BNW using Octave instead of Matlab.

This version of BNW should perform the same as the original version. The only difference is that it uses Octave instead of Matlab when running BayesNet Toolbox during parameter learning.

I am calling this BNW_1.02. It can be accessed at:
compbio.uthsc.edu/BNW_1.02

4 files changed, 53 insertions, 0 deletions

diff --git a/sourcecodes/bnt-master/BNT/general/CVS/Entries b/sourcecodes/bnt-master/BNT/general/CVS/Entries
new file mode 100644
index 00000000..de13cc9a
--- /dev/null
+++ b/sourcecodes/bnt-master/BNT/general/CVS/Entries
@@ -0,0 +1,50 @@
+/add_ev_to_dmarginal.m/1.1.1.1/Thu Jun 27 20:34:32 2002//
+/add_evidence_to_gmarginal.m/1.1.1.1/Wed May 29 15:59:56 2002//
+/bnet_to_fgraph.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/compute_fwd_interface.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/compute_interface_nodes.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/compute_joint_pot.m/1.1.1.1/Mon Jun  7 15:50:34 2004//
+/compute_minimal_interface.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/convert_dbn_CPDs_to_pots.m/1.1.1.1/Fri Nov 22 22:35:00 2002//
+/convert_dbn_CPDs_to_tables.m/1.1.1.1/Thu Jan 23 18:44:50 2003//
+/convert_dbn_CPDs_to_tables1.m/1.1.1.1/Thu Jan 23 18:49:48 2003//
+/convert_dbn_CPDs_to_tables_slow.m/1.1.1.1/Wed May 29 15:59:58 2002//
+/dbn_to_bnet.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/dbn_to_hmm.m/1.1.1.1/Sun Feb  2 00:23:38 2003//
+/determine_elim_constraints.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/dispcpt.m/1.1.1.1/Wed May 29 15:59:58 2002//
+/do_intervention.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/dsep.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/dsep_test.m/1.1.1.1/Sat Jan 18 23:10:16 2003//
+/enumerate_scenarios.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/fgraph_to_bnet.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/hodbn_to_bnet.m/1.1.1.1/Wed Jul 24 14:48:06 2002//
+/is_mnet.m/1.1.1.1/Sun Jun 16 20:01:22 2002//
+/linear_gaussian_to_cpot.m/1.1.1.1/Wed May 29 15:59:58 2002//
+/log_lik_complete.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/log_marg_lik_complete.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/mk_bnet.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/mk_dbn.m/1.1.1.1/Sat Feb  1 19:42:14 2003//
+/mk_fgraph.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/mk_fgraph_given_ev.m/1.1.1.1/Mon Jun 24 18:56:26 2002//
+/mk_higher_order_dbn.m/1.1.1.1/Tue Jul 23 13:17:04 2002//
+/mk_limid.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/mk_mnet.m/1.1.1.1/Sun Jun 16 19:52:12 2002//
+/mk_mrf2.m/1.1.1.1/Tue Dec 31 22:06:48 2002//
+/mk_mutilated_samples.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/mk_named_CPT.m/1.1.1.1/Tue Mar 30 17:18:54 2004//
+/mk_slice_and_half_dbn.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/noisyORtoTable.m/1.1.1.1/Mon Aug  2 22:05:58 2004//
+/partition_dbn_nodes.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/partition_matrix_vec_3.m/1.1.1.1/Wed May 29 15:59:58 2002//
+/sample_bnet.m/1.1.1.1/Thu Jun 10 01:17:46 2004//
+/sample_bnet_nocell.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/sample_dbn.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/score_bnet_complete.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/shrink_obs_dims_in_gaussian.m/1.1.1.1/Wed May 29 15:59:58 2002//
+/shrink_obs_dims_in_table.m/1.1.1.1/Wed May 29 15:59:58 2002//
+/solve_limid.m/1.1.1.1/Mon Jun  7 15:48:02 2004//
+/unroll_dbn_topology.m/1.1.1.1/Wed May 29 15:59:54 2002//
+/unroll_higher_order_topology.m/1.1.1.1/Fri May 31 10:25:58 2002//
+/unroll_set.m/1.1.1.1/Mon Dec 16 17:57:14 2002//
+D
diff --git a/sourcecodes/bnt-master/BNT/general/CVS/Entries.Log b/sourcecodes/bnt-master/BNT/general/CVS/Entries.Log
new file mode 100644
index 00000000..24f16336
--- /dev/null
+++ b/sourcecodes/bnt-master/BNT/general/CVS/Entries.Log
@@ -0,0 +1 @@
+A D/Old////
diff --git a/sourcecodes/bnt-master/BNT/general/CVS/Repository b/sourcecodes/bnt-master/BNT/general/CVS/Repository
new file mode 100644
index 00000000..08dc139c
--- /dev/null
+++ b/sourcecodes/bnt-master/BNT/general/CVS/Repository
@@ -0,0 +1 @@
+FullBNT/BNT/general
diff --git a/sourcecodes/bnt-master/BNT/general/CVS/Root b/sourcecodes/bnt-master/BNT/general/CVS/Root
new file mode 100644
index 00000000..f3bd14a6
--- /dev/null
+++ b/sourcecodes/bnt-master/BNT/general/CVS/Root
@@ -0,0 +1 @@
+:ext:nsaunier@bnt.cvs.sourceforge.net:/cvsroot/bnt