pangemma - PanGEMMA: Genome-wide Efficient Mixed Model Association

Age	Commit message (Collapse)	Author
2017-12-06	Some cleanup on matrix checking	Pjotr Prins

2017-11-22	Remove compiler warnings and add check is_nan	Pjotr Prins

2017-11-15	Nans: introducing checking on mem free	Pjotr Prins

2017-11-09	Disabled debug output when not using -debug	Pjotr Prins

2017-10-23	Travis-ci:	Pjotr Prins
	- Disabled gcc-6 since we develop with later tools anyway - Turned the release test into a simple integration test - Adding MacOSX on Travis-ci Tests: Adding tests for Plink w. LOCO Safety: Introduce strtok_safe to get rid of segfaults
2017-10-20	NaN check only when -debug is used	Pjotr Prins

2017-10-18	Tests still pass with safe_alloc (which sets the buffers to NaNs on allocation)	Pjotr Prins

2017-10-13	Refactored debug settings	Pjotr Prins
	Replaced eigenlib_dgemm with fast_dgemm - 10-30% speed gain for GEMMA
2017-10-13	OpenBlas: preparing for dgemm use	Pjotr Prins

2017-10-13	debug message: minor change	Pjotr Prins

2017-10-13	Fixed warning with assignment in if statement.	Peter Carbonetto

2017-10-13	Removing warnings on debug.h assignment	Pjotr Prins

2017-08-22	Fixes matrix checks - looking saner now	Pjotr Prins
	- Matrix checks as described in https://github.com/genetics-statistics/GEMMA/issues/72 - introduces -strict switch which will exit on certain conditions - zero small eigenvalues in EigenDecomp_Zeroed which also checks for negative values - commented out float versions of functions in lapack.cpp (pre-removal) - reverted on disabled regression tests (GEMMA shows its previous behaviour now)
2017-08-20	Added checks for K	Pjotr Prins