BNW using Octave instead of Matlab.

This version of BNW should perform the same as the original version. The only difference is that it uses Octave instead of Matlab when running BayesNet Toolbox during parameter learning.

I am calling this BNW_1.02. It can be accessed at:
compbio.uthsc.edu/BNW_1.02

1 files changed, 68 insertions, 0 deletions

diff --git a/sourcecodes/bnt-master/GraphViz/draw_dbn_test.m b/sourcecodes/bnt-master/GraphViz/draw_dbn_test.m
new file mode 100644
index 00000000..7d7c2367
--- /dev/null
+++ b/sourcecodes/bnt-master/GraphViz/draw_dbn_test.m
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+% TEST_LAYOUT_DBN		Script to test some DBN layouts
+%
+
+% Change History :
+% Date		Time		Prog	Note
+% 17-Apr-2000	 2:40 PM	ATC	Created under MATLAB 5.3.1.29215a (R11.1)
+
+% ATC = Ali Taylan Cemgil,
+% SNN - University of Nijmegen, Department of Medical Physics and Biophysics
+% e-mail : cemgil@mbfys.kun.nl 
+
+disp('draw mhmm1')
+clf
+set(gcf, 'pos', [0   0   1024   600]);
+
+intra = zeros(3);
+intra(1,[2 3]) = 1;
+intra(2,3) = 1;
+inter = zeros(3);
+inter(1,1) = 1;
+n = 3;
+dnodes = [1 2];
+isbox = zeros(n,1); isbox(dnodes) = 1;
+unfold = 4;
+draw_dbn(intra, inter, 0, unfold, {'Q', 'M', 'Y'}, isbox);
+
+
+pause
+clf
+disp('draw water1')
+bnet = mk_water_dbn;
+unfold = 3;
+flip = 1;
+[dummyx, dummyy, h] = draw_dbn(bnet.intra, bnet.inter, flip, unfold);
+
+col = rand(size(h,1),3);
+for i=1:length(h),
+  col = rand(1,3);
+  % patches
+  set(h(i,2),'facecolor', col); drawnow;
+  % text
+  set(h(i,1),'color', 1-col); drawnow;
+end;
+
+
+pause
+clf
+disp('draw BAT static')
+% This requires BNT
+
+%sz = get(0, 'ScreenSize');
+%sv = get(gcf, 'pos');
+%set(gcf, 'units','pix','pos', sz);
+[bnet, names] = mk_bat_dbn;
+N = size(bnet.intra,1);
+G = [bnet.intra bnet.inter;
+     zeros(N,N) bnet.intra];
+names2 = names;
+for i=1:N
+  names2{i} = sprintf('%s(1)', names{i});
+  names2{i+N} = sprintf('%s(2)', names{i});
+end
+draw_graph(G, names2);
+
+pause
+disp('draw bat dbn')
+clf
+draw_dbn(bnet.intra, bnet.inter, 0, 2, names2);