From d672c81f7963180c4979aecf93b624d12d3f2ed2 Mon Sep 17 00:00:00 2001 From: Pjotr Prins Date: Thu, 5 Oct 2017 11:10:57 +0000 Subject: Addresses https://github.com/genetics-statistics/GEMMA/issues/81 --- src/param.h | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) (limited to 'src/param.h') diff --git a/src/param.h b/src/param.h index 08b1e10..ff279bd 100644 --- a/src/param.h +++ b/src/param.h @@ -56,6 +56,9 @@ public: double p_wald; // p value from a Wald test. double p_lrt; // p value from a likelihood ratio test. double p_score; // p value from a score test. + double logl_H1; // log likelihood under the alternative + // hypothesis as a measure of goodness of fit, + // see https://github.com/genetics-statistics/GEMMA/issues/81 }; // Results for mvLMM. @@ -118,7 +121,7 @@ public: bool mode_debug = false; uint issue; // enable tests for issue on github tracker - int a_mode; // Analysis mode, 1/2/3/4 for Frequentist tests + uint a_mode; // Analysis mode, 1/2/3/4 for Frequentist tests int k_mode; // Kinship read mode: 1: n by n matrix, 2: id/id/k_value; vector p_column; // Which phenotype column needs analysis. size_t d_pace; // Display pace -- cgit v1.2.3