BNW using Octave instead of Matlab.

This version of BNW should perform the same as the original version. The only difference is that it uses Octave instead of Matlab when running BayesNet Toolbox during parameter learning.

I am calling this BNW_1.02. It can be accessed at:
compbio.uthsc.edu/BNW_1.02

1 files changed, 60 insertions, 0 deletions

diff --git a/sourcecodes/bnt-master/KPMtools/polygon_intersect.m b/sourcecodes/bnt-master/KPMtools/polygon_intersect.m
new file mode 100644
index 00000000..9289f612
--- /dev/null
+++ b/sourcecodes/bnt-master/KPMtools/polygon_intersect.m
@@ -0,0 +1,60 @@
+function [is,S] = isintpl(x1,y1,x2,y2)
+% ISINTPL Check for intersection of polygons.
+%	[IS,S] = ISINTPL(X1,Y1,X2,Y2) Accepts coordinates
+%	X1,Y1 and X2, Y2 of two polygons. Returns scalar
+%	IS equal to 1 if these polygons intersect each other
+%	and 0 if they do not.
+%	Also returns Boolean matrix S of the size length(X1)
+%	by length(X2) so that {ij} element of which is 1 if 
+%	line segments i to i+1 of the first polygon and 
+%	j to j+1 of the second polygon intersect each other,
+%	0 if they don't and .5 if they "touch" each other.
+
+%  Copyright (c) 1995 by Kirill K. Pankratov,
+%       kirill@plume.mit.edu.
+%       06/20/95, 08/25/95
+
+
+ % Handle input ...................................
+if nargin==0, help isintpl, return, end
+if nargin<4
+  error(' Not enough input arguments ')
+end
+
+ % Make column vectors and check sizes ............
+x1 = x1(:); y1 = y1(:);
+x2 = x2(:); y2 = y2(:);
+l1 = length(x1);
+l2 = length(x2);
+if length(y1)~=l1 | length(y2)~=l2
+  error('(X1,Y1) and (X2,Y2) must pair-wise have the same length.')
+end
+
+ % Quick exit if empty
+if l1<1 | l2<1, is = []; S = []; return, end
+
+ % Check if their ranges are intersecting .........
+lim1 = [min(x1) max(x1)]';
+lim2 = [min(x2) max(x2)]';
+isx = interval(lim1,lim2);  % X-ranges
+lim1 = [min(y1) max(y1)]';
+lim2 = [min(y2) max(y2)]';
+isy = interval(lim1,lim2);  % Y-ranges
+is = isx & isy;
+S = zeros(l2,l1);
+
+if ~is, return, end  % Early exit if disparate limits
+
+ % Indexing .......................................
+[i11,i12] = meshgrid(1:l1,1:l2);
+[i21,i22] = meshgrid([2:l1 1],[2:l2 1]);
+i11 = i11(:); i12 = i12(:);
+i21 = i21(:); i22 = i22(:);
+
+ % Calculate matrix of intersections ..............
+S(:) = iscross([x1(i11) x1(i21)]',[y1(i11) y1(i21)]',...
+               [x2(i12) x2(i22)]',[y2(i12) y2(i22)]')';
+
+S = S';
+is  = any(any(S));
+