BNW using Octave instead of Matlab.

This version of BNW should perform the same as the original version. The only difference is that it uses Octave instead of Matlab when running BayesNet Toolbox during parameter learning.

I am calling this BNW_1.02. It can be accessed at:
compbio.uthsc.edu/BNW_1.02

3 files changed, 178 insertions, 0 deletions

diff --git a/sourcecodes/bnt-master/KPMtools/CVS/Entries b/sourcecodes/bnt-master/KPMtools/CVS/Entries
new file mode 100644
index 00000000..041ea399
--- /dev/null
+++ b/sourcecodes/bnt-master/KPMtools/CVS/Entries
@@ -0,0 +1,176 @@
+/README.txt/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/approx_unique.m/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/approxeq.m/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/argmax.m/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/argmin.m/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/asdemo.html/1.1.1.1/Wed Mar 30 19:59:00 2005//
+/asdemo.m/1.1.1.1/Sun Mar 27 02:51:24 2005//
+/asort.m/1.1.1.1/Fri May 13 20:52:22 2005//
+/assert.m/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/assignEdgeNums.m/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/assign_cols.m/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/axis_pct.m/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/bipartiteMatchingDemo.m/1.1.1.1/Mon May  9 16:47:32 2005//
+/bipartiteMatchingDemoPlot.m/1.1.1.1/Mon May  9 04:45:10 2005//
+/bipartiteMatchingHungarian.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/bipartiteMatchingIntProg.m/1.1.1.1/Mon May  9 05:25:10 2005//
+/block.m/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/cell2matPad.m/1.1.1.1/Tue Jun 28 01:30:44 2005//
+/cell2num.m/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/centeringMatrix.m/1.1.1.1/Sun May  8 22:48:48 2005//
+/checkpsd.m/1.1.1.1/Fri Feb  7 02:25:30 2003//
+/chi2inv.m/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/choose.m/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/collapse_mog.m/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/colmult.c/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/colmult.mexglx/1.1.1.1/Tue Apr 26 02:30:30 2005//
+/computeROC.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/compute_counts.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/conf2mahal.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/cross_entropy.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/dirKPM.m/1.1.1.1/Fri May 13 20:52:22 2005//
+/div.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/draw_circle.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/draw_ellipse.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/draw_ellipse_axes.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/em_converged.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/entropy.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/exportfig.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/extend_domain_table.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/factorial.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/filepartsLast.m/1.1.1.1/Mon May 30 22:08:06 2005//
+/find_equiv_posns.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/fullfileKPM.m/1.1.1.1/Sat Aug 27 01:08:50 2005//
+/genpathKPM.m/1.1.1.1/Wed May 25 19:11:42 2005//
+/hash_add.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/hash_del.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/hash_lookup.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/hsvKPM.m/1.1.1.1/Mon May  2 20:19:00 2005//
+/hungarian.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/image_rgb.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/imresizeAspect.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/ind2subv.c/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/ind2subv.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/initFigures.m/1.1.1.1/Wed Jun  1 04:49:22 2005//
+/installC_KPMtools.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/is_psd.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/is_stochastic.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/isemptycell.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/isposdef.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/isscalar.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/isvector.m/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/junk.c/1.1.1.1/Tue Apr 26 02:30:32 2005//
+/loadcell.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/logb.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/logdet.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/logsum.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/logsum_simple.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/logsum_test.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/logsumexp.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/logsumexpv.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/mahal2conf.m/1.1.1.1/Wed Apr 27 17:58:32 2005//
+/marg_table.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/marginalize_table.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/matprint.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/max_mult.c/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/max_mult.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/mexutil.c/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/mexutil.h/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/mk_multi_index.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/mk_stochastic.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/mkdirKPM.m/1.1.1.1/Mon May  9 22:20:22 2005//
+/montageKPM.m/1.1.1.1/Wed Jun  1 19:39:54 2005//
+/montageKPM2.m/1.1.1.1/Wed Jul  6 19:32:54 2005//
+/montageKPM3.m/1.1.1.1/Tue Jun 28 01:35:44 2005//
+/mult_by_table.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/myintersect.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/myismember.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/myones.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/myplot.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/myrand.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/myrepmat.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/myreshape.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/mysetdiff.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/mysize.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/mysubset.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/mysymsetdiff.m/1.1.1.1/Tue Apr 26 02:30:34 2005//
+/myunion.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/nchoose2.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/ncols.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/nonmaxsup.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/normalise.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/normaliseC.c/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/normaliseC.dll/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/normalize.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/nrows.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/num2strcell.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/optimalMatching.m/1.1.1.1/Mon May  9 22:20:22 2005//
+/optimalMatchingTest.m/1.1.1.1/Mon May  9 22:20:22 2005//
+/partitionData.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/partition_matrix_vec.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/pca_kpm.m/1.1.1.1/Tue Sep 13 05:18:28 2005//
+/pca_netlab.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/pick.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/plotBox.m/1.1.1.1/Mon May 30 06:01:56 2005//
+/plotColors.m/1.1.1.1/Thu May 26 01:31:22 2005//
+/plotROC.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/plotROCkpm.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/plot_axis_thru_origin.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/plot_ellipse.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/plot_matrix.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/plot_polygon.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/plotcov2.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/plotcov2New.m/1.1.1.1/Mon Jul 11 19:07:28 2005//
+/plotcov3.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/plotgauss1d.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/plotgauss2d.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/plotgauss2d_old.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/polygon_area.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/polygon_centroid.m/1.1.1.1/Tue Apr 26 02:30:36 2005//
+/polygon_intersect.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/previewfig.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/process_options.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/rand_psd.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/rectintC.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/rectintLoopC.c/1.1.1.1/Sun Jun  5 18:46:40 2005//
+/rectintLoopC.dll/1.1.1.1/Sun Jun  5 18:46:40 2005//
+/rectintLoopC.mexglx/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/rectintSparse.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/rectintSparseC.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/rectintSparseLoopC.c/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/rectintSparseLoopC.dll/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/repmatC.c/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/repmatC.dll/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/repmatC.mexglx/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/rgb2grayKPM.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/rnd_partition.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/rotate_xlabel.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/safeStr.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/sampleUniformInts.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/sample_discrete.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/set_xtick_label.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/set_xtick_label_demo.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/setdiag.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/softeye.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/sort_evec.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/splitLongSeqIntoManyShort.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/sprintf_intvec.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/sqdist.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/strmatch_multi.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/strmatch_substr.m/1.1.1.1/Tue Apr 26 02:30:38 2005//
+/strsplit.m/1.1.1.1/Tue May  3 19:01:46 2005//
+/subplot2.m/1.1.1.1/Tue Apr 26 02:30:40 2005//
+/subplot3.m/1.1.1.1/Tue Apr 26 02:30:40 2005//
+/subsets.m/1.1.1.1/Tue Apr 26 02:30:40 2005//
+/subsets1.m/1.1.1.1/Mon May  9 22:20:22 2005//
+/subsetsFixedSize.m/1.1.1.1/Mon May  9 02:55:36 2005//
+/subv2ind.c/1.1.1.1/Tue Apr 26 02:30:40 2005//
+/subv2ind.m/1.1.1.1/Tue Apr 26 02:30:40 2005//
+/sumv.m/1.1.1.1/Tue Apr 26 02:30:40 2005//
+/suptitle.m/1.1.1.1/Tue Apr 26 02:30:40 2005//
+/unaryEncoding.m/1.1.1.1/Tue Apr 26 02:30:40 2005//
+/wrap.m/1.1.1.1/Tue Apr 26 02:30:40 2005//
+/xticklabel_rotate90.m/1.1.1.1/Tue Apr 26 02:30:40 2005//
+/zipload.m/1.1.1.1/Tue Apr 26 02:30:40 2005//
+/zipsave.m/1.1.1.1/Tue Apr 26 02:30:40 2005//
+D
diff --git a/sourcecodes/bnt-master/KPMtools/CVS/Repository b/sourcecodes/bnt-master/KPMtools/CVS/Repository
new file mode 100644
index 00000000..0b5b553e
--- /dev/null
+++ b/sourcecodes/bnt-master/KPMtools/CVS/Repository
@@ -0,0 +1 @@
+FullBNT/KPMtools
diff --git a/sourcecodes/bnt-master/KPMtools/CVS/Root b/sourcecodes/bnt-master/KPMtools/CVS/Root
new file mode 100644
index 00000000..f3bd14a6
--- /dev/null
+++ b/sourcecodes/bnt-master/KPMtools/CVS/Root
@@ -0,0 +1 @@
+:ext:nsaunier@bnt.cvs.sourceforge.net:/cvsroot/bnt