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PanGEMMA: Genome-wide Efficient Mixed Model Association
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io.cpp
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Author
2017-11-30
Fixed never-ending run when analyzing only a single SNP, ref
Pjotr Prins
2017-11-22
Remove compiler warnings and add check is_nan
Pjotr Prins
2017-11-09
Adding tests for bslmm
Pjotr Prins
2017-10-23
Travis-ci:
Pjotr Prins
2017-10-18
Tests still pass with safe_alloc (which sets the buffers to NaNs on allocation)
Pjotr Prins
2017-10-14
More disabling of eigenlib (faster compilation) and avoid OPENBLAS_CONST whic...
Pjotr Prins
2017-10-13
Refactored debug settings
Pjotr Prins
2017-10-13
Fixed mean and iterations in Plink - now this works
Pjotr Prins
2017-10-13
Consolidate into ProgressBar into one function and related updates
Pjotr Prins
2017-10-13
Change ulong type to long.
Peter Carbonetto
2017-10-05
Removed Oxford format as per https://github.com/genetics-statistics/GEMMA/iss...
Pjotr Prins
2017-10-05
Adding debug statements on entering functions and added test for issue 58
Pjotr Prins
2017-10-05
Added a few checks and info
Pjotr Prins
2017-08-27
-a
Pjotr Prins
2017-08-26
Debug: only output check on -debug
Pjotr Prins
2017-08-26
Tests and enforces added related to https://github.com/genetics-statistics/GE...
Pjotr Prins
2017-08-20
Added checks for K
Pjotr Prins
2017-08-15
Fixes output file with kinship has extra column
Pjotr Prins
2017-08-03
LOCO is implemented in GEMMA for the BIMBAM format. Pass in the -loco
Pjotr Prins
2017-08-02
Massive patch using LLVM coding style. It was generated with:
Pjotr Prins
2017-07-07
Some three compile time fixes for the GNU GCC 7.1.0 compiler on Linux.
Pjotr Prins
2017-07-04
Removed FORCE_FLOAT from io.cpp.
Peter Carbonetto
2017-06-19
Removed FORCE_FLOAT from param.cpp.
Peter Carbonetto
2017-05-31
Removed WITH_LAPACK compile/build option.
Peter Carbonetto
2017-05-31
Removing FORCE_FLOAT from some more C++ source files.
Peter Carbonetto
2017-05-09
Putatively fixed -Wc++11-narrowing error in io.cpp (see Issue #24).
Peter Carbonetto
2017-05-04
Fixed problems with duplicate symbols; now using static gsl libraries in Make...
Peter Carbonetto
2017-05-04
Local updates made by Xiang---shared via email on May 4, 2017, subject: gemma...
Peter Carbonetto
2017-05-04
Fixed problems with duplicate symbols in io.o, lmm.o, param.o and vc.o; creat...
Peter Carbonetto
2016-05-23
version 0.95alpha
xiangzhou
2015-07-11
add GxE test
xiangzhou
2015-07-11
add GXE test
xiangzhou
2014-10-30
version 0.95alpha
xiangzhou
2014-09-22
version 0.95alpha
xiangzhou