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authorziejd22017-09-28 15:04:40 -0500
committerziejd22017-09-28 15:04:40 -0500
commit8070dc963753142bb86c4ed698d91fd623ed28e7 (patch)
treed0f6dd8fc46a49b819aa55c1a90faa14d8448883 /sourcecodes/bnt-master/docs/install.html
parent7cc31810d53176e805532b2789955f4eedbce6bb (diff)
downloadBNW-8070dc963753142bb86c4ed698d91fd623ed28e7.tar.gz
BNW using Octave instead of Matlab.
This version of BNW should perform the same as the original version. The only difference is that it uses Octave instead of Matlab when running BayesNet Toolbox during parameter learning.

I am calling this BNW_1.02. It can be accessed at:
compbio.uthsc.edu/BNW_1.02
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+To install, just unzip FullBNT.zip, start Matlab, and proceed as
+follows
+<pre>
+>> cd C:\kmurphy\FullBNT\FullBNT-1.0.4
+>> addpath(genpathKPM(pwd))
+
+Warning: Function C:\kmurphy\FullBNT\FullBNT-1.0.4\KPMtools\isvector.m has the same name as a MATLAB builtin. We suggest you rename the function to avoid a potential name conflict.
+> In path at 110
+  In addpath at 89
+Warning: Function C:\kmurphy\FullBNT\FullBNT-1.0.4\KPMtools\isscalar.m has the same name as a MATLAB builtin. We suggest you rename the function to avoid a potential name conflict.
+> In path at 110
+  In addpath at 89
+Warning: Function C:\kmurphy\FullBNT\FullBNT-1.0.4\KPMtools\assert.m has the same name as a MATLAB builtin. We suggest you rename the function to avoid a potential name conflict.
+> In path at 110
+  In addpath at 89
+
+>> test_BNT
+</pre>
+The genpathKPM function is like the builtin genpath function, but it
+does not add directories called 'Old' to the path, thus preventing old
+versions of functions accidently shadowing new ones.
+The warnings occur because Matlab 7 added functions with the same
+names as my functions. The BNT versions will shadow the built-in ones,
+but this should be harmless.
+<p>
+Note: the functions installC_BNT etc. are not needed anymore: all C
+code has either been removed or is unnecessary.
+<p> Note: as mentioned above, with new versions of matlab you
+will get lots of warning messages, but everything should still work.
+<p> Note: Cory Reith tells me that, as of
+15 Sep 2009,  octave 3.2.2 can run most of BNT.
+Please send email to crieth@ucsd.edu if you have questions.