0.0025
--3.1368	0.0030
--3.0681	0.0038
--2.9994	0.0046
--2.9308	0.0057
--2.8621	0.0069
--2.7934	0.0083
--2.7247	0.0101
--2.6561	0.0121
--2.5874	0.0144
--2.5187	0.0172
--2.4500	0.0203
--2.3813	0.0240
--2.3127	0.0281
--2.2440	0.0328
--2.1753	0.0381
--2.1066	0.0441
--2.0379	0.0508
--1.9693	0.0582
--1.9006	0.0664
--1.8319	0.0754
--1.7632	0.0852
--1.6945	0.0958
--1.6259	0.1073
--1.5572	0.1195
--1.4885	0.1326
--1.4198	0.1463
--1.3511	0.1608
--1.2825	0.1758
--1.2138	0.1914
--1.1451	0.2074
--1.0764	0.2237
--1.0078	0.2401
--0.9391	0.2565
--0.8704	0.2728
--0.8017	0.2888
--0.7330	0.3042
--0.6644	0.3190
--0.5957	0.3330
--0.5270	0.3460
--0.4583	0.3578
--0.3896	0.3682
--0.3210	0.3772
--0.2523	0.3846
--0.1836	0.3904
--0.1149	0.3944
--0.0462	0.3965
-0.0224	0.3969
-0.0911	0.3953
-0.1598	0.3920
-0.2285	0.3868
-0.2971	0.3800
-0.3658	0.3715
-0.4345	0.3615
-0.5032	0.3502
-0.5719	0.3376
-0.6405	0.3240
-0.7092	0.3095
-0.7779	0.2942
-0.8466	0.2784
-0.9153	0.2622
-0.9839	0.2458
-1.0526	0.2294
-1.1213	0.2130
-1.1900	0.1969
-1.2587	0.1812
-1.3273	0.1659
-1.3960	0.1513
-1.4647	0.1373
-1.5334	0.1240
-1.6021	0.1114
-1.6707	0.0997
-1.7394	0.0888
-1.8081	0.0787
-1.8768	0.0694
-1.9454	0.0610
-2.0141	0.0533
-2.0828	0.0464
-2.1515	0.0401
-2.2202	0.0346
-2.2888	0.0297
-2.3575	0.0253
-2.4262	0.0215
-2.4949	0.0182
-2.5636	0.0153
-2.6322	0.0129
-2.7009	0.0107
-2.7696	0.0089
-2.8383	0.0074
-2.9070	0.0061
-2.9756	0.0050
-3.0443	0.0040
-3.1130	0.0033
-3.1817	0.0026
-3.2503	0.0021
-3.3190	0.0017
-3.3877	0.0014
-3.4564	0.0011
-3.5251	0.0008
-3.5937	0.0007
-3.6624	0.0005
-Geno2	2
-250	150
-0
-3	3	4	7
-1	0.4300
-2	0.5700
-Trait6	1
-250	150
-1	2
-1	4
--3.6825	0.0005
--3.6140	0.0006
--3.5455	0.0008
--3.4769	0.0010
--3.4084	0.0013
--3.3399	0.0016
--3.2713	0.0020
--3.2028	0.0025
--3.1343	0.0031
--3.0658	0.0038
--2.9972	0.0046
--2.9287	0.0057
--2.8602	0.0069
--2.7917	0.0084
--2.7231	0.0101
--2.6546	0.0121
--2.5861	0.0145
--2.5176	0.0172
--2.4490	0.0204
--2.3805	0.0240
--2.3120	0.0282
--2.2435	0.0329
--2.1749	0.0382
--2.1064	0.0441
--2.0379	0.0508
--1.9694	0.0582
--1.9008	0.0664
--1.8323	0.0753
--1.7638	0.0851
--1.6953	0.0957
--1.6267	0.1071
--1.5582	0.1193
--1.4897	0.1323
--1.4212	0.1461
--1.3526	0.1605
--1.2841	0.1755
--1.2156	0.1910
--1.1471	0.2069
--1.0785	0.2232
--1.0100	0.2396
--0.9415	0.2560
--0.8730	0.2722
--0.8044	0.2881
--0.7359	0.3036
--0.6674	0.3184
--0.5989	0.3324
--0.5303	0.3454
--0.4618	0.3572
--0.3933	0.3677
--0.3248	0.3768
--0.2562	0.3843
--0.1877	0.3901
--0.1192	0.3942
--0.0507	0.3965
-0.0179	0.3969
-0.0864	0.3955
-0.1549	0.3923
-0.2234	0.3873
-0.2920	0.3806
-0.3605	0.3722
-0.4290	0.3624
-0.4975	0.3512
-0.5661	0.3387
-0.6346	0.3252
-0.7031	0.3108
-0.7716	0.2956
-0.8402	0.2799
-0.9087	0.2638
-0.9772	0.2474
-1.0457	0.2310
-1.1143	0.2147
-1.1828	0.1986
-1.2513	0.1829
-1.3198	0.1676
-1.3884	0.1529
-1.4569	0.1388
-1.5254	0.1255
-1.5939	0.1129
-1.6625	0.1011
-1.7310	0.0901
-1.7995	0.0799
-1.8680	0.0706
-1.9366	0.0620
-2.0051	0.0542
-2.0736	0.0472
-2.1421	0.0409
-2.2107	0.0353
-2.2792	0.0303
-2.3477	0.0259
-2.4162	0.0221
-2.4848	0.0187
-2.5533	0.0157
-2.6218	0.0132
-2.6903	0.0110
-2.7589	0.0092
-2.8274	0.0076
-2.8959	0.0062
-2.9644	0.0051
-3.0330	0.0042
-3.1015	0.0034
-3.1700	0.0027
-Trait3	1
-250	150
-2	2	3
-1	7
--2.7825	0.0086
--2.7216	0.0101
--2.6608	0.0119
--2.5999	0.0140
--2.5390	0.0163
--2.4782	0.0190
--2.4173	0.0220
--2.3565	0.0254
--2.2956	0.0292
--2.2347	0.0335
--2.1739	0.0383
--2.1130	0.0435
--2.0521	0.0494
--1.9913	0.0558
--1.9304	0.0628
--1.8695	0.0704
--1.8087	0.0786
--1.7478	0.0875
--1.6870	0.0970
--1.6261	0.1072
--1.5652	0.1181
--1.5044	0.1295
--1.4435	0.1415
--1.3826	0.1541
--1.3218	0.1672
--1.2609	0.1807
--1.2000	0.1946
--1.1392	0.2088
--1.0783	0.2232
--1.0175	0.2378
--0.9566	0.2524
--0.8957	0.2668
--0.8349	0.2811
--0.7740	0.2951
--0.7131	0.3086
--0.6523	0.3216
--0.5914	0.3338
--0.5305	0.3453
--0.4697	0.3559
--0.4088	0.3654
--0.3480	0.3738
--0.2871	0.3811
--0.2262	0.3870
--0.1654	0.3916
--0.1045	0.3948
--0.0436	0.3966
-0.0172	0.3969
-0.0781	0.3957
-0.1389	0.3932
-0.1998	0.3892
-0.2607	0.3838
-0.3215	0.3771
-0.3824	0.3692
-0.4433	0.3601
-0.5041	0.3500
-0.5650	0.3389
-0.6259	0.3270
-0.6867	0.3143
-0.7476	0.3010
-0.8084	0.2872
-0.8693	0.2731
-0.9302	0.2587
-0.9910	0.2441
-1.0519	0.2295
-1.1128	0.2150
-1.1736	0.2007
-1.2345	0.1867
-1.2954	0.1730
-1.3562	0.1597
-1.4171	0.1469
-1.4779	0.1346
-1.5388	0.1229
-1.5997	0.1119
-1.6605	0.1014
-1.7214	0.0916
-1.7823	0.0824
-1.8431	0.0739
-1.9040	0.0660
-1.9649	0.0587
-2.0257	0.0521
-2.0866	0.0460
-2.1474	0.0405
-2.2083	0.0355
-2.2692	0.0310
-2.3300	0.0270
-2.3909	0.0234
-2.4518	0.0203
-2.5126	0.0174
-2.5735	0.0150
-2.6344	0.0128
-2.6952	0.0109
-2.7561	0.0092
-2.8169	0.0078
-2.8778	0.0066
-2.9387	0.0055
-2.9995	0.0046
-3.0604	0.0038
-3.1213	0.0032
-3.1821	0.0026
-3.2430	0.0022
-3.3039	0.0018
-Geno1	2
-250	150
-0
-1	6
-1	0.6650
-2	0.3350
-Trait2	1
-250	150
-1	5
-2	7	8
--3.0753	0.0037
--3.0078	0.0045
--2.9403	0.0055
--2.8728	0.0067
--2.8053	0.0081
--2.7378	0.0097
--2.6702	0.0116
--2.6027	0.0139
--2.5352	0.0165
--2.4677	0.0195
--2.4002	0.0229
--2.3327	0.0268
--2.2652	0.0313
--2.1977	0.0363
--2.1302	0.0420
--2.0627	0.0483
--1.9951	0.0553
--1.9276	0.0631
--1.8601	0.0716
--1.7926	0.0809
--1.7251	0.0910
--1.6576	0.1019
--1.5901	0.1135
--1.5226	0.1260
--1.4551	0.1392
--1.3876	0.1530
--1.3201	0.1675
--1.2525	0.1826
--1.1850	0.1981
--1.1175	0.2139
--1.0500	0.2300
--0.9825	0.2462
--0.9150	0.2623
--0.8475	0.2782
--0.7800	0.2937
--0.7125	0.3088
--0.6450	0.3231
--0.5775	0.3366
--0.5099	0.3490
--0.4424	0.3603
--0.3749	0.3703
--0.3074	0.3788
--0.2399	0.3858
--0.1724	0.3912
--0.1049	0.3948
--0.0374	0.3967
-0.0301	0.3968
-0.0976	0.3951
-0.1652	0.3916
-0.2327	0.3865
-0.3002	0.3796
-0.3677	0.3713
-0.4352	0.3614
-0.5027	0.3503
-0.5702	0.3379
-0.6377	0.3246
-0.7052	0.3103
-0.7727	0.2954
-0.8402	0.2799
-0.9078	0.2640
-0.9753	0.2479
-1.0428	0.2317
-1.1103	0.2156
-1.1778	0.1998
-1.2453	0.1842
-1.3128	0.1691
-1.3803	0.1546
-1.4478	0.1406
-1.5153	0.1274
-1.5829	0.1148
-1.6504	0.1031
-1.7179	0.0921
-1.7854	0.0819
-1.8529	0.0725
-1.9204	0.0640
-1.9879	0.0561
-2.0554	0.0490
-2.1229	0.0426
-2.1904	0.0369
-2.2579	0.0318
-2.3255	0.0273
-2.3930	0.0233
-2.4605	0.0198
-2.5280	0.0168
-2.5955	0.0141
-2.6630	0.0119
-2.7305	0.0099
-2.7980	0.0082
-2.8655	0.0068
-2.9330	0.0056
-3.0005	0.0046
-3.0681	0.0038
-3.1356	0.0031
-3.2031	0.0025
-3.2706	0.0020
-3.3381	0.0016
-3.4056	0.0013
-3.4731	0.0010
-3.5406	0.0008
-3.6081	0.0006
-3.6756	0.0005
-Trait4	1
-250	150
-3	2	4	6
-0
--3.2636	0.0025
--3.1926	0.0031
--3.1216	0.0039
--3.0506	0.0048
--2.9796	0.0059
--2.9086	0.0071
--2.8376	0.0086
--2.7666	0.0104
--2.6957	0.0125
--2.6247	0.0150
--2.5537	0.0178
--2.4827	0.0211
--2.4117	0.0248
--2.3407	0.0291
--2.2697	0.0340
--2.1987	0.0395
--2.1277	0.0456
--2.0567	0.0525
--1.9857	0.0601
--1.9148	0.0685
--1.8438	0.0777
--1.7728	0.0877
--1.7018	0.0986
--1.6308	0.1102
--1.5598	0.1226
--1.4888	0.1358
--1.4178	0.1497
--1.3468	0.1643
--1.2758	0.1794
--1.2049	0.1949
--1.1339	0.2108
--1.0629	0.2270
--0.9919	0.2432
--0.9209	0.2593
--0.8499	0.2751
--0.7789	0.2906
--0.7079	0.3055
--0.6369	0.3196
--0.5659	0.3328
--0.4949	0.3448
--0.4240	0.3557
--0.3530	0.3651
--0.2820	0.3730
--0.2110	0.3792
--0.1400	0.3838
--0.0690	0.3865
-0.0020	0.3874
-0.0730	0.3865
-0.1440	0.3838
-0.2150	0.3792
-0.2859	0.3730
-0.3569	0.3651
-0.4279	0.3557
-0.4989	0.3448
-0.5699	0.3328
-0.6409	0.3196
-0.7119	0.3055
-0.7829	0.2906
-0.8539	0.2752
-0.9249	0.2593
-0.9959	0.2432
-1.0668	0.2270
-1.1378	0.2109
-1.2088	0.1950
-1.2798	0.1794
-1.3508	0.1643
-1.4218	0.1498
-1.4928	0.1359
-1.5638	0.1227
-1.6348	0.1102
-1.7058	0.0986
-1.7767	0.0877
-1.8477	0.0777
-1.9187	0.0685
-1.9897	0.0601
-2.0607	0.0525
-2.1317	0.0456
-2.2027	0.0395
-2.2737	0.0340
-2.3447	0.0291
-2.4157	0.0248
-2.4867	0.0211
-2.5576	0.0178
-2.6286	0.0150
-2.6996	0.0125
-2.7706	0.0104
-2.8416	0.0086
-2.9126	0.0071
-2.9836	0.0059
-3.0546	0.0048
-3.1256	0.0039
-3.1966	0.0031
-3.2675	0.0025
-3.3385	0.0020
-3.4095	0.0016
-3.4805	0.0013
-3.5515	0.0010
-3.6225	0.0008
-3.6935	0.0006
-3.7645	0.0005
-3.8355	0.0004
-Trait1	1
-250	150
-1	6
-0
--3.6875	0.0005
--3.6097	0.0006
--3.5318	0.0008
--3.4540	0.0011
--3.3761	0.0014
--3.2983	0.0018
--3.2204	0.0024
--3.1425	0.0030
--3.0647	0.0038
--2.9868	0.0048
--2.9090	0.0061
--2.8311	0.0076
--2.7533	0.0094
--2.6754	0.0115
--2.5976	0.0141
--2.5197	0.0172
--2.4418	0.0208
--2.3640	0.0251
--2.2861	0.0300
--2.2083	0.0356
--2.1304	0.0421
--2.0526	0.0495
--1.9747	0.0577
--1.8969	0.0670
--1.8190	0.0773
--1.7411	0.0887
--1.6633	0.1011
--1.5854	0.1145
--1.5076	0.1290
--1.4297	0.1444
--1.3519	0.1608
--1.2740	0.1778
--1.1962	0.1956
--1.1183	0.2138
--1.0404	0.2323
--0.9626	0.2509
--0.8847	0.2694
--0.8069	0.2875
--0.7290	0.3050
--0.6512	0.3216
--0.5733	0.3371
--0.4955	0.3513
--0.4176	0.3639
--0.3397	0.3746
--0.2619	0.3834
--0.1840	0.3900
--0.1062	0.3944
--0.0283	0.3964
-0.0495	0.3961
-0.1274	0.3934
-0.2052	0.3884
-0.2831	0.3812
-0.3610	0.3719
-0.4388	0.3606
-0.5167	0.3476
-0.5945	0.3330
-0.6724	0.3172
-0.7502	0.3003
-0.8281	0.2826
-0.9059	0.2644
-0.9838	0.2458
-1.0617	0.2272
-1.1395	0.2088
-1.2174	0.1907
-1.2952	0.1731
-1.3731	0.1562
-1.4509	0.1401
-1.5288	0.1250
-1.6066	0.1108
-1.6845	0.0976
-1.7624	0.0855
-1.8402	0.0744
-1.9181	0.0644
-1.9959	0.0554
-2.0738	0.0474
-2.1516	0.0403
-2.2295	0.0340
-2.3073	0.0286
-2.3852	0.0238
-2.4631	0.0198
-2.5409	0.0163
-2.6188	0.0134
-2.6966	0.0109
-2.7745	0.0088
-2.8523	0.0071
-2.9302	0.0057
-3.0080	0.0045
-3.0859	0.0036
-3.1638	0.0028
-3.2416	0.0022
-3.3195	0.0017
-3.3973	0.0013
-3.4752	0.0010
-3.5530	0.0008
-3.6309	0.0006
-3.7087	0.0004
-3.7866	0.0003
-3.8645	0.0002
-3.9423	0.0002
-4.0202	0.0001
-4.0980	0.0001
diff --git a/sourcecodes/data/example1/Bqxnlevels.txt b/sourcecodes/data/example1/Bqxnlevels.txt
deleted file mode 100644
index 32457058..00000000
--- a/sourcecodes/data/example1/Bqxnlevels.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-Geno1	1	2
-Geno2	1	2
-
-
diff --git a/sourcecodes/data/example1/Bqxnnode.txt b/sourcecodes/data/example1/Bqxnnode.txt
deleted file mode 100644
index 45a4fb75..00000000
--- a/sourcecodes/data/example1/Bqxnnode.txt
+++ /dev/null
@@ -1 +0,0 @@
-8
diff --git a/sourcecodes/data/example1/Bqxnrows.txt b/sourcecodes/data/example1/Bqxnrows.txt
deleted file mode 100644
index 3bc92d44..00000000
--- a/sourcecodes/data/example1/Bqxnrows.txt
+++ /dev/null
@@ -1 +0,0 @@
-201
diff --git a/sourcecodes/data/example1/Bqxparameters.txt b/sourcecodes/data/example1/Bqxparameters.txt
deleted file mode 100644
index d1345709..00000000
--- a/sourcecodes/data/example1/Bqxparameters.txt
+++ /dev/null
@@ -1,34 +0,0 @@
-Geno1
-Discrete node with 2 states
-1	0.6650
-2	0.3350
-
-Geno2
-Discrete node with 2 states
-1	0.4300
-2	0.5700
-
-Trait1
-Continuous node
--0.0239	0.6720
-
-Trait2
-Continuous node
-0.0386	0.8009
-
-Trait3
-Continuous node
-0.0687	1.0420
-
-Trait4
-Continuous node
--0.0081	1.0133
-
-Trait5
-Continuous node
-0.0089	0.3181
-
-Trait6
-Continuous node
--0.1143	0.9091
-
diff --git a/sourcecodes/data/example1/Bqxparent.txt b/sourcecodes/data/example1/Bqxparent.txt
deleted file mode 100644
index b8626c4c..00000000
--- a/sourcecodes/data/example1/Bqxparent.txt
+++ /dev/null
@@ -1 +0,0 @@
-4
diff --git a/sourcecodes/data/example1/Bqxstructure_old.txt b/sourcecodes/data/example1/Bqxstructure_old.txt
deleted file mode 100644
index 7749d17e..00000000
--- a/sourcecodes/data/example1/Bqxstructure_old.txt
+++ /dev/null
@@ -1,7 +0,0 @@
-Geno1	0.6650	0.3350
-Trait2	0.0037	0.0045	0.0055	0.0067	0.0081	0.0097	0.0116	0.0139	0.0165	0.0195	0.0229	0.0268	0.0313	0.0363	0.0420	0.0483	0.0553	0.0631	0.0716	0.0809	0.0910	0.1019	0.1135	0.1260	0.1392	0.1530	0.1675	0.1826	0.1981	0.2139	0.2300	0.2462	0.2623	0.2782	0.2937	0.3088	0.3231	0.3366	0.3490	0.3603	0.3703	0.3788	0.3858	0.3912	0.3948	0.3967	0.3968	0.3951	0.3916	0.3865	0.3796	0.3713	0.3614	0.3503	0.3379	0.3246	0.3103	0.2954	0.2799	0.2640	0.2479	0.2317	0.2156	0.1998	0.1842	0.1691	0.1546	0.1406	0.1274	0.1148	0.1031	0.0921	0.0819	0.0725	0.0640	0.0561	0.0490	0.0426	0.0369	0.0318	0.0273	0.0233	0.0198	0.0168	0.0141	0.0119	0.0099	0.0082	0.0068	0.0056	0.0046	0.0038	0.0031	0.0025	0.0020	0.0016	0.0013	0.0010	0.0008	0.0006	0.0005
-Geno2	0.4300	0.5700
-Trait3	0.0086	0.0101	0.0119	0.0140	0.0163	0.0190	0.0220	0.0254	0.0292	0.0335	0.0383	0.0435	0.0494	0.0558	0.0628	0.0704	0.0786	0.0875	0.0970	0.1072	0.1181	0.1295	0.1415	0.1541	0.1672	0.1807	0.1946	0.2088	0.2232	0.2378	0.2524	0.2668	0.2811	0.2951	0.3086	0.3216	0.3338	0.3453	0.3559	0.3654	0.3738	0.3811	0.3870	0.3916	0.3948	0.3966	0.3969	0.3957	0.3932	0.3892	0.3838	0.3771	0.3692	0.3601	0.3500	0.3389	0.3270	0.3143	0.3010	0.2872	0.2731	0.2587	0.2441	0.2295	0.2150	0.2007	0.1867	0.1730	0.1597	0.1469	0.1346	0.1229	0.1119	0.1014	0.0916	0.0824	0.0739	0.0660	0.0587	0.0521	0.0460	0.0405	0.0355	0.0310	0.0270	0.0234	0.0203	0.0174	0.0150	0.0128	0.0109	0.0092	0.0078	0.0066	0.0055	0.0046	0.0038	0.0032	0.0026	0.0022	0.0018
-Trait4	0.0025	0.0031	0.0039	0.0048	0.0059	0.0071	0.0086	0.0104	0.0125	0.0150	0.0178	0.0211	0.0248	0.0291	0.0340	0.0395	0.0456	0.0525	0.0601	0.0685	0.0777	0.0877	0.0986	0.1102	0.1226	0.1358	0.1497	0.1643	0.1794	0.1949	0.2108	0.2270	0.2432	0.2593	0.2751	0.2906	0.3055	0.3196	0.3328	0.3448	0.3557	0.3651	0.3730	0.3792	0.3838	0.3865	0.3874	0.3865	0.3838	0.3792	0.3730	0.3651	0.3557	0.3448	0.3328	0.3196	0.3055	0.2906	0.2752	0.2593	0.2432	0.2270	0.2109	0.1950	0.1794	0.1643	0.1498	0.1359	0.1227	0.1102	0.0986	0.0877	0.0777	0.0685	0.0601	0.0525	0.0456	0.0395	0.0340	0.0291	0.0248	0.0211	0.0178	0.0150	0.0125	0.0104	0.0086	0.0071	0.0059	0.0048	0.0039	0.0031	0.0025	0.0020	0.0016	0.0013	0.0010	0.0008	0.0006	0.0005	0.0004
-Trait6	0.0005	0.0006	0.0008	0.0010	0.0013	0.0016	0.0020	0.0025	0.0031	0.0038	0.0046	0.0057	0.0069	0.0084	0.0101	0.0121	0.0145	0.0172	0.0204	0.0240	0.0282	0.0329	0.0382	0.0441	0.0508	0.0582	0.0664	0.0753	0.0851	0.0957	0.1071	0.1193	0.1323	0.1461	0.1605	0.1755	0.1910	0.2069	0.2232	0.2396	0.2560	0.2722	0.2881	0.3036	0.3184	0.3324	0.3454	0.3572	0.3677	0.3768	0.3843	0.3901	0.3942	0.3965	0.3969	0.3955	0.3923	0.3873	0.3806	0.3722	0.3624	0.3512	0.3387	0.3252	0.3108	0.2956	0.2799	0.2638	0.2474	0.2310	0.2147	0.1986	0.1829	0.1676	0.1529	0.1388	0.1255	0.1129	0.1011	0.0901	0.0799	0.0706	0.0620	0.0542	0.0472	0.0409	0.0353	0.0303	0.0259	0.0221	0.0187	0.0157	0.0132	0.0110	0.0092	0.0076	0.0062	0.0051	0.0042	0.0034	0.0027
-Trait1	0.0005	0.0006	0.0008	0.0011	0.0014	0.0018	0.0024	0.0030	0.0038	0.0048	0.0061	0.0076	0.0094	0.0115	0.0141	0.0172	0.0208	0.0251	0.0300	0.0356	0.0421	0.0495	0.0577	0.0670	0.0773	0.0887	0.1011	0.1145	0.1290	0.1444	0.1608	0.1778	0.1956	0.2138	0.2323	0.2509	0.2694	0.2875	0.3050	0.3216	0.3371	0.3513	0.3639	0.3746	0.3834	0.3900	0.3944	0.3964	0.3961	0.3934	0.3884	0.3812	0.3719	0.3606	0.3476	0.3330	0.3172	0.3003	0.2826	0.2644	0.2458	0.2272	0.2088	0.1907	0.1731	0.1562	0.1401	0.1250	0.1108	0.0976	0.0855	0.0744	0.0644	0.0554	0.0474	0.0403	0.0340	0.0286	0.0238	0.0198	0.0163	0.0134	0.0109	0.0088	0.0071	0.0057	0.0045	0.0036	0.0028	0.0022	0.0017	0.0013	0.0010	0.0008	0.0006	0.0004	0.0003	0.0002	0.0002	0.0001	0.0001
diff --git a/sourcecodes/data/example1/Bqxthr.txt b/sourcecodes/data/example1/Bqxthr.txt
deleted file mode 100644
index 2eb3c4fe..00000000
--- a/sourcecodes/data/example1/Bqxthr.txt
+++ /dev/null
@@ -1 +0,0 @@
-0.5
diff --git a/sourcecodes/data/example1/Bqxtier.txt b/sourcecodes/data/example1/Bqxtier.txt
deleted file mode 100644
index bc94239b..00000000
--- a/sourcecodes/data/example1/Bqxtier.txt
+++ /dev/null
@@ -1 +0,0 @@
-3,Tier1,0,Tier2,0,Tier3,0,
\ No newline at end of file
diff --git a/sourcecodes/data/example1/Bqxtype.txt b/sourcecodes/data/example1/Bqxtype.txt
deleted file mode 100644
index 285a68af..00000000
--- a/sourcecodes/data/example1/Bqxtype.txt
+++ /dev/null
@@ -1,2 +0,0 @@
-Geno1	Geno2	Trait1	Trait2	Trait3	Trait4	Trait5	Trait6
-2	2	1	1	1	1	1	1	
diff --git a/sourcecodes/data/example1/Bqxwhite.txt b/sourcecodes/data/example1/Bqxwhite.txt
deleted file mode 100644
index 83e81b8b..00000000
--- a/sourcecodes/data/example1/Bqxwhite.txt
+++ /dev/null
@@ -1 +0,0 @@
-From	To
diff --git a/sourcecodes/data/example1/old/Bqxrun_initialstructure.sh b/sourcecodes/data/example1/old/Bqxrun_initialstructure.sh
deleted file mode 100644
index a8a8ebe0..00000000
--- a/sourcecodes/data/example1/old/Bqxrun_initialstructure.sh
+++ /dev/null
@@ -1,38 +0,0 @@
-#!/bin/sh
-# script for execution of deployed applications
-#
-# Sets up the MCR environment for the current $ARCH and executes 
-# the specified command.
-#
-exe_name=$0
-exe_dir=`dirname "$0"`
-echo "------------------------------------------"
-if [ "x$1" = "x" ]; then
-  echo Usage:
-  echo    $0 \<deployedMCRroot\> args
-else
-  echo Setting up environment variables
-  MCRROOT="$1"
-  echo ---
-  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
-  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
-  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
-	MCRJRE=${MCRROOT}/sys/java/jre/glnxa64/jre/lib/amd64 ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/native_threads ; 
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/server ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE}/client ;
-	LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRJRE} ;  
-  XAPPLRESDIR=${MCRROOT}/X11/app-defaults ;
-  export LD_LIBRARY_PATH;
-  export XAPPLRESDIR;
-  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
-  shift 1
-  args=
-  while [ $# -gt 0 ]; do
-      token=`echo "$1" | sed 's/ /\\\\ /g'`   # Add blackslash before each blank
-      args="${args} ${token}" 
-      shift
-  done
-  "${exe_dir}"/initialstructure Bqx
-fi
-exit
diff --git a/sourcecodes/data/example1/standardized_data.txt b/sourcecodes/data/example1/standardized_data.txt
deleted file mode 100644
index 743e8b02..00000000
--- a/sourcecodes/data/example1/standardized_data.txt
+++ /dev/null
@@ -1,201 +0,0 @@
-Trait5	Geno2	Trait6	Trait3	Geno1	Trait2	Trait4	Trait1	
-1.8453	2	-0.70749	-1.3361	2	1.5443	-0.43784	0.72827
-0.9605	1	0.85158	1.5164	1	-1.1632	1.0263	-0.11408
--0.63336	1	0.53936	1.1602	1	-0.74229	1.4011	-1.541
-1.3355	2	-1.7216	-0.76715	1	0.12195	-0.66179	0.099211
-0.36111	2	-0.74876	-0.98283	1	-2.0753	-1.2335	-0.99244
--1.177	1	0.51257	0.84261	1	0.065663	1.2658	-0.64654
-0.076305	1	1.5888	1.7606	1	-0.66331	1.4736	0.39057
--0.53841	2	0.11031	-1.5038	1	0.23456	-0.060179	0.14097
--0.59968	1	0.48834	1.0431	1	-0.59377	0.22579	-0.99932
-0.37839	1	1.293	0.49142	1	-1.2855	0.37537	0.50786
--0.98262	1	1.6051	0.57702	2	0.44497	0.92494	1.9396
--0.32154	1	1.0249	0.77512	1	-0.62075	0.32547	1.8129
-0.094471	1	1.0318	1.5671	2	-0.60413	0.75183	-1.4864
--0.2677	2	-1.3762	-0.039045	2	0.61004	-0.20296	-0.34315
-1.45	2	0.22686	-0.18131	1	-0.5462	-0.61255	-0.83409
--0.94296	2	-1.0223	-1.1896	1	-0.4021	-1.2644	-1.2822
--0.65504	2	-2.6825	-1.035	1	0.25776	-1.4615	0.84597
-1.3635	1	1.5647	0.59499	2	1.372	1.0621	0.74498
-0.60321	1	0.68692	1.4714	2	0.81867	1.711	0.90082
--0.5142	2	-1.0962	-1.5522	1	-0.04535	-1.2401	-0.62273
--1.2303	1	0.82027	1.0532	2	-0.12811	1.344	0.60516
-0.84008	2	-0.7159	-0.44987	1	-0.56344	-1.5572	1.0854
-0.47761	1	1.5622	1.2168	1	-0.30596	1.1251	-1.3723
--1.3546	2	-0.7484	-0.096654	1	0.03293	0.23078	0.81604
--0.32954	2	-1.6183	-0.57119	1	-0.9399	-1.5734	-0.76341
-0.57841	1	0.24378	0.681	1	-0.7778	1.305	0.77773
-0.11524	2	-0.85367	0.35424	2	2.3096	0.75697	1.7572
-1.1463	2	0.0096586	-0.25741	1	-0.52081	-1.5513	0.64513
--1.3926	2	-0.88863	-0.68795	2	0.0060478	-0.43763	0.97179
--0.34841	1	1.0004	0.23941	1	-0.83161	0.87503	-0.88918
-0.79176	1	0.59541	1.0092	1	-1.9591	0.77295	0.31259
--1.7691	2	0.055429	-1.1837	2	1.1172	-0.091192	1.3241
-0.23812	2	-0.13588	-0.98943	1	-0.041159	-0.43704	-0.39754
-1.4262	1	0.46298	1.327	1	0.15808	1.1741	-0.073642
-1.3584	1	1.5511	0.49802	1	-0.96618	-0.037384	0.26987
--0.45407	2	-0.11918	-0.20984	1	-0.84764	0.68704	0.15725
-1.3502	1	1.1228	1.7003	1	-0.34181	1.3601	0.19859
-0.51265	2	0.059243	-0.61724	1	-1.2675	-1.2719	-1.5483
-1.6144	2	-1.6767	-0.4403	2	-0.7614	0.046076	-0.6741
--0.99883	2	-0.76648	0.33667	2	0.97148	-1.1389	-0.11754
-0.24789	1	0.4729	1.0484	1	-0.62124	0.34555	-0.08916
-1.6957	2	0.014711	-1.3474	1	-0.026706	-1.4606	-1.4336
--0.54533	1	0.88108	1.3793	1	-0.29202	1.3706	-1.1708
--1.7381	1	0.16189	0.96739	1	-0.77438	0.96572	1.2346
--0.844	2	-1.0713	-0.50552	2	1.1809	-0.13536	3.098
--1.8946	1	0.83747	0.55294	1	0.21042	0.78685	-0.41553
--1.2313	1	0.77672	1.7131	1	-0.38666	1.694	-0.79692
--0.7674	2	-1.151	-0.091205	1	0.9644	-0.57897	0.21389
-0.72057	2	-0.34897	-0.95934	1	-1.3832	-0.57841	-0.10718
-1.2095	2	0.5788	-0.77644	2	0.86817	-0.56945	0.13481
-0.09126	1	1.0274	0.59902	1	0.094442	0.30723	1.2562
--1.7398	1	0.67041	0.82202	1	-0.30164	0.94827	-0.94259
--0.66818	1	0.49087	1.2694	1	-0.18615	0.78217	-1.3239
--0.2258	2	-1.4193	-1.44	1	-1.5421	-1.6216	-0.34851
-1.4939	2	0.12307	-0.97417	2	-1.9058	-1.6405	-2.6645
-0.59683	2	-0.27561	-1.5921	1	-0.012339	-1.033	0.22517
-0.32502	1	1.8115	0.59888	1	-0.78178	0.37072	-1.5597
-0.33627	2	-0.54037	-0.092937	1	-0.23801	-0.28432	0.25627
--0.71947	2	-0.96292	-0.87226	2	1.0454	-1.1866	-1.1152
-0.7723	2	-0.74389	-0.31293	2	0.56738	-1.597	0.21919
-1.1117	1	0.22881	0.53378	1	0.28362	0.62928	-0.56731
--0.37072	1	1.1896	1.2033	2	1.7889	1.9867	-1.1364
-1.9537	2	-1.2797	-1.1399	1	-0.45995	-1.6282	-0.33873
--1.1043	1	1.0871	2.3039	2	-0.27611	0.615	0.27237
--1.3202	1	0.86019	1.2914	2	0.27461	0.94779	-0.83546
--0.46478	1	1.29	0.43419	1	0.6874	1.6104	-0.36581
--1.1858	2	-1.2069	-0.56475	1	0.18024	-0.54017	0.23717
-0.32802	1	0.87458	1.8613	2	0.40544	1.1088	1.7576
-1.1735	2	-0.66747	-1.6202	1	0.53589	-0.9149	0.45212
--1.16	1	1.0838	0.61868	2	0.72867	1.3378	0.2647
-1.462	2	0.19509	-1.4192	1	0.56635	-0.85302	0.33371
-1.0695	1	0.21919	1.322	2	1.3441	1.1727	0.76002
--0.22703	1	1.1363	0.54703	1	-0.48891	1.2236	-0.91644
-1.3458	2	-0.6068	-1.7825	1	-0.68775	-0.89217	0.99689
--0.091249	1	0.68469	0.60839	1	-0.6527	0.58896	-0.24017
-0.67203	1	0.72395	1.1051	1	-1.4197	0.29802	0.188
-0.34537	1	1.2845	1.4258	1	-0.6173	1.0233	-0.24233
--1.0761	2	-1.2815	-0.94371	1	-1.4633	-0.69107	-0.8715
--0.20711	1	1.0174	0.69566	1	-0.58432	0.15352	-0.49345
-0.59929	1	1.5069	1.8419	1	-1.4583	-0.031663	0.0055113
--0.11492	1	1.2367	1.2191	1	-0.51421	1.1523	1.884
-1.2751	2	-0.52411	-0.64346	2	2.0614	-0.0023541	-0.77991
-0.90981	1	1.1284	1.2152	2	2.6756	1.2409	-0.0084945
--1.9542	2	-1.221	-1.4163	2	1.2826	-0.010965	1.0953
-1.7193	1	0.30492	1.2836	2	0.61499	0.56464	0.15443
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