BNW using Octave instead of Matlab.

This version of BNW should perform the same as the original version. The only difference is that it uses Octave instead of Matlab when running BayesNet Toolbox during parameter learning.

I am calling this BNW_1.02. It can be accessed at:
compbio.uthsc.edu/BNW_1.02

1 files changed, 204 insertions, 0 deletions

diff --git a/sourcecodes/add_evd.php~ b/sourcecodes/add_evd.php~
new file mode 100644
index 00000000..5a5ad2ff
--- /dev/null
+++ b/sourcecodes/add_evd.php~
@@ -0,0 +1,204 @@
+<?php 
+
+$keyval=trim($_GET['My_key']);
+
+include("restructuremap.php");
+
+
+function discretemap($textdata,$sym,$dmapdata)
+{
+$textdata=trim($textdata);
+$leve_l=array();
+$leve_l=explode("\n",$dmapdata);
+$leve_d=array();
+
+foreach($leve_l as $l)
+{ 
+  $l=trim($l);
+  $leve_d=explode("\t",$l);
+  $inxname=trim($leve_d[0]);
+  $name=trim($sym);
+  if($inxname==$name)
+  {    $i=0;
+       foreach($leve_d as $d)
+       { 
+         $d=trim($d);
+         if($d==$textdata)
+             return $i;
+         $i++;
+       }
+  } 
+}
+
+}
+
+
+
+
+
+function mapid($name,$keyval)
+{
+
+$dir="./data/";
+$nm=$dir.$keyval."mapdata.txt";
+$namelist=file_get_contents("$nm");
+
+$str_arrname=array();
+$str_arrname=explode("\n",$namelist);
+$dataname=array();
+$dataname=explode("\t",$str_arrname[0]);
+$i=1;
+
+ foreach($dataname as $cell)
+ {
+   $cell=trim($cell);
+   if($cell==$name)
+   {
+    $val=$i;
+    break;      
+   }
+    $i++;
+ }
+
+return $val;
+
+}
+
+
+$dir="./data/";
+
+$lfile=$dir.$keyval."nlevels.txt";
+$dmapdata=file_get_contents($lfile);   
+
+
+$sym=trim($_GET['name']);
+
+$textdata=$_GET['evidence'];
+$ft=$dir.$keyval."var.txt";
+$fpvar = file_get_contents("$ft");
+$ft=$dir.$keyval."vardata.txt";
+$fpdata  = file_get_contents("$ft");
+$ft=$dir.$keyval."varname.txt";
+$fpvarname  = file_get_contents("$ft");
+
+$vriable=mapid($sym,$keyval);
+
+$ft=$dir.$keyval."type.txt";
+$type = file_get_contents("$ft");
+$type_r=array();
+$type_r=explode("\n",$type);
+$type_n=array();
+$type_n=explode("\t",$type_r[0]);
+$type_d=array();
+$type_d=explode("\t",$type_r[1]);
+
+$nn=count($type_n);
+
+for($j=0;$j<$nn;$j++)
+{   
+   $dn=$type_n[$j];
+   $sym=trim($sym);
+   $dn=trim($dn); 
+   if($dn==$sym)
+     $s=$j;
+} 
+
+$dt=$type_d[$s];
+ 
+if($dt==1)
+   $textdata=reversemap($sym,$textdata,$keyval);
+else
+   $textdata=discretemap($textdata,$sym,$dmapdata);
+
+
+ $ft=$dir."$keyval"."var.txt"; 
+ $f1=fopen("$ft","w");  
+ $ft=$dir."$keyval"."vardata.txt";
+ $f2=fopen("$ft","w");  
+ $ft=$dir."$keyval"."varname.txt";
+ $f3=fopen("$ft","w");
+
+
+$pos = strpos($fpvarname, $sym);
+
+if($fpvarname=="")
+{
+  fwrite($f1,$vriable);
+  fwrite($f2,$textdata);
+  fwrite($f3,$sym);
+
+}
+else 
+{
+  if ($pos === false)// append at buttom as new records 
+  {
+  
+     $fpvar=$fpvar."\t".$vriable;
+     fwrite($f1,$fpvar);
+
+     $fpdata=$fpdata."\t".$textdata;
+     fwrite($f2,$fpdata);
+
+     $fpvarname=$fpvarname."\t".$sym;
+     fwrite($f3,$fpvarname);
+
+  }
+  else 
+  {
+     $cld=explode("\t",$fpvarname);
+     $j=0;
+     $inx=0;
+     foreach($cld as $cc)
+     {
+        $cc=trim($cc);
+        if($cc==$sym)
+        {
+              $inx=$j;
+        } 
+        $j++;
+    
+     }
+
+ 
+     fwrite($f1,$fpvar);
+     fwrite($f3,$fpvarname);
+
+     $cld1=explode("\t",$fpdata);
+     $j=0;
+     $dataw="";
+     foreach($cld1 as $cc)
+     {
+        $cc=trim($cc);
+        if($j==$inx)
+        {
+              $inx=$j;
+              fprintf($f2,"%s\t",$textdata);
+        }
+        else 
+        {          
+              fprintf($f2,"%s\t",$cc);
+        }
+        
+        $j++;
+    
+     }
+
+   }
+
+}
+
+
+//  $file1="./data/".$keyval."run_evidencemodified.sh";
+//  $initiallines=file_get_contents("./data/temp_evidence_file");
+//  $all_lines="$initiallines"."$keyval\nfi\nexit";
+   
+//  $fp = fopen($file1,"w"); 
+//  fwrite($fp, "$all_lines\n");
+//  fclose($fp);
+  //execute shell script for matlab
+  shell_exec('./run_octave_evd.sh '.$keyval);
+
+?>
+<script>
+window.open("network_layout_evd_2.php?My_key=<?php print($keyval);?>",'_self',false);
+</script>