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authorziejd22021-10-11 16:00:02 -0500
committerziejd22021-10-11 16:00:02 -0500
commit566a4de3fcc9b90da036dbf385044319c11a2b6a (patch)
tree15c23be0643f41128f11cf9bb378ed505e259a6b /README.md
parenta20784bad5cfa214ce23d16695d0064571bae9c3 (diff)
parent73ba58868451b5fc6611e1feaa9b63f17b6cd19d (diff)
downloadBNW-566a4de3fcc9b90da036dbf385044319c11a2b6a.tar.gz
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 This contains the code for the Bayesian Network Webserver (BNW).
 
-The master branch will be the stable version of the code for running with GeneNetwork. The original BNW website is compbio.uthsc.edu/BNW, which currently redirects to BNW_1.3.
+The master branch will be the stable version of the code for running with GeneNetwork. The BNW website is compbio.uthsc.edu/BNW; the GeneNetwork version is at: bnw.genenetwork.org.
 
 There are a couple of files in the info_files directory that provide descriptions of the BNW code and other information.
 
@@ -15,5 +15,10 @@ There are five branches.
 
 4) genenet6_final_1.3: This is the final version of BNW on the GENENET6 server.
 
-5) genenet8_initial_1.3: This is the working version of BNW on GENENET8 when we transitioned to that server.
+5) genenet8_initial_1.3: This is the working version of BNW on GENENET8 when we transitioned to that server. 
+   A couple of notes about this version.
+   - This version writes files created by users running BNW to /var/lib/genenet/bnw. 
+   - The structure learning package needs to be installed in /var/lib/genenet/bnw. The files in var_lib_genenet_bnw need to be copied to /var/lib/genenet/bnw and build.sh should be run there.
+   - There is a python environment on GENENET8 that is used by BNW. This is in bnw-env, but I am not sure how well this will transition to other servers.
+