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2018-02-28MinGW mkdir function doesn't allow for S_IRWXU, paramsDannyArends
2018-02-28renamed import io.h to gemma_io.hDannyArends
2018-02-28io.h is a std lib function for MinGW64, renamed it to gemma_io.hDannyArends
2017-12-19Documentation and Travis fixesPjotr Prins
2017-12-19Make eigelib -legacyPjotr Prins
2017-12-17Reverted on using eigenlib_dgemm because of hanging K compute with datasetPjotr Prins
2017-12-17BimbamKin: show error when genotypes do not matchPjotr Prins
2017-12-12Updated copyright infoPjotr Prins
2017-12-08Changed banner and behaviourPjotr Prins
2017-12-08Legacy mode does not show logl_H1 column in outputPjotr Prins
2017-12-08Drop legacy eigenlib_dgemm from fastblasPjotr Prins
2017-12-08Reduce debug noise levelsPjotr Prins
2017-12-07Improve error messages, closes ↵Pjotr Prins
https://github.com/genetics-statistics/GEMMA/issues/116
2017-12-07Travis: fixesPjotr Prins
2017-12-07More notes and removed unused LULndetPjotr Prins
2017-12-07Some more overflow checksPjotr Prins
2017-12-06Some cleanup on matrix checkingPjotr Prins
2017-12-06Fix openblas complaintPjotr Prins
2017-12-06Integer overflow checking for matrix dgemm and adding path for OpenBlas ↵Pjotr Prins
include files
2017-11-30Fixed never-ending run when analyzing only a single SNP, refPjotr Prins
https://groups.google.com/forum/#!topic/gemma-discussion/a-ommTiucC8
2017-11-22Explicit include of gsl_sys.h for GSLv1Pjotr Prins
2017-11-22Remove compiler warningsPjotr Prins
2017-11-22Remove compiler warnings and add check is_nanPjotr Prins
2017-11-15Nans: introducing checking on mem freePjotr Prins
2017-11-11Fix compiler warningsPjotr Prins
2017-11-11Cleaning up buffer use thanks to compiler warningsPjotr Prins
2017-11-11Cleaning up compiler warningsPjotr Prins
2017-11-10Remove compiler warningsPjotr Prins
2017-11-10Tests: added more bslmm testsPjotr Prins
2017-11-09Adding tests for bslmmPjotr Prins
2017-11-09Disabled debug output when not using -debugPjotr Prins
2017-10-26VERSION now contains the GEMMA version number. A script generates a headerPjotr Prins
file named ./src/version.h. See Makefile for details.
2017-10-26Changed SNPs into SNPs/var in output, ref ↵Pjotr Prins
https://github.com/genetics-statistics/GEMMA/issues/107#issuecomment-339475978
2017-10-26Get rid of compiler warningPjotr Prins
2017-10-26Changed SNPs into SNPs/var in output, ref ↵Pjotr Prins
https://github.com/genetics-statistics/GEMMA/issues/107#issuecomment-339475978
2017-10-23Travis-ci:Pjotr Prins
- Disabled gcc-6 since we develop with later tools anyway - Turned the release test into a simple integration test - Adding MacOSX on Travis-ci Tests: Adding tests for Plink w. LOCO Safety: Introduce strtok_safe to get rid of segfaults
2017-10-20NaN check only when -debug is usedPjotr Prins
2017-10-18Tests still pass with safe_alloc (which sets the buffers to NaNs on allocation)Pjotr Prins
2017-10-14TravisPjotr Prins
2017-10-14More travisPjotr Prins
2017-10-14Travis: more fixesPjotr Prins
2017-10-14TravisPjotr Prins
2017-10-14OpenBlas infoPjotr Prins
2017-10-14Travis fixesPjotr Prins
2017-10-14Older openblas does not like blasintPjotr Prins
2017-10-14Travis fixPjotr Prins
2017-10-14More disabling of eigenlib (faster compilation) and avoid OPENBLAS_CONST ↵Pjotr Prins
which does not work on older cblas.h
2017-10-13Refactored debug settingsPjotr Prins
Replaced eigenlib_dgemm with fast_dgemm - 10-30% speed gain for GEMMA
2017-10-13Openblas specific include filePjotr Prins
2017-10-13Replacing first dgemm - tests failPjotr Prins
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